Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 21
Filtrar
1.
Comput Biol Med ; 151(Pt A): 106222, 2022 12.
Artigo em Inglês | MEDLINE | ID: mdl-36343406

RESUMO

The high precedence of epidemiological examination of skin lesions necessitated the well-performing efficient classification and segmentation models. In the past two decades, various algorithms, especially machine/deep learning-based methods, replicated the classical visual examination to accomplish the above-mentioned tasks. These automated streams of models demand evident lesions with less background and noise affecting the region of interest. However, even after the proposal of these advanced techniques, there are gaps in achieving the efficacy of matter. Recently, many preprocessors proposed to enhance the contrast of lesions, which further aided the skin lesion segmentation and classification tasks. Metaheuristics are the methods used to support the search space optimisation problems. We propose a novel Hybrid Metaheuristic Differential Evolution-Bat Algorithm (DE-BA), which estimates parameters used in the brightness preserving contrast stretching transformation function. For extensive experimentation we tested our proposed algorithm on various publicly available databases like ISIC 2016, 2017, 2018 and PH2, and validated the proposed model with some state-of-the-art already existing segmentation models. The tabular and visual comparison of the results concluded that DE-BA as a preprocessor positively enhances the segmentation results.


Assuntos
Melanoma , Dermatopatias , Neoplasias Cutâneas , Humanos , Dermoscopia/métodos , Melanoma/diagnóstico , Neoplasias Cutâneas/diagnóstico , Heurística , Algoritmos , Dermatopatias/diagnóstico por imagem , Processamento de Imagem Assistida por Computador/métodos
2.
BMB Rep ; 54(10): 497-504, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34488929

RESUMO

EGR1 (early growth response 1) is dysregulated in many cancers and exhibits both tumor suppressor and promoter activities, making it an appealing target for cancer therapy. Here, we used a systematic multi-omics analysis to review the expression of EGR1 and its role in regulating clinical outcomes in breast cancer (BC). EGR1 expression, its promoter methylation, and protein expression pattern were assessed using various publicly available tools. COSMIC-based somatic mutations and cBioPortal-based copy number alterations were analyzed, and the prognostic roles of EGR1 in BC were determined using Prognoscan and Kaplan-Meier Plotter. We also used bc-GenEx- Miner to investigate the EGR1 co-expression profile. EGR1 was more often downregulated in BC tissues than in normal breast tissue, and its knockdown was positively correlated with poor survival. Low EGR1 expression levels were also associated with increased risk of ER+, PR+, and HER2- BCs. High positive correlations were observed among EGR1, DUSP1, FOS, FOSB, CYR61, and JUN mRNA expression in BC tissue. This systematic review suggested that EGR1 expression may serve as a prognostic marker for BC patients and that clinicopathological parameters influence its prognostic utility. In addition to EGR1, DUSP1, FOS, FOSB, CYR61, and JUN can jointly be considered prognostic indicators for BC. [BMB Reports 2021; 54(10): 497-504].


Assuntos
Neoplasias da Mama/metabolismo , Proteína 1 de Resposta de Crescimento Precoce/metabolismo , Biomarcadores Tumorais/metabolismo , Metilação de DNA/genética , Bases de Dados Genéticas , Proteína 1 de Resposta de Crescimento Precoce/genética , Feminino , Expressão Gênica/genética , Regulação Neoplásica da Expressão Gênica/genética , Genes Supressores de Tumor , Humanos , Estimativa de Kaplan-Meier , Prognóstico , Regiões Promotoras Genéticas/genética , Transcriptoma/genética
3.
Comput Struct Biotechnol J ; 19: 4003-4017, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34377366

RESUMO

Resistance to therapy remains a major cause of cancer treatment failures, resulting in many cancer-related deaths. Resistance can occur at any time during the treatment, even at the beginning. The current treatment plan is dependent mainly on cancer subtypes and the presence of genetic mutations. Evidently, the presence of a genetic mutation does not always predict the therapeutic response and can vary for different cancer subtypes. Therefore, there is an unmet need for predictive models to match a cancer patient with a specific drug or drug combination. Recent advancements in predictive models using artificial intelligence have shown great promise in preclinical settings. However, despite massive improvements in computational power, building clinically useable models remains challenging due to a lack of clinically meaningful pharmacogenomic data. In this review, we provide an overview of recent advancements in therapeutic response prediction using machine learning, which is the most widely used branch of artificial intelligence. We describe the basics of machine learning algorithms, illustrate their use, and highlight the current challenges in therapy response prediction for clinical practice.

