The complete mitochondrial genome of Potomida acarnanica (Kobelt, 1879).

Freshwater mussels (Bivalvia, Unionida) play essential roles in the well-functioning of ecosystems, even providing essential services to humans. However, these bivalves face numerous threats (e.g. habitat loss and fragmentation, pollution, introduction of invasive species, and climate change) which have already led to the extinction of many populations. This underscores the need to fully characterize the biology of these species, particularly those, such as Potomida acarnanica, that are still poorly studied. This study presents the first mitogenome of P. acarnanica (Kobelt, 1879), an endemic species of Greece with a distribution limited to only two river basins. The mitochondrial genome of a P. acarnanica specimen, collected at Pamisos River (Peloponnese, Greece), was sequenced by Illumina high-throughput sequencing. This mitogenome (16,101 bp) is characterized by 13 protein-coding genes, 22 transfer RNA and 2 ribosomal RNA genes. The size of this mitogenome is within the range of another Potomida mitogenome already published for the species Potomida littoralis. In the phylogenetic inference, P. acarnanica was recovered as monophyletic with P. littoralis mitogenome in the Lamprotulini tribe, as expected. This genomic resource will assist in genetically characterizing the species, potentially benefiting future evolutionary studies and conservation efforts.

Stressors affecting the ecological status of temporary rivers in the Mediterranean region.

Temporary rivers are widespread in the Mediterranean region and impose a challenge for the implementation of the Water Framework Directive (WFD) and other environmental regulations. Surprisingly, an overarching analysis of their ecological status and the stressors affecting them is yet missing. We compiled data on the ecological status of 1504 temporary rivers in seven European Mediterranean region countries and related their ecological status (1) to publicly available data on pressures from the European WISE-WFD dataset, and (2) to seven more specific stressors modelled on a sub-catchment scale. More than 50 % of the temporary water bodies in the Mediterranean countries reached good or even high ecological status. In general, status classes derived from phytobenthos and macrophyte assessment were higher than those derived from the assessment of benthic invertebrates or fish. Of the more generally defined pressures reported to the WISE-WFD database, the most relevant for temporary rivers were 'diffuse agricultural' and 'point urban waste water'. Of the modelled more specific stressors, agricultural land use best explained overall ecological status, followed by total nitrogen load, and urban land use, while toxic substances, total phosphorus load and hydrological stressors were less relevant. However, stressors differed in relevance, with total nitrogen being most important for macrophytes, and agricultural land use for phytobenthos, benthic invertebrates and fish. For macrophytes, ecological quality increased with stressor intensity. The results underline the overarching effect of land use intensity for the ecological status of temporary water bodies. However, assessment results do not sufficiently reflect hydrological stress, most likely as the biological indicators used to evaluate these systems were designed for perennial water bodies and thus mainly target land use and nutrient impacts. We conclude that biomonitoring systems need to be updated or newly developed to better account for the specific situation of temporary water bodies.

Uncovering the Grinnellian niche space of the cryptic species complex Gammarus roeselii.

Background: The discovery of cryptic species complexes within morphologically established species comes with challenges in the classification and handling of these species. We hardly know to what extent species within a species complex differ ecologically. Such knowledge is essential to assess the vulnerability of individual genetic lineages in the face of global change. The abiotic conditions, i.e., the Grinnellian niche that a genetic lineage colonizes, provides insights into how diverse the ecological requirements of each evolutionary lineage are within a species complex. Material and Methods: We sampled the cryptic species complex of the amphipod Gammarus roeselii from Central Germany to Greece and identified genetic lineages based on cytochrome c oxidase subunit I (COI) barcoding. At the same time, we recorded various abiotic parameters and local pollution parameters using a series of in vitro assays to then characterize the Grinnellian niches of the morphospecies (i.e., Gammarus roeselii sensu lato) as well as each genetic lineage. Local pollution can be a significant factor explaining current and future distributions in times of increasing production and release of chemicals into surface waters. Results: We identified five spatially structured genetic lineages in our dataset that differed to varying degrees in their Grinnellian niche. In some cases, the niches were very similar despite the geographical separation of lineages, supporting the hypothesis of niche conservatism while being allopatrically separated. In other cases, we found a small niche that was clearly different from those of other genetic lineages. Conclusion: The variable niches and overlaps of different dimensions make the G. roeselii species complex a promising model system to further study ecological, phenotypic and functional differentiation within this species complex. In general, our results show that the Grinnellian niches of genetically distinct molecular operational taxonomic units (MOTUs) within a cryptic species complex can differ significantly between each other, calling for closer inspection of cryptic species in a conservational and biodiversity context.

