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1.
J Phys Chem Lett ; 7(17): 3434-9, 2016 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-27530545

RESUMO

Measuring and understanding electric fields in multilayered materials at the nanoscale remains a challenging problem impeding the development of novel devices. At this scale, it is far from obvious that materials can be accurately described by their intrinsic bulk properties, and considerations of the interfaces between layered materials become unavoidable for a complete description of the system's electronic properties. Here, a general approach to the direct measurement of nanoscale internal fields is proposed. Small spot X-ray photoemission was performed on a biased graphene/SiO2/Si structure in order to experimentally determine the potential profile across the system, including discontinuities at the interfaces. Core levels provide a measure of the local potential and are used to reconstruct the potential profile as a function of the depth through the stack. It is found that each interface plays a critical role in establishing the potential across the dielectric, and the origin of the potential discontinuities at each interface is discussed.

2.
J Comput Aided Mol Des ; 29(4): 315-25, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25726024

RESUMO

The binding energy distribution analysis method (BEDAM) protocol has been employed as part of the SAMPL4 blind challenge to predict the binding free energies of a set of octa-acid host-guest complexes. The resulting predictions were consistently judged as some of the most accurate predictions in this category of the SAMPL4 challenge in terms of quantitative accuracy and statistical correlation relative to the experimental values, which were not known at the time the predictions were made. The work has been conducted as part of a hands-on graduate class laboratory session. Collectively the students, aided by automated setup and analysis tools, performed the bulk of the calculations and the numerical and structural analysis. The success of the experiment confirms the reliability of the BEDAM methodology and it shows that physics-based atomistic binding free energy estimation models, when properly streamlined and automated, can be successfully employed by non-specialists.


Assuntos
Descoberta de Drogas , Inibidores de Integrase de HIV/química , Inibidores de Integrase de HIV/farmacologia , Software , Termodinâmica , Sítios de Ligação , Descoberta de Drogas/métodos , HIV/enzimologia , Infecções por HIV/tratamento farmacológico , Integrase de HIV/metabolismo , Humanos , Modelos Moleculares
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