4.
Comput Biol Med ; 134: 104532, 2021 07.
Artigo em Inglês | MEDLINE | ID: mdl-34102402

RESUMO

Sleep apnea is a common symptomatic disease affecting nearly 1 billion people around the world. The gold standard approach for determining the severity of sleep apnea is full-night polysomnography conducted in the laboratory, which is very costly and cumbersome. In this work, we propose a novel scalogram-based convolutional neural network (SCNN) to detect obstructive sleep apnea (OSA) using single-lead electrocardiogram (ECG) signals. Firstly, we use continuous wavelet transform (CWT) to convert ECG signals into conventional scalograms. In parallel, we also apply empirical mode decomposition (EMD) to the signals to find correlated intrinsic mode functions (IMFs) and then apply CWT on the IMFs to obtain hybrid scalograms. Finally, we train a lightweight CNN model on these scalograms to extract deep features for OSA detection. Experiments on the benchmark Apnea-ECG dataset demonstrate that our proposed model results in an accuracy of 94.30%, sensitivity 94.30%, specificity 94.51%, and F1-score 95.85% in per-segment classification. Our model also achieves an accuracy of 81.86%, sensitivity 71.62%, specificity 86.05%, and F1-score 69.63% for UCDDB dataset. Furthermore, our model achieves an accuracy of 100.00% in per-recording classification for Apnea-ECG dataset. The experimental results outperform the existing OSA detection approaches using ECG signals.


Assuntos
Síndromes da Apneia do Sono , Apneia Obstrutiva do Sono , Eletrocardiografia , Humanos , Redes Neurais de Computação , Polissonografia , Apneia Obstrutiva do Sono/diagnóstico
5.
Diagnostics (Basel) ; 11(4)2021 Mar 29.
Artigo em Inglês | MEDLINE | ID: mdl-33805471

RESUMO

Chronic diseases are becoming more widespread. Treatment and monitoring of these diseases require going to hospitals frequently, which increases the burdens of hospitals and patients. Presently, advancements in wearable sensors and communication protocol contribute to enriching the healthcare system in a way that will reshape healthcare services shortly. Remote patient monitoring (RPM) is the foremost of these advancements. RPM systems are based on the collection of patient vital signs extracted using invasive and noninvasive techniques, then sending them in real-time to physicians. These data may help physicians in taking the right decision at the right time. The main objective of this paper is to outline research directions on remote patient monitoring, explain the role of AI in building RPM systems, make an overview of the state of the art of RPM, its advantages, its challenges, and its probable future directions. For studying the literature, five databases have been chosen (i.e., science direct, IEEE-Explore, Springer, PubMed, and science.gov). We followed the (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) PRISMA, which is a standard methodology for systematic reviews and meta-analyses. A total of 56 articles are reviewed based on the combination of a set of selected search terms including RPM, data mining, clinical decision support system, electronic health record, cloud computing, internet of things, and wireless body area network. The result of this study approved the effectiveness of RPM in improving healthcare delivery, increase diagnosis speed, and reduce costs. To this end, we also present the chronic disease monitoring system as a case study to provide enhanced solutions for RPMs.

6.
Micromachines (Basel) ; 12(4)2021 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-33800534

RESUMO

In this work, a comparative investigation of chaotic flow behavior inside multi-layer crossing channels was numerically carried out to select suitable micromixers. New micromixers were proposed and compared with an efficient passive mixer called a Two-Layer Crossing Channel Micromixer (TLCCM), which was investigated recently. The computational evaluation was a concern to the mixing enhancement and kinematic measurements, such as vorticity, deformation, stretching, and folding rates for various low Reynolds number regimes. The 3D continuity, momentum, and species transport equations were solved by a Fluent ANSYS CFD code. For various cases of fluid regimes (0.1 to 25 values of Reynolds number), the new configuration displayed a mixing enhancement of 40%-60% relative to that obtained in the older TLCCM in terms of kinematic measurement, which was studied recently. The results revealed that all proposed micromixers have a strong secondary flow, which significantly enhances the fluid kinematic performances at low Reynolds numbers. The visualization of mass fraction and path-lines presents that the TLCCM configuration is inefficient at low Reynolds numbers, while the new designs exhibit rapid mixing with lower pressure losses. Thus, it can be used to enhance the homogenization in several microfluidic systems.

