Slow solvation dynamics beyond dielectric relaxation by three-pulse photon echo peak shift.

The dynamics of a liquid and its coupling to a solute are crucial for a better understanding of chemical processes in the liquid phase. In isotropic and homogeneous solutions, the time-correlation function of a solute is expected to vanish over time due to the translational and diffusive motions of the solvent. The three-pulse photon echo peak shift (3PEPS) is a third-order nonlinear spectroscopy technique that records the time-correlation function of a solute molecule in a solution, including an offset (inhomogeneity). In this work, we utilized a diffractive optics-based 3PEPS apparatus to fully resolve the dynamics in liquids from femtoseconds to nanoseconds while varying the temperature in the range of 80-298 K and the probe solute molecules. Our observations reveal dynamics slower than the dielectric relaxation of n-alcohols, even at room temperature, consisting of a ∼0.5 ns time constant that persists below the melting points and a static component (offset) on a nanosecond timescale. Based on the experiments, we suggest that locally formed glass-like clusters in liquids can be responsible for the slow dynamics. Our results may provide new insights into the dynamics of liquids and related phenomena such as liquid-glass and liquid-liquid phase transitions.

Stratum-Confined Solid-State Reaction (SC-SSR) toward Colloidal Silicon-Based Hollow Nanostructures for Bioapplications.

Silicon nanostructures (SiNSs) can provide multifaceted bioapplications; but preserving their subhundred nm size during high-temperature silica-to-silicon conversion is the major bottleneck. The SC-SSR utilizes an interior metal-silicide stratum space at a predetermined radial distance inside silica nanosphere to guide the magnesiothermic reduction reaction (MTR)-mediated synthesis of hollow and porous SiNSs. In depth mechanistic study explores solid-to-hollow transformation encompassing predefined radial boundary through the participation of metal-silicide species directing the in-situ formed Si-phase accumulation within the narrow stratum. Evolving thin-porous Si-shell remains well protected by the in-situ segregated MgO emerging as a protective cast against the heat-induced deformation and interparticle sintering. Retrieved hydrophilic SiNSs (<100 nm) can be conveniently processed in different biomedia as colloidal solutions and endocytosized inside cells as photoluminescence (PL)-based bioimaging probes. Inside the cell, rattle-like SiNSs encapsulated with Pd nanocrystals can function as biorthogonal nanoreactors to catalyze intracellular synthesis of probe molecules through C-C cross coupling reaction.

Excited State Intramolecular Proton Transfer Dynamics of Derivatives of the Green Fluorescent Protein Chromophore.

Excited state intramolecular proton transfer (ESIPT) dynamics of the o-hydroxy analogs of the green fluorescent protein (GFP) chromophore have been investigated by time-resolved spectroscopies and theoretical calculations. These molecules comprise an excellent system to investigate the effect of electronic properties on the energetics and dynamics of ESIPT and to realize applications in photonics. Time-resolved fluorescence with high enough resolution was employed to record the dynamics and the nuclear wave packets in the excited product state exclusively in conjunction with quantum chemical methods. The ESIPT are ultrafast occurring in 30 fs for the compounds employed in this work. Although the ESIPT rates are not affected by the electronic properties of the substituents suggesting barrierless reaction, the energetics, their structures, subsequent dynamics following ESIPT, and possibly the product species are distinct. The results attest that fine tuning of the electronic properties of the compounds may modify the molecular dynamics of ESIPT and subsequent structural relaxation to achieve brighter emitters with broad tuning capabilities.

Steering the multiexciton generation in slip-stacked perylene dye array via exciton coupling.

Dye arrays from dimers up to larger oligomers constitute the functional units of natural light harvesting systems as well as organic photonic and photovoltaic materials. Whilst in the past decades many photophysical studies were devoted to molecular dimers for deriving structure-property relationship to unravel the design principles for ideal optoelectronic materials, they fail to accomplish the subsequent processes of charge carrier generation or the detachment of two triplet species in singlet fission (SF). Here, we present a slip-stacked perylene bisimide trimer, which constitutes a bridge between hitherto studied dimer and solid-state materials, to investigate SF mechanisms. This work showcases multiple pathways towards the multiexciton state through direct or excimer-mediated mechanisms by depending upon interchromophoric interaction. These results suggest the comprehensive role of the exciton coupling, exciton delocalization, and excimer state to facilitate the SF process. In this regard, our observations expand the fundamental understanding the structure-property relationship in dye arrays.

