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1.
J Phys Chem A ; 111(32): 7777-86, 2007 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-17645317

RESUMO

Yields for H2, H(.) atom, and hydrated electron production in beta/gamma radiolysis of water have been measured from room temperature up to 400 degrees C on a 250 bar isobar, and also as a function of pressure (density) at 380 and 400 degrees C. Radiolysis was carried out using a beam of 2-3 MeV electrons from a van de Graaff accelerator, and detection was by mass spectrometer analysis of gases sparged from the irradiated water. N2O was used as a specific scavenger for hydrated electrons giving N2 as product. Ethanol-d(6) was used to scavenge H(.) atoms, giving HD as a stable product. It is found that the hydrated electron yield decreases and the H(.) atom yield increases dramatically at lower densities in supercritical water, and the overall escape yield increases. The yield of molecular H2 increases with temperature and does not tend toward zero at low density, indicating that it is formed promptly rather than in spur recombination. A minimum in both the radical and H2 yields is observed around 0.4 kg/dm(3) density in supercritical water.

2.
J Biol Chem ; 282(32): 23129-39, 2007 Aug 10.
Artigo em Inglês | MEDLINE | ID: mdl-17545669

RESUMO

Sortases anchor surface proteins to the cell wall of Gram-positive pathogens through recognition of specific motif sequences. Loss of sortase leads to large reductions in virulence, which identifies sortase as a target for the development of antibacterials. By screening 135,625 small molecules for inhibition, we report here that aryl (beta-amino)ethyl ketones inhibit sortase enzymes from staphylococci and bacilli. Inhibition of sortases occurs through an irreversible, covalent modification of their active site cysteine. Sortases specifically activate this class of molecules via beta-elimination, generating a reactive olefin intermediate that covalently modifies the cysteine thiol. Analysis of the three-dimensional structure of Bacillus anthracis sortase B with and without inhibitor provides insights into the mechanism of inhibition and reveals binding pockets that can be exploited for drug discovery.


Assuntos
Aminoaciltransferases/química , Aminoaciltransferases/metabolismo , Aminoaciltransferases/fisiologia , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/fisiologia , Cisteína Endopeptidases/química , Cisteína Endopeptidases/metabolismo , Cisteína Endopeptidases/fisiologia , Alcenos/química , Bacillus anthracis/enzimologia , Sítios de Ligação , Cisteína/química , Ditiotreitol/farmacologia , Desenho de Fármacos , Ativação Enzimática , Inibidores Enzimáticos/química , Concentração Inibidora 50 , Cetonas , Cinética , Modelos Biológicos , Conformação Proteica
3.
J Phys Chem A ; 111(10): 1869-78, 2007 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-17311365

RESUMO

The rate constants for the reactions of phenol with the hydroxyl radical (OH*) in water have been measured from room temperature to 380 degrees C using electron pulse radiolysis and transient absorption spectroscopy. The reaction scheme designed to fit the data shows the importance of an equilibrium, giving back reactants (OH* radical and phenol) from the dihydroxycyclohexadienyl radical formed by their reaction, and the non-negligible contribution of the hydroxycyclohexadienyl radical absorption from H* atom addition. The accuracy of the reaction scheme and the reaction rate constants determined from it have been determined by the analysis of two different experiments, one under pure N2O atmosphere and the second under a mixture a N2O and O2. We report reaction rates for the H* and OH* radical addition to phenol, the formation of phenoxyl, the second-order recombination, the reaction of dihydroxycyclohexadienyl with O2, and the decay of the peroxyl adduct. Nearly all of the reaction rates deviate strongly from Arrhenius behavior.

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