European river typologies fail to capture diatom, fish, and macrophyte community composition.

Typology systems are frequently used in applied and fundamental ecology and are relevant for environmental monitoring and conservation. They aggregate ecosystems into discrete types based on biotic and abiotic variables, assuming that ecosystems of the same type are more alike than ecosystems of different types with regard to a specific property of interest. We evaluated whether this assumption is met by the Broad River Types (BRT), a recently proposed European river typology system, that classifies river segments based on abiotic variables, when it is used to group biological communities. We compiled data on the community composition of diatoms, fishes, and aquatic macrophytes throughout Europe and evaluated whether the composition is more similar in site groups with the same river type than in site groups of different river types using analysis of similarities, classification strength, typical species analysis, and the area under zeta diversity decline curves. We compared the performance of the BRT with those of four region-based typology systems, namely, Illies Freshwater Ecoregions, the Biogeographic Regions, the Freshwater Ecoregions of the World, and the Environmental Zones, as well as spatial autocorrelation (SA) classifications. All typology systems received low scores from most evaluation methods, relative to predefined thresholds and the SA classifications. The BRT often scored lowest of all typology systems. Within each typology system, community composition overlapped considerably between site groups defined by the types of the systems. The overlap tended to be the lowest for fishes and between Illies Freshwater Ecoregions. In conclusion, we found that existing broad-scale river typology systems fail to delineate site groups with distinct and compositionally homogeneous communities of diatoms, fishes, and macrophytes. A way to improve the fit between typology systems and biological communities might be to combine segment-based and region-based typology systems to simultaneously account for local environmental variation and historical distribution patterns, thus potentially improving the utility of broad-scale typology systems for freshwater biota.

REVIVE: A feasibility assessment tool for freshwater fish conservation translocations in Mediterranean rivers.

Conservation translocation is a management action applied for population recovery of threatened freshwater fishes, often however with partially successful outcome, mainly due to inadequate feasibility assessment prior to the translocation. Up to date, feasibility assessments have been mainly focused on economically important species (e.g., salmonids) inhabiting perennial rivers, while little attention has been given to fish translocations in rivers in Mediterranean climate areas. In this study, we developed a robust feasibility assessment tool for freshwater fish translocations in Mediterranean-type riverine ecosystems within an interdisciplinary, multispecies approach. The REVIVE tool integrates quantitative and semi-quantitative data, incorporates uncertainty and consists of two main components. The first component is the evaluation of the potential release water bodies (R-WBs) for their suitability for the planned translocation, incorporating a number of essential criteria for Mediterranean rivers, with emphasis on flow regime and habitat quantity. Additional criteria include the current and historical presence of the target species, water and biological quality, habitat suitability in terms of the ecological requirements of the target species, alien invasive species' pressure, and hydromorphological pressures, including their mitigation potential. The second component is the evaluation of the potential source water bodies (S-WBs) in terms of genetic compatibility and provision of a sufficient number of propagules. A trial application in a Mediterranean basin (Vassilopotamos River, Southern Greece) for the potential translocation of two threatened cyprinids in five R-WBs indicated the robustness of the tool. This integrative, flexible tool combines several elements identified as essential in reintroduction biology and can have wider applications, for a multitude of freshwater fish taxa and riverine systems, maximizing the success of planned translocation actions by natural resources' managers. Modifications to enable its transferability to other river types or fish taxa are also discussed.

The Rhyacophila fasciata Group in Europe: Rhyacophila macedonica Karaouzas, Valladolid amp; Ibrahimi (n. sp.) from Greece, Kosovo, Republic of North Macedonia and Serbia (Trichoptera: Rhyacophilidae).