7.
Sci Rep ; 11(1): 2660, 2021 01 29.
Artigo em Inglês | MEDLINE | ID: mdl-33514817

RESUMO

Alzheimer's disease (AD) is the most common type of dementia. Its diagnosis and progression detection have been intensively studied. Nevertheless, research studies often have little effect on clinical practice mainly due to the following reasons: (1) Most studies depend mainly on a single modality, especially neuroimaging; (2) diagnosis and progression detection are usually studied separately as two independent problems; and (3) current studies concentrate mainly on optimizing the performance of complex machine learning models, while disregarding their explainability. As a result, physicians struggle to interpret these models, and feel it is hard to trust them. In this paper, we carefully develop an accurate and interpretable AD diagnosis and progression detection model. This model provides physicians with accurate decisions along with a set of explanations for every decision. Specifically, the model integrates 11 modalities of 1048 subjects from the Alzheimer's Disease Neuroimaging Initiative (ADNI) real-world dataset: 294 cognitively normal, 254 stable mild cognitive impairment (MCI), 232 progressive MCI, and 268 AD. It is actually a two-layer model with random forest (RF) as classifier algorithm. In the first layer, the model carries out a multi-class classification for the early diagnosis of AD patients. In the second layer, the model applies binary classification to detect possible MCI-to-AD progression within three years from a baseline diagnosis. The performance of the model is optimized with key markers selected from a large set of biological and clinical measures. Regarding explainability, we provide, for each layer, global and instance-based explanations of the RF classifier by using the SHapley Additive exPlanations (SHAP) feature attribution framework. In addition, we implement 22 explainers based on decision trees and fuzzy rule-based systems to provide complementary justifications for every RF decision in each layer. Furthermore, these explanations are represented in natural language form to help physicians understand the predictions. The designed model achieves a cross-validation accuracy of 93.95% and an F1-score of 93.94% in the first layer, while it achieves a cross-validation accuracy of 87.08% and an F1-Score of 87.09% in the second layer. The resulting system is not only accurate, but also trustworthy, accountable, and medically applicable, thanks to the provided explanations which are broadly consistent with each other and with the AD medical literature. The proposed system can help to enhance the clinical understanding of AD diagnosis and progression processes by providing detailed insights into the effect of different modalities on the disease risk.


Assuntos
Doença de Alzheimer/diagnóstico por imagem , Inteligência Artificial , Encéfalo/diagnóstico por imagem , Bases de Dados Factuais , Imageamento por Ressonância Magnética , Modelos Neurológicos , Neuroimagem , Idoso , Idoso de 80 Anos ou mais , Feminino , Seguimentos , Humanos , Masculino , Pessoa de Meia-Idade
8.
Sensors (Basel) ; 20(24)2020 Dec 09.
Artigo em Inglês | MEDLINE | ID: mdl-33317023

RESUMO

In this paper, a novel interference free dual-hop device-to-device (D2D) aided cooperative relaying strategy (CRS) based on spatial modulation (SM) (termed D2D-CRS-SM) is proposed. In D2D-CRS-SM, two cellular users (e.g., a near user (NU) and a relay-aided far user (FU)) and a pair of D2D transmitter (D1)-receivers (D2) are served in two time-slots. Two different scenarios are investigated considering information reception criteria at the NU. Irrespective of the scenarios, the base station (BS) exploits SM to map information bits into two sets: modulation bits and antenna index, in phase-1. In the first scenario, the BS maps FU information as the modulation bits and NU information as antenna index, whereas modulation bits correspond to NU information and the antenna index carries FU's information in scenario-2. The iterative-maximum ratio combining (i-MRC) technique is then used by NU and D1 to de-map their desired information bits. During phase-2, D1 also exploits SM to forward FU's information received from BS and its own information bits to the D2D receiver D2. Then, FU and D2 retrieve their desired information by using i-MRC. Due to exploiting SM in both phases, interference free information reception is possible at each receiving node without allocating any fixed transmit power. The performance of D2D-CRS-SM is studied in terms of bit-error rate and spectral efficiency considering M-ary phase shift keying and quadrature amplitude modulation. Finally, the efficiency of D2D-CRS-SM is demonstrated via the Monte Carlo simulation.

