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1.
Chemistry ; 25(61): 14015-14020, 2019 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-23108625

RESUMO

Compound I from cytochrome P450 119 prepared by the photooxidation method involving peroxynitrite oxidation of the resting enzyme to Compound II followed by photooxidation to Compound I was compared to Compound I generated by m-chloroperoxybenzoic acid (MCPBA) oxidation of the resting enzyme. The two methods gave the same UV/Visible spectra, the same products from oxidations of lauric acid and palmitic acid and their (ω-2,ω-2,ω-3,ω-3)-tetradeuterated analogues, and the same kinetics for oxidations of lauric acid and caprylic acid. The experimental identities between the transients produced by the two methods leave no doubt that the same Compound I species is formed by the two methods.


Assuntos
Proteínas Arqueais/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Proteínas Arqueais/genética , Sistema Enzimático do Citocromo P-450/genética , Cinética , Ácidos Láuricos/química , Luz , Oxirredução , Ácido Palmítico/química , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/isolamento & purificação , Espectrofotometria
2.
Invest Ophthalmol Vis Sci ; 54(13): 8051-61, 2013 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-24255046

RESUMO

PURPOSE: To determine the abundance of extracellular DNA (eDNA) in tear fluid of patients with dry eye disease (DED) and to report clinical outcomes after DNase I eyedrops use to reduce excessive tear fluid eDNA. METHODS: Tear fluid was collected from healthy control subjects and patients with DED. The eDNA abundance was determined with the PicoGreen dye assay. The DED symptoms and clinical signs were recorded and correlated with eDNA abundance. Two patients with DED having excessive eDNA in tear fluid were treated with DNase I eyedrops. RESULTS: The PicoGreen dye assay measures tear fluid eDNA abundance after a 2-minute incubation time. With longer incubations, admixed cells also contribute to eDNA measurements. The mean (SE) eDNA abundance in healthy control subjects' tear fluid was 1.4 (0.2) µg/mL. The mean (SE) eDNA abundance in tear fluid of patients with nonautoimmune DED, autoimmune DED, and graft versus host disease was significantly higher: the values were 2.9 (0.6), 5.2 (1.2), and 9.1 (2.3) µg/mL, respectively (P < 0.05). In most of these patients, the PicoGreen dye kinetic assay of tear fluid showed an increase in fluorescence signal due to the presence of viable cells in tear fluid. Tear fluid eDNA had the best correlation with corneal Rose Bengal staining (r = 0.55). Treatment of patients having DED with DNase I eyedrops reduced eDNA abundance, abrogated signal increase, and improved comfort. CONCLUSIONS: Excessive eDNA is present in tear fluid of patients with dry eyes. A novel therapeutic approach for managing DED may be to measure eDNA abundance in tear fluid with the PicoGreen dye assay and reduce excessive amounts with DNase I eyedrops.


Assuntos
DNA/metabolismo , Desoxirribonuclease I/administração & dosagem , Síndromes do Olho Seco/diagnóstico , Síndromes do Olho Seco/tratamento farmacológico , Lágrimas/metabolismo , Síndromes do Olho Seco/metabolismo , Feminino , Corantes Fluorescentes , Fluorofotometria , Humanos , Masculino , Pessoa de Meia-Idade , Soluções Oftálmicas/administração & dosagem , Compostos Orgânicos , Rosa Bengala , Lágrimas/citologia
3.
Free Radic Biol Med ; 61: 40-50, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23474271

