Behavior and Use of Quaternary Ammonium-Based Disinfectants in Biosafety Protocols Against Fusarium oxysporum f. sp. cubense Race 1 and Tropical Race 4.

The banana is one of Colombia's main export products. However, production is seriously affected by Fusarium wilt of banana, which is the most destructive disease caused by the fungus Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4). Currently, management strategies focus on containment and biosecurity protocols to prevent its spread to territories that are free of this disease. This study aimed to evaluate nine quaternary ammonium-based disinfectants (i.e., quaternary ammonium compounds [QACs]) in vitro in Colombia on reproductive (microconidia and macroconidia) and resistance structures (chlamydospores) of Foc race 1 (R1) and tropical race 4 (TR4), with and without soil, to determine the influence of organic matter and soil texture on the action of QACs. A method for inhibiting the action of QACs was standardized and evaluated at 1,200 ppm with a contact time of ≤30 s while evaluating the soil-inoculum and soil-disinfectant interactions. In the soil-inoculum interaction, the efficacy of QACs was 100% in the reproductive and resistance structures of Foc R1 and TR4 without soil. However, in the soil-disinfectant interaction, only QAC4 controlled the pathogen at 100%. The presence of organic matter influenced the biocidal action of the QACs, and fine textures had a greater reducing effect on the concentration. The soil decreased the efficacy of the QACs and, therefore, must be removed from contaminated boots before treatments are applied.

Quiescence as a strategic stage for the infective process of Colletotrichum species

Colletotrichum, a genus of Ascomycota fungi with a diversity of species grouped into several species complexes, or clades, is associated with diseases known as "Anthracnose". It affects significantly different tropical and subtropical fruit species. Infections occur in the field and postharvest; quiescent stages are mainly responsible for postharvest losses. An analysis of this pre-infective stage is made based on consulted papers. The infective process is modulated by the length of the quiescent period of the fungus during the vegetative or pre-productive stages of trees. Quiescent stage is determined by the host's biochemical responses and the pathogen's activity. Once the pathogen is activated, it develops an infectious necrotrophic process. Colletotrichum quiescence has been studied mainly in subtropical fruits and horticultural species, and the studies highlight the role of volatile compounds, metabolites and enzymes involved in the length and breaking of quiescence, as well as the differential responses according to the phenological stage and the genotype of the plant. Transcriptomic and proteomic analysis of the host-fungus interaction have revealed the role of genes in the occurrence and breaking of quiescence. Knowledge about the quiescence of Colletotrichum in tropical fruits is necessary to improve management efficiency. Detection and induction of quiescent infections has been studied and genomics has allowed to understand the occurrence of quiescence in the infective process; however, in crops in the tropics, such as mango, an important crop in Colombia, questions about associated species and biology of their quiescence are still unanswered.

Colletotrichum es un hongo ascomicete, con diversidad de especies agrupadas en complejos o clados y se asocia a enfermedades conocidas, como "Antracnosis" y afecta significativamente especies de frutas tropicales y subtropicales. Las infecciones ocurren en el campo y postcosecha; los estados quiescentes son los principales responsables de pérdidas en postcosecha. Se realizó un análisis de esta etapa pre-infectiva, a partir de publicaciones consultadas. La infección está modulada por la duración del período de quiescencia del hongo durante las etapas vegetativa o pre-productivas de los árboles y está determinado por las respuestas bioquímicas del hospedante y la actividad del patógeno. Una vez se activa el patógeno, se desarrolla un proceso infeccioso necrotrófico. La quiescencia de Colletotrichum se ha estudiado, principalmente, en frutas subtropicales y especies hortícolas y destacan el papel de compuestos volátiles, metabolitos y enzimas en la duración y en la pérdida de la quiescencia, así como las respuestas diferenciales, según la fenología y el genotipo. Análisis transcriptómicos y proteómicos de la interacción hospedante-hongo han revelado el papel de genes en la ocurrencia y pérdida de quiescencia. Conocer la quiescencia de Colletotrichum en frutas tropicales es necesario para hacer más eficiente el manejo de la enfermedad. Se ha estudiado la detección e inducción de infecciones quiescentes y estudios genómicos han permitido entender su ocurrencia durante la infección; sin embargo, en cultivos en el trópico, como el mango, un cultivo importante en Colombia, las preguntas sobre las especies asociadas y la biología de la quiescencia de estas, aún están sin respuesta.