The morphology of all postembryonic stages (larva, pupa, male, and female) of Rhyacophila macedonica Karaouzas, Valladolid, Ibrahimi n. sp. from Greece, Republic of North Macedonia, Kosovo and Serbia was examined. Morphological data were supplemented by a molecular analysis of the mitochondrial cytochrome C oxidase subunit I (COI) and compared with samples of the nominate species Rhyacophila fasciata Hagen 1859, as well as with other species and subspecies in this group: Rhyacophila septentrionis McLachlan 1865, Rhyacophila denticulata McLachlan 1879, Rhyacophila sociata Navs 1916, Rhyacophila kykladica Malicky Sipahiler 1993, Rhyacophila fasciata delici Kucinic Valladolid 2020, and Rhyacophila fasciata viteceki Valladolid Kucinic 2020. Our results revealed morphological differences between the nominate species and R. macedonica, as well as genetic differences among the taxa in the Rhyacophila fasciata Group, so we propose R. macedonica as a new species of the Group. Based on the new molecular data, we also elevate R. f. delici to the status of a distinct species, R. delici (status promotus).

Larval description of Limnephilus barbagaensis Malicky, Sekhi amp; Lounaci 2019 (Trichoptera: Limnephilidae), a micro-endemic of Algeria, with notes on its ecology.

The hitherto unknown larva of Limnephilus barbagaensis Malicky, Sekhi Lounaci 2019, micro-endemic of the Aures Mountains (Mounts des Aures, Algeria), is described. The diagnostic features of the species are listed, illustrated, compared with those of similar species, and some information on the ecology is included. In addition, the first record of Hydropsyche siltalai Dhler 1963 in the Aures Region and Northeast Algeria is also reported.

Trace element contamination status of surface marine sediments of Greece: an assessment based on two decades (2001-2021) of data.

This study is a first attempt to assess the trace element contamination status in the surface sediments of the Hellenic Seas since the first environmental studies in the country commenced in the mid-1970s. All available trace element data from the last 20 years have been collected and assessed using sediment quality guidelines and application of single- and multielement pollution indices. Although Hellenic marine sediments initially appear as anthropogenically enriched in Cr and As, this enrichment is attributed to the natural background. Central Greece appears more polluted, followed by Northern Greece and lastly Southern Greece. The element pollution indices featured the influence of industrial activities such as mining, steel industry and chemical factories, shipyards, and secondarily the influence of port activities.

Biotic indices of hydrological variability as tools to inform dynamic ecological status assessments in river ecosystems.

River biomonitoring uses biotic indices that assess human-induced degradation, including pollution, by comparison with type-specific static biological reference conditions. However, index scores that indicate pollution may reflect biological responses to natural hydrological variability associated with low flows and drying, leading biomonitoring schemes to misclassify sites as degraded. To address this, dynamic, site-specific adjustments of static biological reference conditions have been proposed, but current biomonitoring tools cannot facilitate implementation of these adjustments. We analyzed 329 samples from mediterranean-climate rivers in Greece, to evaluate the use of six stressor-specific macroinvertebrate-based indices of hydrological variability (CEFI, DEHLI, ELF, LIFE, LIFENZ, MIS-index) as tools to facilitate dynamic adjustments of static biological reference conditions. We examined macroinvertebrate assemblage responses to physicochemical and land use drivers in relation to each sample's hydrological conditions, as assessed by the six indices. We evaluated index performance beyond the region of development by exploring correlations among indices, including correlations with the region-specific Greek ELF index, for which 100% of taxa were represented. We also examined the influence of inorganic nutrient pollution on index performance by comparing index scores from samples with and without nutrient pollution. Season, water temperature, agricultural land use and nutrient pollution were major drivers of macroinvertebrate assemblage composition. Indices were positively correlated but correlation strength varied considerably, driven primarily by taxonomic representation (the proportion of sampled taxa included in each index's calculation), and potentially also by differences in river types, taxonomic resolution and sampling strategies. All indices identified site-specific hydrological conditions both in the presence and absence of nutrient pollution. We recommend the development of region-specific biotic indices of hydrological variability, or regional adaptation of existing indices, to represent 100% of the regional taxa pool and thus to enable acceptable performance beyond their region of development. Such indices could inform dynamic adaptation of static biological reference conditions by assessing site-specific hydrological conditions based on a macroinvertebrate assemblage, without the collection of additional, abiotic field data. Application of our proposed approach could prevent misclassification of ecological status, thus avoiding time-demanding and costly mismanagement of rivers and streams.