RESUMO

Peroxynitrite, a highly reactive biological oxidant, is formed under pathophysiologic conditions from the diffusion-limited reaction of nitric oxide and superoxide radical anion. Peroxynitrite has been implicated as the mediator of nitric oxide toxicity in many diseases and as an important signaling disrupting molecule (L. Liaudet et al., Front. Biosci.14, 4809-4814, 2009) [1]. Biosensors effective at capturing peroxynitrite in a specific and fast enough manner for detection, along with readouts compatible with in vivo studies, are lacking. Here we report that the boronic acid-based bioluminescent system PCL-1 (peroxy-caged luciferin-1), previously reported as a chemoselective sensor for hydrogen peroxide (G.C. Van de Bittner et al., Proc. Natl. Acad. Sci. USA107, 21316-21321, 2010) [2], reacts with peroxynitrite stoichiometrically with a rate constant of 9.8±0.3×10(5)M(-1)s(-1) and a bioluminescence detection limit of 16nM, compared to values of 1.2±0.3M(-1)s(-1) and 231nM for hydrogen peroxide. Further, we demonstrate bioluminescent detection of peroxynitrite in the presence of physiological competitors: carbon dioxide, glutathione, albumin, and catalase. We also demonstrate the utility of this method to assess peroxynitrite formation in mammalian cells by measuring peroxynitrite generated under normal culture conditions after stimulation of macrophages with bacterial endotoxin lipopolysaccharide. Thus, the PCL-1 method for measuring peroxynitrite generation shows superior selectivity over other oxidants under in vivo conditions.


Assuntos
Benzotiazóis/metabolismo , Medições Luminescentes/métodos , Ácido Peroxinitroso/análise , Animais , Ácidos Borônicos , Camundongos , Óxido Nítrico Sintase Tipo II/fisiologia , Ácido Peroxinitroso/sangue
4.
Invest Ophthalmol Vis Sci ; 53(13): 8253-63, 2012 Dec 17.
Artigo em Inglês | MEDLINE | ID: mdl-23169882

RESUMO

PURPOSE: We determined whether nucleases are deficient in the tear fluid of dry eye disease (DED) patients, and whether this causes extracellular DNA (eDNA) and neutrophil extracellular trap (NET) accumulation in the precorneal tear film, thus causing ocular surface inflammation. METHODS: Exfoliated cells adhered to Schirmer test strips were collected on glass slides, and immunofluorescence confocal microscopy was used to evaluate neutrophils, eDNA, NETs, and their molecular components. Similar experiments were performed with mucoid films collected from the inferior conjunctival fornix or bulbar conjunctiva. We used quantitative PCR to evaluate eDNA signaling pathways and inflammatory cytokine expression. We also determined the amount of ocular surface eDNA and evaluated tear fluid nuclease activity. RESULTS: eDNA, NETs, and neutrophils were present on the ocular surface in DED patients and abundant in mucoid films. NETs consisted of eDNA, histones, cathelicidin, and neutrophil elastase. Tear fluid nuclease activity was decreased significantly in DED patients, whereas the amount of eDNA on the ocular surface was increased significantly. Expression of genes downstream of eDNA signaling, such as TLR9, MyD88, and type I interferon, as well as the inflammatory cytokines interleukin-6 and tumor necrosis factor-α, was significantly increased in DED patients. CONCLUSIONS: Extracellular DNA production and clearance mechanisms are dysregulated in DED. Nuclease deficiency in tear fluid allows eDNA and NETs to accumulate in precorneal tear film, and results in ocular surface inflammation. These findings point to novel therapeutic interventions in severe DED based on clearance of eDNA, NETs, and other molecular components from the ocular surface.


Assuntos
Peptídeos Catiônicos Antimicrobianos/metabolismo , DNA/metabolismo , Desoxirribonuclease I/metabolismo , Síndromes do Olho Seco/metabolismo , Elastase de Leucócito/metabolismo , Lipocalina 1/metabolismo , Lágrimas/enzimologia , Túnica Conjuntiva/metabolismo , Ensaio de Imunoadsorção Enzimática , Transferência Ressonante de Energia de Fluorescência , Técnica Indireta de Fluorescência para Anticorpo , Expressão Gênica , Histonas/metabolismo , Humanos , Microscopia Confocal , Neutrófilos/fisiologia , Reação em Cadeia da Polimerase , Saliva/metabolismo , Transdução de Sinais/fisiologia , Catelicidinas
5.
Chembiochem ; 13(14): 2061-4, 2012 Sep 24.
Artigo em Inglês | MEDLINE | ID: mdl-22890798

RESUMO

The rates of oxidation of fatty acids by CYP119 compound I were dependent on the pH of the medium. The plot shows log k values for reactions of acids as a function of pH, where the slopes indicate mixed third-order and fourth-order dependence on base concentration. For palmitic acid, the rate increased 50-fold over the pH range 6.8-7.3.