Coherent Vibrational Spectrum via Time-Resolved Fluorescence for Molecular Dynamics and Identification of Emitting Species-Application to Excited-State Intramolecular Proton Transfer.

Time-resolved fluorescence (TF) with high-enough resolution enables recording of a coherent vibrational spectrum (CVS). Because a CVS attained via TF (CVSF) is descended from the frequency modulation of the fluorescence spectrum, it gives the vibrational spectrum of the emitting state. Therefore, CVSF can be a powerful tool for the identification of an emitting state along with the investigation of molecular dynamics in excited states. Herein, we report CVSF of a Schiff base salicylaldehyde azine (SAA) that has two possible excited-state intramolecular proton transfer (ESIPT) sites. The ESIPT time of SAA in dichloromethane is determined to be 22 fs. Quantitative agreement between the experimental CVSF and calculated CVSF of the mono-keto isomer demonstrates that ESIPT indeed occurs in SAA only on one side. More importantly, we show that a CVSF can be utilized to identify an emitting species and its state with the help of quantum chemical calculations. Implications of the CVSF obtained by assuming impulsive excitation of vibrations are discussed in terms of the molecular mechanism of ESIPT and the generation of nuclear wave packets in the product state.

A Plausible Mechanism of Uracil Photohydration Involves an Unusual Intermediate.

It is well-known that photolysis of pyrimidine nucleobases, such as uracil, in an aqueous environment results in the formation of hydrate as one of the main products. Although several hypotheses regarding photohydration have been proposed in the past, e.g., the zwitterionic and "hot" ground-state mechanisms, its detailed mechanism remains elusive. Here, theoretical nonadiabatic simulations of the uracil photodynamics reveal the formation of a highly energetic but kinetically stable intermediate that features a half-chair puckered pyrimidine ring and a strongly twisted intracyclic double bond. The existence and the kinetic stability of the intermediate are confirmed by a variety of computational chemistry methods. According to the simulations, the unusual intermediate is mainly formed almost immediately (∼50-200 fs) upon photoabsorption and survives long enough to engage in a hydration reaction with a neighboring water. A plausible mechanism of uracil photohydration is proposed on the basis of the modeling of nucleophilic insertion of water into the twisted double bond of the intermediate.

Temperature-Dependent Fluorescence of mPlum Fluorescent Protein from 295 to 20 K.

The development of bright fluorescent proteins (FPs) emitting beyond 600 nm continues to be of interest both from a fundamental perspective in understanding protein-chromophore interactions and from a practical perspective as these FPs would be valuable for cellular imaging. We previously reported ultrafast spectral observations of the excited-state dynamics in mPlum resulting from interconversion between direct hydrogen bonding and water-mediated hydrogen bonding between the chromophore acylimine carbonyl and the Glu16 side chain. Here, we report temperature-dependent steady-state and time-resolved fluorescence measurements of mPlum and its E16H variant, which does not contain a side-chain permitting hydrogen bonding with the acylimine carbonyl. Lowering the temperature of the system freezes interconversion between the hydrogen-bonding states, thus revealing the spectral signatures of the two states. Analysis of the temperature-dependent spectra assuming Boltzmann populations of the two states yields a 205 cm-1 energy difference. This value agrees with the predictions from a quantum mechanics/molecular mechanics study of mPlum (198 cm-1). This study demonstrates the first use of cryogenic spectroscopy to quantify the energetics and timescales of FP chromophore structural states that were only previously obtained from computational methods and further confirms the importance of acylimine hydrogen-bonding dynamics to the fluorescence spectral shifts of red FPs.

