Covariation of soil bacterial composition with plant rarity.

Rare and common plants are predicted to host different rhizospheric microbes. To evaluate this prediction, we used terminal restriction fragment length polymorphism (T-RFLP) analysis to compare rhizospheric bacteria from eight native grass species whose local abundances in their natural ecosystem spanned a 15-fold range. We observed that locally rare versus common plants are associated with divergent bacterial communities.

A fungus among us: broad patterns of endophyte distribution in the grasses.

Plant-associated microbes have been increasingly recognized for influencing host populations, plant communities, and even herbivores and predators. Thus, understanding factors that affect the distribution and abundance of microbial symbioses may be important for predicting the ecological dynamics of communities. Using endophytic fungi-grass symbioses, we explored how intrinsic traits of the symbiosis, specifically transmission mode, may influence symbiont frequencies in host populations. Combining published literature with new field surveys, we compared Epichloë endophytes, which had mixed horizontal and vertical transmission, with Neotyphodium endophytes, which were exclusively vertically transmitted from host plants to seeds. Exclusively vertical transmission should select against pathogenicity because symbionts depend entirely on hosts for reproduction. Across 118 host species, we found that Neotyphodium hosts had 40-130% higher symbiont frequencies than Epichloë hosts. In field surveys, endophyte frequency was positively correlated with the local density of hosts, but only for Epichloë, suggesting that contagiously spread Epichloë may attain higher frequencies when hosts are more abundant. Epichloë endophytes were also more likely than Neotyphodium to have imperfect vertical transmission; thus, hosts may reduce the transmission of more pathogenic symbionts to seeds. Results are consistent with the conclusion that the evolutionary transition to exclusively vertical transmission can alter patterns of symbiont frequency in nature.

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity.

The phylogeny of 13 species of Myricaceae, the most ancient actinorhizal family involved in a nitrogen-fixing symbiosis with the actinomycete Frankia, was established by the analysis of their rbcL gene and 18S-26S ITS. The phylogenetic position of those species was then compared to their specificity of association with Frankia in their natural habitat and to their nodulation potential determined on greenhouse-grown seedlings. The results showed that Genus Myrica, including M. gale and M. hartwegii, and Genus Comptonia, including C. peregrina, belong to a phylogenetic cluster distinct from the other Myrica species transferred in a new genus, Morella. This grouping parallels the natural specificity of each cluster with Comptonia-Myrica and Morella being nodulated by two phylogenetically divergent clusters of Frankia strains, the Alnus and Elaeagnaceae-infective strains clusters, respectively. Under laboratory conditions, Comptonia and Morella had a nodulation potential larger than under natural conditions. From this study it appears that the Myricaceae are split into two different specificity groups. It can be hypothesized that the early divergence of the genera led to the selection of genetically diverse Frankia strains which is contradictory to the earlier proposal that evolution has proceeded toward narrower promiscuity within the family.

Diversity of Frankia strains associated to Myrica gale in Western Europe: impact of host plant (Myrica vs. Alnus) and of edaphic factors.

Myricaceae can be nodulated by a variety of Frankia strains isolated from other actinorhizal families. Consequently, the genus Myrica has been considered to have low specificity with respect to microsymbiont taxa. In contrast to controlled studies of Myrica infectious capacity, field studies in North America have indicated that M. gale symbionts belong to the genetic group of Alnus-infective strains. Myrica gale is the most widely distributed species in the genus so this study focused on describing the genetic diversity of M. gale-nodulating strains from 10 sites in Western Europe across a range of edaphic conditions. When possible, the specificity of M. gale-infective strains was compared with that of Alnus-infective strains from the same sites. Nodular strains from Belgium, France and Spain were characterized using PCR-RFLP of rrs gene and 16S-23S IGS. rrs-RFLP patterns showed a high level of homogeneity among European strains with one dominant genotype. IGS-RFLP patterns revealed the largest inter and intrasite diversity in France. In Belgium, Frankia strains were found to occur in two groups according to soil pH and organic matter characteristics of the sites. European M. gale-infective strains were genetically different from European Alnus and North American M. gale-infective strains indicating the possibility of different pathways of co-evolution among geographically isolated populations.