The Rhyacophila fasciata Group in Europe: Rhyacophila fasciata Hagen 1859 and formerly synonymized species (Trichoptera: Rhyacophilidae), with new description of Rhyacophila fasciata and Rhyacophila septentrionis McLachlan 1865 (stat. prom.).

The presence and distribution of Rhyacophila fasciata Hagen 1859 in Europe were revised, based on bibliographic study, collection specimens, and new material collected in different countries. The status of formerly synonymized species, Rhyacophila ferruginea (Scopoli 1763) and Rhyacophila septentrionis McLachlan 1865 was also assessed. The type of R. ferruginea is missing, the taxon is still unidentified, and thus we propose Rhyacophila ferruginea as a nomen dubium. Morphological features and genetic evidence revealed that R. septentrionis differs from R. fasciata, so we propose to change its status to status resurrectus. We therefore include new descriptions of the different stages (larva, pupa, male, and female) of R. fasciata and of R. septentrionis, together with a molecular analysis based on mitochondrial cytochrome oxidase I (mtCOI) and ecological notes. The species R. coppai Oláh 2020 NEW SYNONYM and R. soreda Coppa Oláh 2020 NEW SYNONYM are synonyms of R. sociata Navás 1916; the species R. kopasa Oláh Coppa 2020 NEW SYNONYM and R. rova Oláh Coppa 2020 NEW SYNONYM are synonyms of R. denticulata McLachlan 1879; the species R. matrensis Oláh Szczesny 2020 is probably a synonym of R. fasciata, so more study of this species is needed in order to confirm or deny that it is a valid species.

Heavy metal contamination status in Greek surface waters: A review with application and evaluation of pollution indices.

Heavy metal contamination of the aquatic environment is of worldwide concern, due to the toxicity of metals and their lethal effects on aquatic organisms. The investigation of heavy metal concentrations in freshwater bodies has increased over the last decades in Greece; however, most studies have been sporadic and spatially limited. An overall assessment of the heavy metal contamination status in Greek surface water bodies is lacking. In this review, all available published data from 1999 to 2019 were collected and analysed to assess the heavy metal contamination status of the surface water bodies of Greece. Data were available for 68 water bodies and several pollution indices (e.g. Heavy Metal Pollution index, Geoaccumulation index, Moderated Pollution Index) were calculated to evaluate their surface water quality. Overall, heavy metal concentrations in water samples were below the Environmental Quality Standards (EQS) and the vast majority of water bodies were classified as good quality based on surface water pollution indices. Sediment heavy metal concentrations exceeding the Sediment Quality Guidelines (SQGs) were detected in most water bodies. Rivers Axios, Evros, Louros, Gallikos, Greveniotikos, Palea Kavala, Kompsatos, Alfeios and Evrotas, and lakes Pamvotis, Doirani and Koumoundourou were either moderately or highly contaminated. Up to date, heavy metal pollution indices used worldwide for surface waters refer to potable water. Thus, pollution indices must be developed for assessing primarily the ecological consequences of heavy metal pollution and surface water pollution status. Finally, sediment pollution guidelines must be suggested at a European or regional level.

Molecular data suggest multiple origins and diversification times of freshwater gammarids on the Aegean archipelago.

Our main aim was to investigate the diversity, origin and biogeographical affiliations of freshwater gammarids inhabiting the Aegean Islands by analysing their mtDNA and nDNA polymorphism, thereby providing the first insight into the phylogeography of the Aegean freshwater gammarid fauna. The study material was collected from Samothraki, Lesbos, Skyros, Evia, Andros, Tinos and Serifos islands as well as from mainland Greece. The DNA extracted was used for amplification of two mitochondrial (COI and 16S) and two nuclear markers (28S and EF1-alpha). The multimarker time-calibrated phylogeny supports multiple origins and different diversification times for the studied taxa. Three of the sampled insular populations most probably represent new, distinct species as supported by all the delimitation methods used in our study. Our results show that the evolution of freshwater taxa is associated with the geological history of the Aegean Basin. The biogeographic affiliations of the studied insular taxa indicate its continental origin, as well as the importance of the land fragmentation and the historical land connections of the islands. Based on the findings, we highlight the importance of studying insular freshwater biota to better understand diversification mechanisms in fresh waters as well as the origin of studied Aegean freshwater taxa.

An annotated checklist of the Niphargidae (Crustacea: Amphipoda) of Greece.