Linking physiological parameters with visible/near-infrared leaf reflectance in the incubation period of vascular wilt disease.

The photosynthetic pigments are mainly responsible for absorbing the light intended to promote photosynthesis on the chloroplast of the leaves. Different studies have related the spectral response in the leaves of plants with the biotic stress generated by pathogens. In general, maximum differences in reflectance have been found in the range of 380-750 nm between plants subjected to biotic stress and healthy plants. In this study, it was possible to characterize and relate the spectral variance in leaves of S. lycopersicum infected with F. oxysporum with this physiological variation and pathogen concentration in tomato plants during the asymptomatic period of vascular wilt. Photosynthetic parameters derived from gaseous exchange analysis in the tomato leaves correlated related with four bands in the visible range (Vis). Additionally, five specific bands also present a high correlation with the increase in the concentration of F. oxysporum conidia measured at the root: 448-523 nm, 624-696 nm, 740-960 nm, 973-976 nm, and 992-995 nm. These wavelengths allowed a 100% correct classification of the plants inoculated with F. oxysporum from the plants subjected to hydric stress and the control plants in the asymptomatic period of the disease. The spectral response to biotic and abiotic stress in the measured Vis/NIR range can be explained by the general tendency to change the concentration of chlorophyll and carotene in tomato leaves. These studies also highlight the importance of the implementation of robust multivariate analysis over the multiple univariate analysis used in the applied biological sciences and specifically in the agricultural sciences. These results demonstrate that specific wavelength responses are due to physiological changes in plants subjected to stress, and can be used in indexes and algorithms applied to the early detection of diseases in plants on different pathosystems.

Genetic and metabolic biodiversity of Trichoderma from Colombia and adjacent neotropic regions.

The genus Trichoderma has been studied for production of enzymes and other metabolites, as well as for exploitation as effective biological control agents. The biodiversity of Trichoderma has seen relatively limited study over much of the neotropical region. In the current study we assess the biodiversity of 183 isolates from Mexico, Guatemala, Panama, Ecuador, Peru, Brazil and Colombia, using morphological, metabolic and genetic approaches. A comparatively high diversity of species was found, comprising 29 taxa: Trichoderma asperellum (60 isolates), Trichoderma atroviride (3), Trichoderma brevicompactum (5), Trichoderma crassum (3), Trichoderma erinaceum (3), Trichoderma gamsii (2), Trichoderma hamatum (2), Trichoderma harzianum (49), Trichoderma koningiopsis (6), Trichoderma longibrachiatum (3), Trichoderma ovalisporum (1), Trichoderma pubescens (2), Trichoderma rossicum (4), Trichoderma spirale (1), Trichoderma tomentosum (3), Trichoderma virens (8), Trichoderma viridescens (7) and Hypocrea jecorina (3) (anamorph: Trichoderma reesei), along with 11 currently undescribed species. T. asperellum was the prevalent species and was represented by two distinct genotypes with different metabolic profiles and habitat preferences. The second predominant species, T. harzianum, was represented by three distinct genotypes. The addition of 11 currently undescribed species is evidence of the considerable unresolved biodiversity of Trichoderma in neotropical regions. Sequencing of the internal transcribed spacer regions (ITS) of the ribosomal repeat could not differentiate some species, and taken alone gave several misidentifications in part due to the presence of nonorthologous copies of the ITS in some isolates.