9.
Sensors (Basel) ; 20(20)2020 Oct 20.
Artigo em Inglês | MEDLINE | ID: mdl-33092224

RESUMO

With the development of Internet of Things (IoT) applications, applying the potential and benefits of IoT technology in the health and environment services is increasing to improve the service quality using sensors and devices. This paper aims to apply GIS-based optimization algorithms for optimizing IoT-based network deployment through the use of wireless sensor networks (WSNs) and smart connected sensors for environmental and health applications. First, the WSN deployment research studies in health and environment applications are reviewed including fire monitoring, precise agriculture, telemonitoring, smart home, and hospital. Second, the WSN deployment process is modeled to optimize two conflict objectives, coverage and lifetime, by applying Minimum Spanning Tree (MST) routing protocol with minimum total network lengths. Third, the performance of the Bees Algorithm (BA) and Particle Swarm Optimization (PSO) algorithms are compared for the evaluation of GIS-based WSN deployment in health and environment applications. The algorithms were compared using convergence rate, constancy repeatability, and modeling complexity criteria. The results showed that the PSO algorithm converged to higher values of objective functions gradually while BA found better fitness values and was faster in the first iterations. The levels of stability and repeatability were high with 0.0150 of standard deviation for PSO and 0.0375 for BA. The PSO also had lower complexity than BA. Therefore, the PSO algorithm obtained better performance for IoT-based sensor network deployment.


Assuntos
Redes de Comunicação de Computadores , Tecnologia sem Fio , Agricultura , Algoritmos , Internet
10.
Sensors (Basel) ; 20(15)2020 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-32731596

RESUMO

Software-Defined Networking (SDN) offers an abstract view of the network and assists network operators to control the network traffic and the associated network resources more effectively. For the past few years, SDN has shown a lot of merits in diverse fields of applications, an important one being the Wireless Body Area Network (WBAN) for healthcare services. With the amalgamation of SDN with WBAN (SDWBAN), the patient monitoring and management system has gained much more flexibility and scalability compared to the conventional WBAN. However, the performance of the SDWBAN framework largely depends on the controller which is a core element of the control plane. The reason is that an optimal number of controllers assures the satisfactory level of performance and control of the network traffic originating from the underlying data plane devices. This paper proposes a mathematical model to determine the optimal number of controllers for the SDWBAN framework in healthcare applications. To achieve this goal, the proposed mathematical model adopts the convex optimization method and incorporates three critical SDWBAN factors in the design process: number of controllers, latency and number of SDN-enabled switches (SDESW). The proposed analytical model is validated by means of simulations in Castalia 3.2 and the outcomes indicate that the network achieves high level of Packet Delivery Ratio (PDR) and low latency for optimal number of controllers as derived in the mathematical model.


Assuntos
Software , Redes de Comunicação de Computadores , Atenção à Saúde , Humanos , Modelos Teóricos , Monitorização Fisiológica
11.
Sensors (Basel) ; 20(2)2020 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-31963887

RESUMO

In post-disaster scenarios, such as after floods, earthquakes, and in war zones, the cellular communication infrastructure may be destroyed or seriously disrupted. In such emergency scenarios, it becomes very important for first aid responders to communicate with other rescue teams in order to provide feedback to both the central office and the disaster survivors. To address this issue, rapidly deployable systems are required to re-establish connectivity and assist users and first responders in the region of incident. In this work, we describe the design, implementation, and evaluation of a rapidly deployable system for first response applications in post-disaster situations, named RDSP. The proposed system helps early rescue responders and victims by sharing their location information to remotely located servers by utilizing a novel routing scheme. This novel routing scheme consists of the Dynamic ID Assignment (DIA) algorithm and the Minimum Maximum Neighbor (MMN) algorithm. The DIA algorithm is used by relay devices to dynamically select their IDs on the basis of all the available IDs of networks. Whereas, the MMN algorithm is used by the client and relay devices to dynamically select their next neighbor relays for the transmission of messages. The RDSP contains three devices; the client device sends the victim's location information to the server, the relay device relays information between client and server device, the server device receives messages from the client device to alert the rescue team. We deployed and evaluated our system in the outdoor environment of the university campus. The experimental results show that the RDSP system reduces the message delivery delay and improves the message delivery ratio with lower communication overhead.