Assuntos
Proteínas Arqueais/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Ácidos Graxos/metabolismo , Proteínas Arqueais/química , Caprilatos/química , Caprilatos/metabolismo , Sistema Enzimático do Citocromo P-450/química , Ácidos Graxos/química , Concentração de Íons de Hidrogênio , Cinética , Ácidos Láuricos/química , Ácidos Láuricos/metabolismo , Oxirredução , Ácido Palmítico/química , Ácido Palmítico/metabolismo , Estereoisomerismo
7.
Org Biomol Chem ; 9(21): 7427-33, 2011 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-21901220

RESUMO

Oxidations of 10-undecenoic acid by cytochrome P450(BM-3) and its Compound I transient were studied. The only product formed in Compound I oxidations was 10,11-epoxyundecanoic acid, whereas the enzyme under turnover conditions gave the epoxide and 9-hydroxy-10-undecenoic acid in a 10 : 90 ratio. Kinetic studies at 0 °C of oxidations by Compounds I formed by MCPBA oxidation and by a photo-oxidation pathway gave the same results, displaying saturation kinetics that yielded equilibrium binding constants and first-order oxidation rate constants that were experimentally indistinguishable. Oxidation of 10-undecenoic acid by Compound I from CYP119 generated by MCBPA oxidation also gave 10,11-epoxyundecanoic acid as the only product. CYP119 Compound I bound the substrate less strongly but reacted with a faster oxidation rate constant than P450(BM-3) Compound I. The kinetic parameters for oxidation of the substrate by P450(BM-3) under turnover conditions were similar to those of the Compound I transient even though the products differed.


Assuntos
Sistema Enzimático do Citocromo P-450/metabolismo , Ácidos Graxos Monoinsaturados/metabolismo , Porfirinas/metabolismo , Cátions/química , Cátions/metabolismo , Sistema Enzimático do Citocromo P-450/química , Ácidos Graxos Monoinsaturados/química , Radicais Livres/química , Radicais Livres/metabolismo , Cinética , Oxirredução , Porfirinas/química , Ácidos Undecilênicos
8.
Org Biomol Chem ; 9(2): 516-22, 2011 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-21060911

RESUMO

The 1-hydroxy-1-methyl-6,6-diphenyl-5-hexenyl radical (4a) and the 1-hydroxy-1-methyl-7,7-diphenyl-6-heptenyl radical (4b) were prepared from the corresponding PTOC esters (anhydrides of a carboxylic acid and N-hydroxypyridine-2-thione). The key step in the synthetic method for the precursors was a coupling reaction of the respective carboxylic acids with the thiohydroxamic acid, which was conducted for ca. 5 min and followed rapidly by chromatography. Rate constants for cyclizations of radicals 4a and 4b in acetonitrile and in THF were measured directly between -30 and 60 °C by laser flash photolysis methods. The Arrhenius functions in acetonitrile are log k = 9.9-2.6/2.303RT and log k = 8.9-4.4/2.303RT (kcal mol(-1)) for 4a and 4b, respectively. Rate constants for cyclizations at room temperature of 9 × 10(7) s(-1) and 4 × 10(5) s(-1) are somewhat larger than the rate constants for cyclizations of analogous alkyl radicals. Crude rate constants at room temperature for H-atom trapping of 4a by thiophenol and 4b by t-butylthiol were k(T) = 1.2 × 10(9) M(-1) s(-1) and k(T) = 2 × 10(7) M(-1) s(-1), respectively, which are modestly larger than rate constants for reactions of alkyl radicals with the same trapping agents.


Assuntos
Radical Hidroxila/química , Ciclização , Estrutura Molecular
9.
J Inorg Biochem ; 104(11): 1156-63, 2010 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-20674981

