An attempt to measure longitudinal connectivity based on the community structure of phytoplankton.

At present, there are few studies on the quantitative analysis of connectivity from the perspective of biocenology. This study aimed to develop a new quantitative assessment method for river connectivity based on the analysis of the effect of river connectivity on the phytoplankton community in the Shaying River, which has multiple gates. The results showed that from the view of the phytoplankton density and biomass, cryptophytes were the dominant phytoplankton group, but the cyanobacteria density was highest in the summer. In the top 10 of degrees of dominance, there were 4 species of cyanobacteria, 3 species of cryptophytes, 2 species of diatoms, and 1 species of chlorophytes. Based on the seasonal compositions and variations of the phytoplankton community, the river barriers had a great effect on the community. The community composition of the Shaying River has been transformed from a river-type community dominated by diatoms to a lake-type community dominated by cyanophytes. PCA (principal component analysis) indicated that there were obvious differences in the community structure among the sections partitioned by various river gates. According to the relative positions of the entire phytoplankton community and the relative sequence of the river gates, a potential gradient representing the river connectivity can be found; thus, the river connectivity can be quantitatively described from the perspective of the phytoplankton community, and hereby, the corresponding quantitative methods can be established. Characterizing the connectivity of rivers based on biota will facilitate assessing the effects of multiple barriers and understanding river connectivity, and provide the support for the effective management of rivers.

Distribution patterns of macroinvertebrate communities in a Chinese floodgate-regulated river and their relationships with river longitudinal connectivity.

In this study, the Li River and the middle-lower reaches of the Shaying River in the Shaying River basin were selected for an investigation on the effects of floodgates on macroinvertebrate communities; additionally, the relationships among floodgates, macroinvertebrate communities and river longitudinal connectivity were explored. The Li and Shaying rivers had similar ratios of molluscs and scrapers, but their species compositions were significantly different. The water level fluctuations in the Li River were based on natural hydrological characteristics, and these were very different from the fluctuations in the reaches of the Shaying River that were divided by a serious of floodgates. The effects of floodgates resulted in a reduction in the number of taxa, Shannon-Wiener index, Margalef index, and Fisher index and an increase in the Harrison index. The upper reaches of the Li and Saying rivers had similar macroinvertebrate communities, but these were very different from the lower reaches of the Saying River. The total number of species and the number of aquatic insect species increased with the river connectivity gradient and the variations in the α-diversity and ß-diversity indices along reaches confirmed the hypothesis that the longitudinal connectivity of the Shaying River was significantly affected by floodgates. The results of Pearson and PLS tests showed that some plankton variables and physical water parameters could possibly describe how the gradient of river longitudinal connectivity was related to the floodgates in the Shaying River basin. The results of partial correlations showed, even when excluding the effects of water pollution, the protozoa richness and electrical conductivity still had significant influences on the distribution patterns of macroinvertebrate communities. When considering the results of correlation analyses and regression together, these same variables could be used to describe how the gradient of river longitudinal hydrological connectivity is related to floodgates in future studies.

The Impact of Impoundment on Mercury Bioaccumulation in Fish Downstream from a Newly Constructed Reservoir, Wujiang River, Southwest China.

Mercury concentrations in fish were investigated downstream from a newly impounded subtropical reservoir in August 2008. After 6-7 months of reservoir impoundment, mean mercury concentration in fish from downstream is significantly increased by 1.9 times. Not only carnivorous fish but also benthic fish had significantly higher total mercury concentrations than others. No significant correlation was found between total mercury concentrations and body length or weight of 13 fish species. Compared with the pre-impoundment, total mercury in fish from downstream is significantly increased by reservoir impoundment, but the increased rate is lower than those in subarctic and temperate areas. Fish samples surpassed the Chinese hygienic standard for tolerances of mercury in foods increased by 4.3%. More attention should be given to fish mercury levels from downstream sites to prevent possible adverse effects on the health of local people.

MicroRNA-206 is involved in the pathogenesis of ulcerative colitis via regulation of adenosine A3 receptor.