Coherent internal conversion from high lying electronic states to S1 in boron-dipyrromethene derivatives.

Internal conversion is the first step after photoexcitation to high lying electronic states, and plays a central role in many photoinduced processes. In this report, we demonstrate a truly ultrafast internal conversion (IC) in large molecules by time-resolved fluorescence (TF). Following photoexcitation to the Sn (n ≥ 2) state, TF of the S1 state was recorded for two boron-dipyrromethene (BODIPY) derivatives in solution. IC to S1 takes place nearly instantaneously within 20 fs for both molecules. Abundant nuclear wave packet motions in the S1 state are manifest in the TF signals, which demonstrates that the IC in these BODIPY molecules is coherent with respect to most of the vibrational modes. Theoretical calculations assuming impulsive IC to S1 account for the wave packet dynamics accurately.

Bismuth organic frameworks exhibiting enhanced phosphorescence.

Bismuth-based organic frameworks (BiOFs) can display interesting phosphorescent properties, but the relationship between structure and optical activity remains underexplored. The structure-dependent phosphorescence properties in the BiOFs are investigated using different multidentate ligands. In-depth analysis of the luminescence properties confirms that the densely packed framework shows long-lasting phosphorescence at room temperature, owing to an efficient electron-hole separation. The combination of spectroscopic analysis and single-crystal structural analysis provides important insights into the emission control through BiOFs structural change, which can be a useful strategy for modulating the optical properties of various metal organic frameworks. Furthermore, taking the advantage of long-lasting phosphorescence, the potential usage as an eco-friendly photocatalyst is demonstrated.

Role of coherent nuclear motion in the ultrafast intersystem crossing of ruthenium complexes.

Ultrafast intersystem crossing (ISC) in transition metal complexes leads to a long-lived active state with a high yield, which leads to efficient light energy conversion. The detailed mechanism of ISC may lead to a rational molecular design of superior transition metal complexes. Coherent nuclear wave packets observed in femtosecond time-resolved spectroscopies provide important information on the excited-state dynamics. In particular, analyzing the nuclear wave packets in both the reactant and the product may unveil the molecular dynamics of an ultrafast reaction. In this study, experimental evidence proving the reaction coordinates of the ultrafast ISC of ruthenium(ii) complexes is presented using coherent vibrational spectroscopy with a quantum chemical simulation of coherent vibrational motion. We observed vibrational modes strongly coupled to the ISC, whose vibrational coherences undergo remarkable attenuation after the ISC. The coupled modes contain metal-ligand stretching or symmetry breaking components, and the faster ISC rates of lower-symmetry ruthenium(ii) complexes support the significance of the latter.

Mapping the emergence of molecular vibrations mediating bond formation.

Fundamental studies of chemical reactions often consider the molecular dynamics along a reaction coordinate using a calculated or suggested potential energy surface1-5. But fully mapping such dynamics experimentally, by following all nuclear motions in a time-resolved manner-that is, the motions of wavepackets-is challenging and has not yet been realized even for the simple stereotypical bimolecular reaction6-8: A-B + C â†’ A + B-C. Here we track the trajectories of these vibrational wavepackets during photoinduced bond formation of the gold trimer complex [Au(CN)2-]3 in an aqueous monomer solution, using femtosecond X-ray liquidography9-12 with X-ray free-electron lasers13,14. In the complex, which forms when three monomers A, B and C cluster together through non-covalent interactions15,16, the distance between A and B is shorter than that between B and C. Tracking the wavepacket in three-dimensional nuclear coordinates reveals that within the first 60 femtoseconds after photoexcitation, a covalent bond forms between A and B to give A-B + C. The second covalent bond, between B and C, subsequently forms within 360 femtoseconds to give a linear and covalently bonded trimer complex A-B-C. The trimer exhibits harmonic vibrations that we map and unambiguously assign to specific normal modes using only the experimental data. In principle, more intense X-rays could visualize the motion not only of highly scattering atoms such as gold but also of lighter atoms such as carbon and nitrogen, which will open the door to the direct tracking of the atomic motions involved in many chemical reactions.