RESUMO

Oxidation of the heme-thiolate enzyme chloroperoxidase (CPO) from Caldariomyces fumago with peroxynitrite (PN) gave the Compound II intermediate, which was photo-oxidized with 365 nm light to give a reactive oxidizing species. Cryo-solvents at pH ≈ 6 were employed, and reactions were conducted at temperatures as low as -50° C. The activity of CPO as evaluated by the chlorodimedone assay was unaltered by treatment with PN or by production of the oxidizing transient and subsequent reaction with styrene. EPR spectra at 77K gave the amount of ferric protein at each stage in the reaction sequence. The PN oxidation step gave a 6:1 mixture of Compound II and ferric CPO, the photolysis step gave an approximate 1:1 mixture of active oxidant and ferric CPO, and the final mixture after reaction with excess styrene contained ferric CPO in 80% yield. In single turnover reactions at -50°C, styrene was oxidized to styrene oxide in high yield. Kinetic studies of styrene oxidation at -50°C displayed saturation kinetics with an equilibrium constant for formation of the complex of K(bind)=3.8 x 10(4)M(-1) and an oxidation rate constant of k(ox)=0.30s(-1). UV-Visible spectra of mixtures formed in the photo-oxidation sequence at ca. -50° C did not contain the signature Q-band absorbance at 690 nm ascribed to CPO Compound I prepared by chemical oxidation of the enzyme, indicating that different species were formed in the chemical oxidation and the photo-oxidation sequence.


Assuntos
Cloreto Peroxidase/química , Temperatura Baixa , Ferro/química , Processos Fotoquímicos , Espectroscopia de Ressonância de Spin Eletrônica , Compostos de Epóxi/metabolismo , Heme/química , Heme/metabolismo , Concentração de Íons de Hidrogênio , Cinética , Oxidantes , Oxirredução , Ácido Peroxinitroso/química , Fotólise , Espécies Reativas de Oxigênio/química , Solventes/química , Espectrofotometria Ultravioleta , Estireno/química , Temperatura
10.
Biochemistry ; 48(38): 9140-6, 2009 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-19708688

RESUMO

Cytochrome P450 (CYP or P450) enzymes are ubiquitous in nature where they catalyze a vast array of oxidation reactions. The active oxidants in P450s have long been assumed to be iron(IV)-oxo porphyrin radical cations termed Compounds I, but P450 Compounds I have proven to be difficult to prepare. The recent development of an entry to these transients by photo-oxidation of the corresponding iron(IV)-oxo neutral porphyrin species (Compounds II) permits spectroscopic and kinetic studies. We report here application of the photo-oxidation method for production of Compound I from the heme domain of CYP102A1 (cytochrome P450(BM-3)), and product and kinetic studies of reactions of styrene with this Compound I transient and also Compound I from CYP119. The studies were performed at low temperatures in 1:1 (v:v) mixtures of glycerol and phosphate buffer. Single-turnover reactions at 0 degrees C gave styrene oxide in good yields. In kinetic studies conducted between -10 and -50 degrees C, both Compounds I displayed saturation kinetics permitting determinations of binding constants and first-order oxidation rate constants. Temperature-dependent functions for the binding constants and rate constants were determined for both Compounds I. In the temperature range studied, the Compound I transient from the CYP102A1 heme domain bound styrene more strongly than Compound I from CYP119, but the rate constants for oxidations of styrene by the latter were somewhat larger than those for the former. The temperature-dependent functions for the first-order oxidation reactions are as follows: log k = 13.2-15.2/2.303RT and log k = 13.3-14.6/2.303RT (kilocalories per mole) for Compounds I from the CYP102A1 heme domain and CYP119, respectively.


Assuntos
Proteínas Arqueais/química , Proteínas Arqueais/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , NADPH-Ferri-Hemoproteína Redutase/química , NADPH-Ferri-Hemoproteína Redutase/metabolismo , Proteínas Arqueais/genética , Bacillus megaterium/enzimologia , Bacillus megaterium/genética , Proteínas de Bactérias/genética , Sistema Enzimático do Citocromo P-450/genética , Ativação Enzimática , Heme/química , Cinética , NADPH-Ferri-Hemoproteína Redutase/genética , Oxirredução , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Estireno/metabolismo , Sulfolobus acidocaldarius/enzimologia , Sulfolobus acidocaldarius/genética , Termodinâmica
11.
J Am Chem Soc ; 131(30): 10629-36, 2009 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-19572732