Increasing evidence suggests that miRNAs are widely dysregulated in ulcerative colitis (UC), potentially affecting UC pathogenesis, diagnosis, and therapy. microRNA (miR) -206 has been reported to be upregulated in UC; however, its function and role in UC remain unknown. Here, we elucidate the function of miR-206 in the pathogenesis of UC. In patients with active-UC, miR-206 and adenosine A3 receptor (A3AR) levels were significantly upregulated and downregulated, respectively, and were inversely correlated. A3AR was expressed in the colon mucosa (particularly in colon epithelial-cell membranes). In HT-29 cells, miR-206 downregulated A3AR mRNA/protein expression by directly targeting the A3AR 3'-UTR; miR-206 overexpression and knockdown respectively increased and decreased TNF-α-induced nuclear NF-κB/p65, p-IκB-α, IKKα, p-IKKα and IL-8/IL-1ß secretion. However, A3AR-siRNA reversed the miR-206 inhibitory effect. Furthermore, miR-206 increased dextran sodium sulphate-induced colitis severity (i.e., increased bodyweight loss, DAI score, colon shrinkage, and MPO activity), which was partially ameliorated by miR-206-antagomir treatment. miR-206-agomir treatment potently suppressed A3AR expression and increased NF-κB signalling and downstream cytokine (TNF-α/IL-8/IL-1ß) expression in the mouse colon, in contrast to miR-206-antagomir administration. Taken together, our results demonstrated that miR-206 has a proinflammatory role in UC by downregulating A3AR expression and activating NF-κB signalling.

Macroinvertebrate communities and the relationships with biotic factors in river-connected lakes in the lower reaches of Yangtze River, China.

The relationships of macroinvertebrate communities with abiotic factors in lake and river system were well documented, but their relationships with biotic factors were few explored. The macroinvertebrate communities in two river-disconnected lakes (Poyang Lake and Shijiu Lake) and the rivers connected to Shijiu Lake were investigated to reveal the differences in communities and explore the relationships with biotic factors. A total of 34 species were recorded in the three water bodies. Combined with the previous study results, the dominant species in Poyang Lake is almost unchanged since 1997. Mollusks were dominated in abundance in Poyang Lake and the rivers connected to Shijiu Lake, while oligochaetes dominated the communities in Shijiu Lake. The alpha diversity indices of macroinvertebrates in Poyang Lake and the rivers connected to Shijiu Lake were distinctly higher than that of Shijiu Lake, and the beta diversity index of Shijiu Lake was the highest, supporting the rules that alpha diversity of macroinvertebrates achieves a maximum at a moderate level of connectivity and beta diversity seems to be higher when the connectivity is weaker. The differences in communities were significant between the Poyang Lake and Shijiu Lake, while the differences in the Poyang Lake and the rivers connected to Shijiu Lake were not significant. According to the results of canonical correspondence analysis (CCA), protozoon densities and phytoplankton biomass affected the distribution of macroinvertebrates in Shijiu Lake. Species number of planktonic crustaceans influenced the distribution of macroinvertebrates in rivers connected to Shijiu Lake, while species number of rotifer and densities of phytoplankton distinctly impacted on the distribution of macroinvertebrates in Poyang Lake.

MicroRNA-16 is putatively involved in the NF-κB pathway regulation in ulcerative colitis through adenosine A2a receptor (A2aAR) mRNA targeting.

MicroRNAs (miRNAs) act as important post-transcriptional regulators of gene expression by targeting the 3'-untranslated region of their target genes. Altered expression of miR-16 is reported in human ulcerative colitis (UC), but its role in the development of the disease remains unclear. Adenosine through adenosine A2a receptor (A2aAR) could inhibit nuclear factor-kappaB (NF-κB) signaling pathway in inflammation. Here we identified overexpression of miR-16 and down-regulation of A2aAR in the colonic mucosa of active UC patients. We demonstrated that miR-16 negatively regulated the expression of the A2aAR at the post-transcriptional level. Furthermore, transfection of miR-16 mimics promoted nuclear translocation of NF-κB p65 protein and expression of pro-inflammatory cytokines, IFN-γ and IL-8 in colonic epithelial cells. Treatment with miR-16 inhibitor could reverse these effects in cells. The A2aAR-mediated effects of miR-16 on the activation of the NF-κB signaling pathway were confirmed by the A2aAR knockdown assay. Our results suggest that miR-16 regulated the immune and inflammatory responses, at least in part, by suppressing the expression of the A2aAR to control the activation of the NF-κB signaling pathway.