Non-Born-Oppenheimer Molecular Dynamics Observed by Coherent Nuclear Wave Packets.

The reaction dynamics of a photochemical reaction is typically described by reaction coordinates based on the Born-Oppenheimer (BO) approximation. A strong interaction between electrons and nuclei, conventionally occurring at conical intersections, however, breaks the BO approximation and has major consequences for the efficiency of a photochemical reaction. Despite its importance, related studies into the non-BO dynamics are scarce. Here, we investigate the non-BO dynamics of excited-state intramolecular proton transfer (ESIPT) occurring in 10-hydroxybenzo[h]quinoline (HBQ). Two coherent vibrational modes at 237 and 794 cm-1 representing molecular dynamics on a diabatic surface in HBQ are identified by a wave packet analysis based on a transient absorption measurement with a time resolution of 11 fs and with a density functional theory-based model calculation. It is also revealed that the strong Coulomb field effect in HBQ leads to the completion of ESIPT within about two cycles of the OH stretching mode. The work paves the way for time-domain studies of molecular dynamics beyond the BO approximation in other photochemical reactions.

A solvent-solute cooperative mechanism for symmetry-breaking charge transfer.

Symmetry-breaking charge transfer (SBCT) is an important process at the early stages of the photoinduced processes in multichromophore systems such as the photosynthetic apparatus. We investigated the photoinduced SBCT dynamics of 9,9'-bianthracene (BA), a representative molecule showing SBCT, by time-resolved fluorescence (TF) with the highest time-resolution and excited-state quantum mechanics/effective fragment potential molecular dynamics (MD) simulation. TF experiments show that the SBCT kinetics matches quantitatively with the solvation function excluding the initial ultrafast component that is assigned to the inertial motion of the solvent. Therefore, it is established that the SBCT of BA is coupled solely with the rotational diffusion of solvent molecules excluding the inertial motion of solvents. MD simulations show that random rotational fluctuation of solvents mostly in the first solvation shell generates a transient electric field as high as 1.0 × 109 V m-1, which provides an asymmetric environment required for the generation of a CT state in this symmetric dimer. Once the CT state is formed, the dipole moment in the solute causes further rotation of solvent molecules leading to an augmented electric field, which in turn further stabilizes the CT state prohibiting the reverse reaction.

Visualizing biofilm by targeting eDNA with long wavelength probe CDr15.

Detection of the biofilm of bacteria would be a counter strategy to detect hidden bacteria in their camouflage. Through unbiased screening of bacteria biofilm, we discovered a long wavelength probe CDr15 with extracellular DNA as the molecular target. CDr15 revealed a real-time geometric distribution of eDNA in a 3D bacterial colony.

Electronic and Structural Dynamics of Dicyanoaurate Trimer in Excited State.

A trimer of dicyanoaurate has been studied as a model system of the covalent chemical bond formation. Here, we report the dynamics of dicyanoaurate trimer in water upon photoexcitation by femtosecond time-resolved luminescence (TL) and luminescence spectra at cyrogenic temperature. Temperature was varied as a means to control the medium flexibility as well as the population of isomers. A unique parallelism between the luminescence spectrum vs. time and vs. temperature was observed, which enables unambiguous luminescence band assignments and facilitates investigation of the dynamics. Upon photoexcitation to S1, intersystem crossing proceeds in an ultrafast manner within 20 fs due to the large spin-orbit coupling followed by a structural change from a loose bent to a tight linear form in 1.5 ps. Higher oligomerization occurs above the melting temperature. TL reveals a strong coherent excitation of the symmetric Au-Au stretching vibration at 74 cm-1 through the non-Condon effect.

Molecular Dynamics of Excited State Intramolecular Charge Transfer in Solution by Coherent Nuclear Wave Packets.