RESUMO

Cytochrome P450 enzymes are commonly thought to oxidize substrates via an iron(IV)-oxo porphyrin radical cation transient termed Compound I, but kinetic studies of P450 Compounds I are essentially nonexistent. We report production of Compound I from cytochrome P450 119 (CYP119) in high conversion from the corresponding Compound II species at low temperatures in buffer mixtures containing 50% glycerol by photolysis with 365 nm light from a pulsed lamp. Compound I was studied as a reagent in oxidations of benzyl alcohol and its benzylic mono- and dideuterio isotopomers. Pseudo-first-order rate constants obtained at -50 degrees C with concentrations of substrates between 1.0 and 6.0 mM displayed saturation kinetics that gave binding constants for the substrate in the Compound I species (K(bind)) and first-order rate constants for the oxidation reactions (k(ox)). Representative results are K(bind) = 214 M(-1) and k(ox) = 0.48 s(-1) for oxidation of benzyl alcohol. For the dideuterated substrate C(6)H(5)CD(2)OH, kinetics were studied between -50 and -25 degrees C, and a van't Hoff plot for complexation and an Arrhenius plot for the oxidation reaction were constructed. The H/D kinetic isotope effects (KIEs) at -50 degrees C were resolved into a large primary KIE (P = 11.9) and a small, inverse secondary KIE (S = 0.96). Comparison of values extrapolated to 22 degrees C of both the rate constant for oxidation of C(6)H(5)CD(2)OH and the KIE for the nondeuterated and dideuterated substrates to values obtained previously in laser flash photolysis experiments suggested that tunneling could be a significant component of the total rate constant at -50 degrees C.


Assuntos
Proteínas Arqueais/metabolismo , Álcool Benzílico/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Metaloporfirinas/metabolismo , Proteínas Arqueais/química , Álcool Benzílico/química , Sistema Enzimático do Citocromo P-450/química , Deutério/química , Ativação Enzimática , Isótopos/química , Cinética , Metaloporfirinas/química , Oxirredução , Fotólise , Análise Espectral , Temperatura
12.
J Am Chem Soc ; 131(8): 2971-6, 2009 Mar 04.
Artigo em Inglês | MEDLINE | ID: mdl-19209859

RESUMO

Cytochromes P450 are ubiquitous heme-containing enzymes that catalyze a wide range of reactions in nature including many oxidation reactions. The active oxidant species in P450 enzymes are widely thought to be iron(IV)-oxo porphyrin radical cations, termed Compound I species, but these intermediates have not been observed under turnover conditions. We prepared Compounds I of the mammalian hepatic P450 enzyme CYP2B4 and three mutants (E301Q, T302A, and F429H) by laser flash photolysis of the Compound II species that, in turn, were prepared by reaction of the resting enzymes with peroxynitrite. The PN treatment resulted in a small amount of nitration of the P450 as determined by mass spectrometry but no change in reactivity of the P450 in a test reaction. CYP2B4 Compound I oxidized benzphetamine to norbenzphetamine in high yield in bulk studies. In direct kinetic studies of benzphetamine oxidations, Compounds I displayed saturation kinetics with similar binding equilibrium constants (K(bind)) for each. The first-order oxidation rate constants (k(ox)) were comparable for Compounds I of CYP2B4, the E301Q mutant, and the T302A mutant, whereas the k(ox) for Compound I of the F429H mutant was reduced by a factor of 2. CYP119 Compound I, studied for comparison purposes, reacted with benzphetamine with a binding constant that was nearly an order of magnitude smaller than that of CYP2B4 but a rate constant that was similar. Substrate binding constants for P450 Compound I are important for controlling overall rates of oxidation reactions, and the intrinsic reactivities of Compounds I from various P450 enzymes are comparable.


Assuntos
Hidrocarboneto de Aril Hidroxilases/química , Benzfetamina/química , Proteínas Arqueais/química , Proteínas Arqueais/metabolismo , Hidrocarboneto de Aril Hidroxilases/metabolismo , Benzfetamina/metabolismo , Cromatografia Líquida de Alta Pressão , Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , Família 2 do Citocromo P450 , Cinética , Modelos Moleculares , Oxirredução , Processos Fotoquímicos , Fotólise , Espectrometria de Massas por Ionização por Electrospray , Espectrofotometria Ultravioleta
13.
J Am Chem Soc ; 131(7): 2621-8, 2009 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-19193008