Morphology and Phylogeny of Three Pleuronema Species (Ciliophora, Scuticociliatia) from Hangzhou Bay, China, with Description of Two New Species, P. binucleatum n. sp. and P. parawiackowskii n. sp.

The morphology and phylogeny of Pleuronema binucleatum n. sp., P. parawiackowskii n. sp., and P. marinum Dujardin 1841, collected from Hangzhou Bay estuary, China, were investigated using standard methods. Pleuronema binucleatum n. sp. can be identified by possessing about 90-120 × 35-50 µm cell size in vivo, reniform body outline, two macronuclei, six to eight preoral kineties, 32-41 somatic kineties, and posterior end of the anterior fragment of membranelle 2 (M2a) hook-like. Pleuronema parawiackowskii n. sp. is characterized by the combination of the following characters: body size about 60-90 × 20-40 µm in vivo, elliptical in outline, four to eight preoral kineties, 20-29 somatic kineties, posterior portion of the M2a slightly curved but nonhooked, and single macronucleus sausage-like. After comparison with other populations of P. marinum, it is suggested that many misidentifications exist in previous studies. And an improved diagnosis of P. marinum was supplied: cell about 95-180 µm long, elliptical in outline; 2-4 preoral kineties and 53-70 somatic kineties; both membranelle 1 and membranelle 3 three-rowed; posterior end of the M2a straight; single contractile vacuole characteristically positioned near mid-body. The small subunit rRNA genes of three forms were sequenced. Phylogenetic analyses indicate that the monophyly of the genus Pleuronema is still not supported.

[Succession of Phytoplankton Assemblages and Its Influencing Factors in Tangpu Reservoir, Zhejiang Province].

In order to explore the spatial-temporal dynamics of phytoplankton assemblages and its influencing factors in Tangpu Reservoir, phytoplankton and environmental variables were monthly monitored in 2011. The results showed that a total of 115 species of phytoplankton were identified, which belonged to 7 phyla and 62 genera. Phytoplankton abundance varied monthly with the maximum value (20.88×106 cells·L-1) in April and minimum (0.59×106 cells·L-1) in June. Variation partitioning of species data matrix showed that the variation of phytoplankton communities among months (account for 72.3%) was much larger than that among sampling sites (account for 2.5%), which indicated that phytoplankton communities had a high temporal but low spatial heterogeneity. Dominant species showed a marked seasonal succession pattern: diatom and blue-green algae species in spring, blue-green algae and green algae species in summer, diatom and cryptomonads species in autumn and winter. Result of multivariate analysis (RDA) indicated that HRT was the key factor affecting the shift between hydrological disturbance sensitive and tolerant species, and the formation of spring algal bloom; SiO2, WT and N:P were the key factors affecting the shift from diatom and cryptomonads species to blue-green algae and green algae species.

Morphology and molecular phylogeny of Pleuronema orientale spec. nov. and Pleuronema paucisaetosum spec. nov. (Ciliophora, Scuticociliata) from Hangzhou Bay, China.

Two novel species, Pleuronema orientale spec. nov. and Pleuronema paucisaetosum spec. nov., isolated from coastal waters of Hangzhou Bay, China, were investigated with standard methods. Pleuronema orientale is characterized as follows: size in vivo 95-135 × 50-85 µm; usually one spherical macronucleus; 12-15 prolonged caudal cilia; two or three preoral kineties and 42-50 somatic kineties; membranelle 1 (M1) about 20 % of the anterior fragment of membranelle 2 (M2a) in length, consisting of three longitudinal rows of kinetosomes; posterior end of M2a hook-like; membranelle 3 (M3) three-rowed. Pleuronema paucisaetosum is characterized as follows: size in vivo about 55-85 × 25-55 µm; four or five preoral kineties and 21-23 somatic kineties; posterior end of M2a hook-like; M3 three-rowed. The small-subunit rRNA gene was sequenced for both species. Phylogenetic analyses revealed that P. orientale is most closely related to Pleuronema puytoraci and that P. paucisaetosum is sister to Pleuronema grolierei and Pleuronema setigerum (GenBank accession no. JX310015). With the inclusion of the two new sequences, the monophyly of the genus Pleuronema is not supported.