Revealing a proper reaction coordinate in a chemical reaction is the key step towards elucidation of the molecular reaction dynamics. In this report, we investigated the dynamics of intramolecular charge transfer (ICT) of 8-aminopyrene-1,3,6-trisulfonic acid (APTS) occurring in the excited state by time-resolved fluorescence (TF) and TF spectra. Accurate reaction rates and rate-dependent nuclear wave packets in the product state allow detailed investigation of the molecular reaction dynamics. The ICT rate is solvent dependent: (34 fs)-1 , (87 fs)-1 , and (∞)-1 in water, formamide, and dimethylformamide, respectively. By recording spectra of the nuclear wave packets for different reaction rates, chemical species responsible for the emission spectra can be positively identified. The origin of the wave packets can be deduced from the amplitude change of the wave packets at different reaction rates, and the vibrational modes that are associated with the reaction coordinate could be identified. Theoretical calculations of the vibrational reorganization energies reproduce the experimental spectrum of the nuclear wave packets and corroborate the conclusions.

Ultrafast time-resolved fluorescence at cryogenic temperature.

Time resolved fluorescence at low temperature can be a powerful tool for the study of dynamics and spectroscopy. We have developed a time resolved fluorescence apparatus that provides a time resolution of 45 fs at cryogenic temperature, which is comparable to the best time resolution at ambient temperature. A continuous flow cryostat with a customized vacuum shroud and fluorescence upconversion gating by sum frequency generation were employed. A reflective Cassegrain type microscope objective lens was used to collect and to image the fluorescence to achieve high time resolution. It was demonstrated that time-resolved fluorescence spectra can also be measured directly without the spectra reconstruction at the same time resolution by in situ adjustment of the time delay to compensate the group velocity dispersion. Heat dissipation of the sample holder and the actual temperature of the irradiated volume were estimated by measuring the steady-state emission spectra of prodan solution in two different sample thicknesses, which provides a design consideration for the sample cell. The time-resolved fluorescence spectra of prodan, which undergoes charge transfer in the excited state, were measured at low temperature to demonstrate the capability of the apparatus.

Excited-State Dynamics of Thioflavin T: Planar Stable Intermediate Revealed by Nuclear Wave Packet Spectroscopies.

Time-domain spectroscopies with time resolution shorter than the vibrational periods of interest were employed to reveal the reaction kinetics and molecular dynamics of the intramolecular charge transfer (ICT) reaction of thioflavin T in liquids. Time-resolved fluorescence spectra provided detailed reaction kinetics, and vibrational wave packets observed in the time-resolved fluorescence and transient absorption provided structural information on the reaction intermediate. Upon photoexcitation, the Franck-Condon state undergoes vibrational relaxation and minor conformational change to form a stable planar intermediate followed by the twisting of the central C-C single bond to form the twisted ICT state. The ICT reaction rate is determined by the solvent fluctuation excluding the inertial component in the solvation function.

Femtosecond-Resolved Excited State Relaxation Dynamics of Copper (II) Tetraphenylporphyrin (CuTPP) After Soret Band Excitation.

Excited state relaxation dynamics of Copper (II) tetraphenylporphyrin (CuTPP) after Soret band excitation have been investigated in various solvents by femtosecond broadband transient absorption spectroscopy. Significant role of charge transfer state has been confirmed from fast relaxation of triplet CuTPP in pyridine, giving τ ~ 26.5 ps. In piperidine, the transient measured at 480 nm shows biexponential behavior with distinct time constants of 300 fs and 27.4 ps. The fast component with τ ~ 300 fs is attributed to relaxation of the CuTPP-piperidine adduct populated in the ground state, giving the intrinsic relaxation rate of the CuTPP exciplex for the first time. For CuTPP in O-coordinating solvents of 1,4-dioxane and tetrahydrofuran (THF), a completely new relaxation channel via the 2[dz2, dx2-y2] state is opened. As the exciplex formation is diffusion controlled, triplet CuTPP lifetimes in pure solvents employed here are all measured to be more or less same to give ~30 ps, whereas the 2[dz2, dx2-y2] exciplex formed by the ligation with O-coordinating solvents is found to relax much slowly to the ground state, giving lifetimes of ~360 and ~270 ps in 1,4-dioxane and THF, respectively.