RESUMO

Photolyses of metastable porphyrin-iron(IV) diperchlorates in laser flash photolysis reactions gave highly reactive transients. The systems studied were 5,10,15,20-tetraphenylporphyrin (TPP), 5,10,15,20-tetramesitylporphyrin (TMP), and 2,3,7,8,12,13,17,18-octaethylporphyrin (OEP). The new species, which decayed within milliseconds in acetonitrile solutions, were shown to react with organic substrates by oxo-transfer reactions involving insertions into carbon-carbon double bonds of alkenes and styrenes or benzylic carbon-hydrogen bonds of arenes. The order of reactivity was OEP > TPP > TMP. Second-order rate constants for reactions with several substrates at 22 degrees C were determined; representative values of rate constants for the TPP derivative were k = 8.6 x 10(5) M(-1) s(-1) for styrene, k = 2.5 x 10(6) M(-1) s(-1) for cyclohexene, and k = 7.7 x 10(4) M(-1) s(-1) for ethylbenzene. These porphyrin-iron-oxo transients reacted 4-5 orders of magnitude faster than the corresponding iron(IV)-oxo porphyrin radical cations with rate constants similar to those of porphyrin-manganese(V)-oxo derivatives. Rate constants for oxidations of benzylic C-H positions of arenes correlated with the C-H bond dissociation energies, and Hammett correlations for reactions with substituted styrenes had rho(+) values ranging from -0.5 to -0.7, reflecting electrophilic character of the oxidants and their high reactivity. On the basis of their unique UV-visible spectra, high reactivities, and oxo-transfer properties, the new transients are tentatively identified as porphyrin-iron(V)-oxo perchlorates, electronic isomers (or valence tautomers) of well-known iron(IV)-oxo porphyrin radical cations.


Assuntos
Compostos de Ferro/química , Metaloporfirinas/química , Compostos Férricos/química , Heme/química , Cinética , Oxirredução , Fotólise , Porfirinas/química , Substâncias Redutoras/química , Espectrofotometria Ultravioleta
14.
J Am Chem Soc ; 130(40): 13310-20, 2008 Oct 08.
Artigo em Inglês | MEDLINE | ID: mdl-18788736

RESUMO

The Compound I derivative of cytochrome P450 119 (CYP119) was produced by laser flash photolysis of the corresponding Compound II derivative, which was first prepared by reaction of the resting enzyme with peroxynitrite. The UV-vis spectrum of the Compound I species contained an asymmetric Soret band that could be resolved into overlapping transitions centered at approximately 367 and approximately 416 nm and a Q band with lambda(max) approximately 650 nm. Reactions of the Compound I derivative with organic substrates gave epoxidized (alkene oxidation) and hydroxylated (C-H oxidation) products, as demonstrated by product studies and oxygen-18 labeling studies. The kinetics of oxidations by CYP119 Compound I were measured directly; the reactions included hydroxylations of benzyl alcohol, ethylbenzene, Tris buffer, lauric acid, and methyl laurate and epoxidations of styrene and 10-undecenoic acid. Apparent second-order rate constants, equal to the product of the equilibrium binding constant (K(bind)) and the first-order oxidation rate constant (k(ox)), were obtained for all of the substrates. The oxidations of lauric acid and methyl laurate displayed saturation kinetic behavior, which permitted the determination of both K(bind) and k(ox) for these substrates. The unactivated C-H positions of lauric acid reacted with a rate constant of k(ox) = 0.8 s(-1) at room temperature. The CYP119 Compound I derivative is more reactive than model Compound I species [iron(IV)-oxo porphyrin radical cations] and similar in reactivity to the Compound I derivative of the heme-thiolate enzyme chloroperoxidase. Kinetic isotope effects (kH/kD) for oxidations of benzyl alcohol and ethylbenzene were small, reflecting the increased reactivity of the Compound I derivative in comparison to models. Nonetheless, CYP119 Compound I apparently is much less reactive than the oxidizing species formed in the P450 cam reaction cycle. Studies of competition kinetics employing CYP119 activated by hydrogen peroxide indicated that the same oxidizing transient is formed in the photochemical reaction and in the hydrogen peroxide shunt reaction.