Upregulation of microRNA-126 in hepatic stellate cells may affect pathogenesis of liver fibrosis through the NF-κB pathway.

Hepatic fibrosis, which results from chronic liver disease, currently lacks effective treatment. MicroRNAs, a group of small noncoding RNA molecules, have been observed to play an essential role in liver diseases, including hepatic fibrosis. In this study, we described the regulation of nuclear factor kappa B (NF-κB) inhibitor alpha (IκBα) and its possible signaling pathway by miR-126 in human hepatic stellate cell (HSC) line LX-2. The 3'-untranslated region (3'-UTR) of IκBα combined with miR-126 was analyzed by using a dual-luciferase reporter assay. Furthermore, the effects of miR-126 on IκBα mRNA and protein and NF-κB protein expression were assessed by real-time quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) and western blot analysis in the human HSC LX-2 cell line transfected with miR-126 mimic or inhibitor. Moreover, to understand the molecular mechanism of miR-126 in promoting liver fibrosis through NF-κB signaling pathway, the NF-κB downstream signaling factors expression such as transforming growth factor (TGF)-ß1 and collagen I mRNA were detected by real-time qRT-PCR. We identified that IκBα is a potential target gene of miR-126, by directly targeting its 3'-UTR. Endogenous miR-126 and exogenous miR-126 mimic inhibited IκBα expression. Moreover, overexpression of miR-126 reduced total and the cytoplasm IκBα protein expression and increased total and cytoblast NF-κB protein expression of LX-2. Conversely, knockdown of miR-126 could inhibit NF-κB activation by upregulation of IκBα protein expression. Further, miR-126 promoted TNF-a-induced TGF-ß1 and collagen I mRNA expression in LX-2 cells. miR-126 may play an important role in hepatic fibrosis by downregulating the expression of IκBα partly through the NF-κB signaling pathway.

Short-term impact of reservoir impoundment on the patterns of mercury distribution in a subtropical aquatic ecosystem, Wujiang River, southwest China.

Surveys on pre- and post-impoundment total mercury concentrations in water, seston and fish were conducted during 2007-2008 in the Wujiang River, southwest China. Compared with the pre-impoundment, total mercury in the reservoir and downstream water rapidly increased by 164-303 % during the first half year of flooding, and then decreased by 61.7-62.2 % after 9 months of flooding. However, total mercury in seston from the reservoir and downstream generally declined. There was no significant difference in the total mercury between reservoir fish with different habitat preference and feeding habit. We find that fish tissue mercury concentration significantly increased threefold after flooding, and the increasing rate is lower than those in subarctic and temperate reservoirs. The pre- and post-impoundment fish samples exceeding the Chinese hygienic standard for tolerances of mercury in foods increased from 1.3 to 17.4 %. Long-term monitoring of fish mercury level in Wujiang River should be undertaken to ensure local food security.

Feeding habits and habitats preferences affecting mercury bioaccumulation in 37 subtropical fish species from Wujiang River, China.

The present study is the first to report the total mercury concentration of 37 fish species collected from Wujiang River, which is the largest branch on the southern bank of Yangtze River, China and proposed for hydropower development. Total mercury concentrations varied among the 37 subtropical species examined. We found higher mercury concentrations in carnivorous species demonstrating greater mercury bioaccumulation in species with more predatory feeding habits. There is no significant difference between fish grouped by habitat preference and feeding habit. However, carnivorous species preferring benthic positions had higher total mercury concentrations than others suggesting that mercury accumulation is related to the interaction of feeding habit and habitat preference. In our study, fish that are bottom living and feed on other fish or aquatic animals are more likely at high risk of mercury exposure. Additional mercury contamination and future impoundment may raise mercury concentration in fish in the Wujiang causing concern for human health and ecological impacts.