Assuntos
Redes de Comunicação de Computadores , Desastres , Trabalho de Resgate , Tecnologia sem Fio , Algoritmos , Serviços Médicos de Emergência , Humanos
12.
Sensors (Basel) ; 21(1)2020 Dec 31.
Artigo em Inglês | MEDLINE | ID: mdl-33396328

RESUMO

With the rapid development of mobile communication and the sharp increase of smart mobile devices, wireless data traffic has experienced explosive growth in recent years, thus injecting tremendous traffic into the network. Fog Radio Access Network (F-RAN) is a promising wireless network architecture to accommodate the fast growing data traffic and improve the performance of network service. By deploying content caching in F-RAN, fast and repeatable data access can be achieved, which reduces network traffic and transmission latency. Due to the capacity limit of caches, it is essential to predict the popularity of the content and pre-cache them in edge nodes. In general, the classic prediction approaches require the gathering of users' personal information at a central unit, giving rise to users' privacy issues. In this paper, we propose an intelligent F-RANs framework based on federated learning (FL), which does not require gathering user data centrally on the server for training, so it can effectively ensure the privacy of users. In the work, federated learning is applied to user demand prediction, which can accurately predict the content popularity distribution in the network. In addition, to minimize the total traffic cost of the network in consideration of user content requests, we address the allocation of storage resources and content placement in the network as an integrated model and formulate it as an Integer Linear Programming (ILP) problem. Due to the high computational complexity of the ILP problem, two heuristic algorithms are designed to solve it. Simulation results show that the performance of our proposed algorithm is close to the optimal solution.

13.
Cancer Gene Ther ; 27(3-4): 147-167, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-31164716

RESUMO

Prominin 1 (PROM1) is considered a biomarker for cancer stem cells, although its biological role is unclear. Prominin 2 (PROM2) has also been associated with certain cancers. However, the prognostic value of PROM1 and PROM2 in cancer is controversial. Here, we performed a systematic data analysis to examine whether prominins can function as prognostic markers in human cancers. The expression of prominins was assessed and their prognostic value in human cancers was determined using univariate and multivariate survival analyses, via various online platforms. We selected a group of prominent functional protein partners of prominins by protein-protein interaction analysis. Subsequently, we investigated the relationship between mutations and copy number alterations in prominin genes and various types of cancers. Furthermore, we identified genes that correlated with PROM1 and PROM2 in certain cancers, based on their levels of expression. Gene ontology and pathway analyses were performed to assess the effect of these correlated genes on various cancers. We observed that PROM1 was frequently overexpressed in esophageal, liver, and ovarian cancers and its expression was negatively associated with prognosis, whereas PROM2 overexpression was associated with poor overall survival in lung and ovarian cancers. Based on the varying characteristics of prominins, we conclude that PROM1 and PROM2 expression differentially modulates the clinical outcomes of cancers.


Assuntos
Antígeno AC133/genética , Regulação Neoplásica da Expressão Gênica , Glicoproteínas de Membrana/genética , Neoplasias/genética , Análise Mutacional de DNA , Conjuntos de Dados como Assunto , Perfilação da Expressão Gênica , Humanos , Mutação , Neoplasias/mortalidade , Neoplasias/patologia , Prognóstico , Mapeamento de Interação de Proteínas , Mapas de Interação de Proteínas/genética , Análise de Sobrevida
14.
Sensors (Basel) ; 19(18)2019 Sep 19.
Artigo em Inglês | MEDLINE | ID: mdl-31546764

