Theoretical Investigations on the Plasmon-Mediated Dissociation of Small Molecules in the Presence of Silver Atomic Wires.

Plasmonic nanoparticles can promote bond activation in adsorbed molecules under relatively benign conditions via excitation of the nanoparticle's plasmon resonance. As the plasmon resonance often falls within the visible light region, plasmonic nanomaterials are a promising class of catalysts. However, the exact mechanisms through which plasmonic nanoparticles activate the bonds of nearby molecules are still unclear. Herein, we evaluate Ag8-X2 (X = N, H) model systems via real-time time-dependent density functional theory (RT-TDDFT), linear response time-dependent density functional theory (LR-TDDFT), and Ehrenfest dynamics in order to better understand the bond activation processes of N2 and H2 facilitated by the presence of the atomic silver wire under excitation at the plasmon resonance energies. We find that dissociation is possible for both small molecules at high electric field strength. Activation of each adsorbate is symmetry- and electric field-dependent, and H2 activates at lower electric field strengths than N2. This work serves as a step toward understanding the complex time-dependent electron and electron-nuclear dynamics between plasmonic nanowires and adsorbed small molecules.

Computational Study of Methane C-H Activation by Diiminopyridine Nitride/Nitridyl Complexes of 3d Transition Metals and Main-Group Elements.

The C-H bond activation of methane using Ph,MePDI-M≡N [Ph,MePDI = 2,6-(PhN═CMe)2C5H3N] (M = V, Mn, Fe, Co, Ni, Al, or P) has been studied via three reaction pathways: [2σ + 2π] addition, hydrogen atom abstraction (HAA), and direct insertion. The activating ligand is a nitride/nitridyl (N), with diiminopyridine (PDI) as the supporting ligand. Calculations show reasonable C-H activation barriers for Co, Ni, Al, and P Ph,MePDI nitrides, complexes that favor an HAA pathway. Electrophilic Ph,MePDI nitride complexes of the earlier metals with a nucleophilic actor ligand-V, Mn, Fe-follow a [2σ + 2π] addition pathway for methane activation. Free energy barriers for methyl migration, Ph,MePDI-M(CH3)═NH → Ph,MePDI-M-N(H)CH3, are also interesting in the context of alkane functionalization; discriminating factors in this mechanistic step include the strengths of the σ-bond and metal-actor ligand π-bond that are broken and the electrophilicity of the actor ligand to which methyl migrates.

Evaluating electronic structure methods for accurate calculation of 19 F chemical shifts in fluorinated amino acids.

The ability of electronic structure methods (11 density functionals, HF, and MP2 calculations; two basis sets and two solvation models) to accurately calculate the 19 F chemical shifts of 31 structures of fluorinated amino acids and analogues with known experimental 19 F NMR spectra has been evaluated. For this task, BHandHLYP, ωB97X, and Hartree-Fock with scaling factors (provided within) are most accurate. Additionally, the accuracy of methods to calculate relative changes in fluorine shielding across 23 sets of structural variants, such as zwitterionic amino acids versus side chains only, was also determined. This latter criterion may be a better indicator of reliable methods for the ultimate goal of assigning and interpreting chemical shifts of fluorinated amino acids in proteins. It was found that MP2 and M062X calculations most accurately assess changes in shielding among analogues. These results serve as a guide for computational developments to calculate 19 F chemical shifts in biomolecular environments. © 2017 Wiley Periodicals, Inc.

New Insights into the Dynamics of Zwitterionic Micelles and Their Hydration Waters by Gigahertz-to-Terahertz Dielectric Spectroscopy.

Gigahertz-to-terahertz spectroscopy of macromolecules in aqueous environments provides an important approach for identifying their global and transient molecular structures, as well as directly assessing hydrogen-bonding. We report dielectric properties of zwitterionic dodecylphosphocholine (DPC) micelles in aqueous solutions over a wide frequency range, from 50 MHz to 1.12 THz. The dielectric relaxation spectra reveal different polarization mechanisms at the molecular level, reflecting the complexity of DPC micelle-water interactions. We have made a deconvolution of the spectra into different components and combined them with the effective-medium approximation to separate delicate processes of micelles in water. Our measurements demonstrate reorientational motion of the DPC surfactant head groups within the micelles, and two levels of hydration water shells, including tightly and loosely bound hydration water layers. From the dielectric strength of bulk water in DPC solutions, we found that the number of waters in hydration shells is approximately constant at 950 ± 45 water molecules per micelle in DPC concentrations up to 400 mM, and it decreases after that. At terahertz frequencies, employing the effective-medium approximation, we estimate that each DPC micelle is surrounded by a tightly bound layer of 310 ± 45 water molecules that behave as if they are an integral part of the micelle. Combined with molecular dynamics simulations, we determine that tightly bound waters are directly hydrogen-bonded to oxygens of DPC, while loosely bound waters reside within 4 Å of micellar atoms. The dielectric response of DPC micelles at terahertz frequencies yields, for the first time, experimental information regarding the largest scale, lowest frequency collective motions in micelles. DPC micelles are a relatively simple biologically relevant system, and this work paves the way for more insight into future studies of hydration and dynamics of biomolecular systems with gigahertz-to-terahertz spectroscopy.