Assuntos
Proteínas Arqueais/química , Proteínas Arqueais/metabolismo , Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , Cinética , Estrutura Molecular , Oxirredução , Ácido Peroxinitroso/química , Ácido Peroxinitroso/metabolismo , Fotólise , Espectrofotometria , Especificidade por Substrato , Sulfolobus solfataricus/enzimologia
15.
J Am Chem Soc ; 130(25): 7776-7, 2008 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-18512909

RESUMO

Rate constants for oxidations of benzyl alcohol-d0 and -d7 by oxoiron(IV) tetramesitylporphyrin radical cation perchlorate in acetonitrile were measured in single turnover kinetic studies. The kinetic isotope effect (kH/kD) increased from 28 at 23 degrees C to 360 at -30 degrees C due to extensive hydrogen atom tunneling that was analyzed in terms of a parabolic energy barrier to tunneling. Similarly, large KIE values were found for oxidations of ethylbenzene-d0 and -d10 at room temperature. The large KIE values are a function of the porphyrin identity, and porphyrins containing electron-withdrawing groups display normal KIEs. KIEs found under catalytic turnover conditions are somewhat smaller than those obtained in single turnover reactions. The results should serve as benchmarks for computational studies of C-H oxidations by porphyrin and heme-iron-oxo systems.


Assuntos
Carbono/química , Deutério/química , Hidrogênio/química , Ferro/química , Porfirinas/química , Álcool Benzílico/química , Isótopos/química , Cinética , Oxirredução
16.
J Phys Chem A ; 112(9): 1891-6, 2008 Mar 06.
Artigo em Inglês | MEDLINE | ID: mdl-18269270

RESUMO

Rate constants for 1,5- and 1,6-hydrogen atom transfer reactions in models of polyunsaturated fatty acid radicals were measured via laser flash photolysis methods. Photolyses of PTOC (pyridine-2-thioneoxycarbonyl) ester derivatives of carboxylic acids gave primary alkyl radicals that reacted by 1,5-hydrogen transfer from mono-, di-, and tri-aryl-substituted positions or 1,6-hydrogen transfer from di- and tri-aryl-substituted positions to give UV-detectable products. Rate constants for reactions in acetonitrile at room temperature ranged from 1 x 10(4) to 4 x 10(6) s(-1). The activation energies for a matched pair of 1,5- and 1,6-hydrogen atom transfers giving tri-aryl-substituted radicals were approximately equal, as were the primary kinetic isotope effects, but the 1,5-hydrogen atom transfer reaction was 1 order of magnitude faster at room temperature than the 1,6-hydrogen atom transfer reaction due to a less favorable entropy of activation for the 1,6-transfer reaction. Solvent effects on the rate constants for the 1,5-hydrogen atom transfer reaction of the 2-[2-(diphenylmethyl)phenyl]ethyl radical at ambient temperature were as large as a factor of 2 with the reaction increasing in rate in lower polarity solvents. Hybrid density functional theory computations for the 1,5- and 1,6-hydrogen atom transfers of the tri-aryl-substituted donors were in qualitative agreement with the experimental results.


Assuntos
Ácidos Graxos Insaturados/química , Hidrogênio/química , Modelos Biológicos , Computadores , Radicais Livres/química , Cinética , Modelos Moleculares , Conformação Molecular , Estrutura Molecular , Solventes/química , Espectrofotometria
17.
Proc Natl Acad Sci U S A ; 105(24): 8179-84, 2008 Jun 17.
Artigo em Inglês | MEDLINE | ID: mdl-18174331

RESUMO

The cytochrome P450 enzyme CYP119, its compound II derivative, and its nitrosyl complex were studied by iron K-edge x-ray absorption spectroscopy. The compound II derivative was prepared by reaction of the resting enzyme with peroxynitrite and had a lifetime of approximately 10 s at 23 degrees C. The CYP119 nitrosyl complex was prepared by reaction of the enzyme with nitrogen monoxide gas or with a nitrosyl donor and was stable at 23 degrees C for hours. Samples of CYP119 and its derivatives were studied by x-ray absorption spectroscopy at temperatures below 140 (K) at the Advanced Photon Source of Argonne National Laboratory. The x-ray absorption near-edge structure spectra displayed shifts in edge and pre-edge energies consistent with increasing effective positive charge on iron in the series native CYP119 < CYP119 nitrosyl complex < CYP119 compound II derivative. Extended x-ray absorption fine structure spectra were simulated with good fits for k = 12 A(-1) for native CYP119 and k = 13 A(-1) for both the nitrosyl complex and the compound II derivative. The important structural features for the compound II derivative were an iron-oxygen bond length of 1.82 A and an iron-sulfur bond length of 2.24 A, both of which indicate an iron-oxygen single bond in a ferryl-hydroxide, Fe(IV)OH, moiety.