RESUMO

Static sink-based wireless sensor networks (WSNs) suffer from an energy-hole problem. This incurs as the rate of energy consumption on sensor nodes around sinks and on critical paths is considerably faster. State-of-the-art en-routing filtering schemes save energy by countering false report injection attacks. In addition to their unique limitations, these schemes generally do not examine energy awareness in underlying routing. Mostly, these security methods are based on a fixed filtering capacity, unable to respond to changes in attack intensity. Therefore, these limitations cause network partition(s), exhibiting adverse effects on network lifetime. Extending network lifetime while preserving energy and security thus becomes an interesting challenge. In this article, we address the aforesaid shortcomings with the proposed adaptive en-route filtering (AEF) scheme. In energy-aware routing, the fitness function, which is used to select forwarding nodes, considers residual energy and other factors as opposed to distance only. In pre-deterministic key distribution, keys are distributed based on the consideration of having paths with a different number of verification nodes. This, consequently, permits us to have multiple paths with different security levels that can be exploited to counter different attack intensities. Taken together, the integration of the special fitness function with the new key distribution approach enables the AEF to adapt the underlying dynamic network conditions. The simulation experiments under different settings show significant improvements in network lifetime.

15.
Sensors (Basel) ; 19(17)2019 Aug 31.
Artigo em Inglês | MEDLINE | ID: mdl-31480479

RESUMO

There is a strong devotion in the automotive industry to be part of a wider progression towards the Fifth Generation (5G) era. In-vehicle integration costs between cellular and vehicle-to-vehicle networks using Dedicated Short Range Communication could be avoided by adopting Cellular Vehicle-to-Everything (C-V2X) technology with the possibility to re-use the existing mobile network infrastructure. More and more, with the emergence of Software Defined Networks, the flexibility and the programmability of the network have not only impacted the design of new vehicular network architectures but also the implementation of V2X services in future intelligent transportation systems. In this paper, we define the concepts that help evaluate software-defined-based vehicular network systems in the literature based on their modeling and implementation schemes. We first overview the current studies available in the literature on C-V2X technology in support of V2X applications. We then present the different architectures and their underlying system models for LTE-V2X communications. We later describe the key ideas of software-defined networks and their concepts for V2X services. Lastly, we provide a comparative analysis of existing SDN-based vehicular network system grouped according to their modeling and simulation concepts. We provide a discussion and highlight vehicular ad-hoc networks' challenges handled by SDN-based vehicular networks.

16.
J Clin Med ; 8(4)2019 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-30991713

RESUMO

C1QBP (Complement Component 1 Q Subcomponent-Binding Protein), a multicompartmental protein, participates in various cellular processes, including mRNA splicing, ribosome biogenesis, protein synthesis in mitochondria, apoptosis, transcriptional regulation, and infection processes of viruses. The correlation of C1QBP expression with patient survival and molecular function of C1QBP in relation to cancer progression has not been comprehensively studied. Therefore, we sought to systematically investigate the expression of C1QBP to evaluate the change of C1QBP expression and the relationship with patient survival and affected pathways in breast, lung, colon, and bladder cancers as well as lymphoma. Relative expression levels of C1QBP were analyzed using the Oncomine, Gene Expression Across Normal and Tumor Tissue (GENT), and The Cancer Genome Atlas (TCGA) databases. Mutations and copy number alterations in C1QBP were also analyzed using cBioPortal, and subsequently, the relationship between C1QBP expression and survival probability of cancer patients was explored using the PrognoScan database and the R2: Kaplan Meier Scanner. Additionally, the relative expression of C1QBP in other cancers, and correlation of C1QBP expression with patient survival were investigated. Gene ontology and pathway analysis of commonly differentially coexpressed genes with C1QBP in breast, lung, colon, and bladder cancers as well as lymphoma revealed the C1QBP-correlated pathways in these cancers. This data-driven study demonstrates the correlation of C1QBP expression with patient survival and identifies possible C1QBP-involved pathways, which may serve as targets of a novel therapeutic modality for various human cancers.