Assuntos
Proteínas Arqueais/química , Sistema Enzimático do Citocromo P-450/química , Espécies Reativas de Oxigênio/química , Absorciometria de Fóton , Ferro/química , Óxido Nítrico/química , Ácido Peroxinitroso/química , Porfirinas/química
18.
J Org Chem ; 72(5): 1609-16, 2007 Mar 02.
Artigo em Inglês | MEDLINE | ID: mdl-17256989

RESUMO

The radical cation formed by mesylate heterolysis from the 1,1-dimethyl-7,7-diphenyl-2-mesyloxy-6-heptenyl radical was studied in several solvents. Computational results suggest that the initially formed acyclic radical cation is a resonance hybrid with partial positive charge in both double bonds of 1,1-diphenyl-7-methyl-1,6-octadiene (10). Thiophenol trapping was used as the competing reaction for kinetic determinations. The acyclic radical cation rapidly equilibrates with a cyclic distonic radical cation, and thiophenol trapping gives acyclic product 10 and cyclic products, mainly trans-1-(diphenylmethyl)-2-(1-methylethenyl)cyclopentane (11). The rate constants for cyclization at ambient temperature were k = (0.5-2) x 10(10)(s-1), and those for ring opening were k = (1.5-9) x 10(10)(s-1). Laser flash photolysis studies in several solvents show relatively slow processes (k = (2.5-260) x 10(5)(s-1) that involve rate-limiting trapping reactions for the equilibrating radical cations. In mixtures of fluoroalcohols RfCH2OH in trifluoromethylbenzene, variable-temperature studies display small, and in one case a negative, activation energies, requiring equilibration reactions prior to the rate-limiting processes. Fast equilibration of acyclic and cyclic radical cations implies that product ratios can be controlled by the populations of the acyclic and cyclic species and relative rate constants for trapping each.

19.
Org Lett ; 8(24): 5497-500, 2006 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-17107056

RESUMO

The kinetics of radical heterolysis reactions, including rate constants for radical cation-anion contact ion pair formation, collapse of the contact pair back to the parent radical, and separation of the contact pair to a solvent-separated ion pair or free ions were obtained in several solvents for a beta-mesyloxy radical. Rate constants were determined from indirect kinetic studies using thiophenol as both a radical trapping agent via H-atom transfer and an alkene radical cation trapping agent via electron transfer. [reaction: see text].

20.
J Am Chem Soc ; 128(14): 4580-1, 2006 Apr 12.
Artigo em Inglês | MEDLINE | ID: mdl-16594688

RESUMO

Cytochrome P450 enzymes (P450s) comprise a large class of enzymes that effect numerous oxidations in nature. The active oxidants in P450s are thought to be iron(IV)-oxo porphyrin radical cations termed Compounds I, and these intermediates have been sought since the discovery of P450s 40 years ago. We report formation of the Compound I derivative of a P450 enzyme by laser flash photolysis oxidation of the corresponding Compound II species, an iron(IV)-oxo neutral porphyrin intermediate. The Compound II derivative in turn was produced by oxidation of the P450 with peroxynitrite, which effected a net one-electron, oxo-transfer reaction to the iron(III) atom of the resting enzyme. For the P450 studied in this work, CYP119 from the thermophile Sulfolobus solfactaricus, the P450 Compound II derivative was stable for seconds at ambient temperature, and the Compound I transient decayed with a lifetime of ca. 200 ms.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Oxigenases/química , Proteínas Arqueais , Oxirredução , Ácido Peroxinitroso/química , Fotoquímica , Análise Espectral , Sulfolobus solfataricus/enzimologia
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