17.
J Clin Med ; 8(3)2019 Mar 13.
Artigo em Inglês | MEDLINE | ID: mdl-30871151

RESUMO

Kidney-type glutaminase (GLS) and liver-type glutaminase (GLS2) are dysregulated in many cancers, making them appealing targets for cancer therapy. However, their use as prognostic biomarkers is controversial and remains an active area of cancer research. Here, we performed a systematic multiomic analysis to determine whether glutaminases function as prognostic biomarkers in human cancers. Glutaminase expression and methylation status were assessed and their prominent functional protein partners and correlated genes were identified using various web-based bioinformatics tools. The cross-cancer relationship of glutaminases with mutations and copy number alterations was also investigated. Gene ontology (GO) and pathway analysis were performed to assess the integrated effect of glutaminases and their correlated genes on various cancers. Subsequently, the prognostic roles of GLS and GLS2 in human cancers were mined using univariate and multivariate survival analyses. GLS was frequently over-expressed in breast, esophagus, head-and-neck, and blood cancers, and was associated with a poor prognosis, whereas GLS2 overexpression implied poor overall survival in colon, blood, ovarian, and thymoma cancers. Both GLS and GLS2 play oncogenic and anti-oncogenic roles depending on the type of cancer. The varying prognostic characteristics of glutaminases suggest that GLS and GLS2 expression differentially modulate the clinical outcomes of cancers.

18.
Mol Ther Nucleic Acids ; 14: 212-238, 2019 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-30641475

RESUMO

Targeted genome editing is an advanced technique that enables precise modification of the nucleic acid sequences in a genome. Genome editing is typically performed using tools, such as molecular scissors, to cut a defined location in a specific gene. Genome editing has impacted various fields of biotechnology, such as agriculture; biopharmaceutical production; studies on the structure, regulation, and function of the genome; and the creation of transgenic organisms and cell lines. Although genome editing is used frequently, it has several limitations. Here, we provide an overview of well-studied genome-editing nucleases, including single-stranded oligodeoxynucleotides (ssODNs), transcription activator-like effector nucleases (TALENs), zinc-finger nucleases (ZFNs), and CRISPR-Cas9 RNA-guided nucleases (CRISPR-Cas9). To this end, we describe the progress toward editable nuclease-based therapies and discuss the minimization of off-target mutagenesis. Future prospects of this challenging scientific field are also discussed.

19.
IEEE Trans Nanobioscience ; 14(6): 680-3, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-26335557

RESUMO

Molecular communication in nanonetworks is an emerging communication paradigm that uses molecules as information carriers. In molecule shift keying (MoSK), where different types of molecules are used for encoding, transmitter and receiver complexities increase as the modulation order increases. We propose a modulation technique called depleted MoSK (D-MoSK) in which, molecules are released if the information bit is 1 and no molecule is released for 0. The proposed scheme enjoys reduced number of the types of molecules for encoding. Numerical results show that the achievable rate is considerably higher and symbol error rate (SER) performance is better in the proposed technique.


Assuntos
Computadores Moleculares , Nanotecnologia/métodos , Comunicação , Difusão
20.
J Med Syst ; 36(3): 1553-67, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21046206

RESUMO

Wireless personal area network (WPAN) is an emerging in wireless technology for short range indoor and outdoor communication applications. A more specific category of WPAN is the wireless body area network (WBAN) used for health monitoring. On the other hand, multiband orthogonal frequency division multiplexing (MB-OFDM) ultra-wideband (UWB) comes with a number of desirable features at the physical layer for wireless communications, for example, very high data rate. One big challenge in adoption of multiband UWB in WBAN is the fact that channel estimation becomes difficult under the constraint of extremely low transmission power. Moreover, the heterogeneous environment of WBAN causes a dense multipath wireless channel. Therefore, effective channel estimation is required in the receiver of WBAN-based healthcare system that uses multiband UWB. In this paper, we first outline the MB-OFDM UWB system. Then, we present an overview of channel estimation techniques proposed/investigated for multiband UWB communications with emphasis on their strengths and weaknesses. Useful suggestions are given to overcome the weaknesses so that these methods can be particularly useful for WBAN channels. Also, we analyze the comparative performances of the techniques using computer simulation in order to find the energy-efficient channel estimation methods for WBAN-based healthcare systems.


Assuntos
Radiação Eletromagnética/classificação , Tecnologia de Sensoriamento Remoto , Tecnologia sem Fio , Algoritmos , Redes de Comunicação de Computadores/instrumentação , Estudos de Viabilidade
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA
...