Despite Greece being a global hotspot of subterranean biodiversity, its hypogean fauna is largely neglected from both an ecological and conservational point of view. An overview of the Niphargidae occurring in Greece is presented as an annotated list of all available published records. These records have resulted in an updated species list reflecting taxonomic corrections and species distribution range in the Greek peninsula. A total of 23 species, attributed to 3 genera, is up to date known from Greece with a high rate of endemicity found particularly in Crete. The endemic species of Greece amount to 21 (91% of total species richness), with the remaining species distributing also in the Republic of North Macedonia. Currently, none of them is listed in the national, European or global IUCN Red Lists of Threatened Species. Considering the increasing habitat degradation due to anthropic pressure, groundwater harvesting and climate change we could lose rare and endemic species without even acknowledging their existence.

Contribution to the knowledge of the caddisfly fauna of Algeria: An updated checklist of Algerian Trichoptera with new records from the Aures region.

The caddisfly fauna of Algeria is poorly known and the few sporadic studies available were carried out decades ago. In this study, caddisfly larvae, pupae, and adults were collected in 11 stream localities from the Aures region, northeastern Algeria. Caddisflies were regularly sampled between April 2018 and February 2020. Two genera are new records to Algeria: Plectrocnemia and Setodes. In addition, four Trichoptera species are new to the Algerian fauna: Tinodes dives, Hydropsyche modesta, Plectrocnemia conspersa and Setodes acutus. Future caddisfly surveys in the region will doubtlessly contribute significantly to the incompletely known Trichoptera fauna of Algeria.

Minimizing human error in macroinvertebrate samples analyses for ensuring quality precision in freshwater monitoring programs.

Benthic macroinvertebrates are often used in ecological quality monitoring. However, due to the large number of samples and specimens, sample processing (sorting/identification) is a labor-intensive task that is susceptible to errors. These errors can consequently lead to biased assessment results. We conducted the first audit of the Greek National Water Monitoring program. Totally, 444 samples were sorted at the laboratory by primary sorters and macroinvertebrate identification was conducted mainly at family level by primary taxonomists, having different taxonomic expertise. The Percentage Sorting Efficiency (PSE), Percentage of Taxonomic Disagreement (PTD), and the Relative Percentage Difference (RPD) were calculated to determine differences between auditing stages. Control charts were used to determine the process changes of the personnel (sorting: PSE index and identification: PTD index) as a calibration check. Additionally, national ecological indices/metrics were calculated to identify how they are affected by errors. All samples except from one had PSE values higher than 90%. The most common overlooked families were Chironomidae, followed by Baetidae and Gammaridae due to their high abundances. Average values of the PTD index for the total number of samples was 5.75% and 1.86% in each phase, respectively. The PTD values decreased between the two phases due to the gained experience of primary taxonomists during the 1st phase. The average action control limit was 95% for the PSE values and 14% for the PTD values. Overall, our ecological quality results indicated that the sorting error was less important than the identification one as the latter may lead to different ecological quality classifications. Our results show that our auditing procedure is effective and increases the quality and accuracy of the sample analysis procedure. It also highlights that human error should not be neglected since it may affect the ecological quality results and especially the good/moderate boundary which leads to rehabilitation measures.

The Rhyacophila fasciata Group in Greece: Rhyacophila kykladica Malicky amp; Sipahiler 1993 (stat. prom.) (Trichoptera: Rhyacophilidae). Morphological description, genetic and ecological features.

The morphology of the different stages (larva, pupa, male, and female) of Rhyacophila fasciata kykladica Malicky Sipahiler 1993 was examined as a basis for the description of the taxon. Morphological data were supplemented by molecular analysis of mitochondrial cytochrome C oxidase subunit I (mtCOI), which were compared with samples of the nominate subspecies Rhyacophila fasciata fasciata Hagen 1859, as well as with other new species in this group, Rhyacophila denticulata McLachlan 1879 and Rhyacophila sociata Navás 1916. Our results revealed genetic differences between all the taxa; therefore, a change of taxonomic status of R. fasciata kykladica to R. kykladica (stat. prom.) is proposed.

Effects of olive mill wastewater discharge on benthic biota in Mediterranean streams.

Olive mill wastewaters (OMW) discharging in river ecosystems cause significant adverse effects on their water chemistry and biological communities. We here examined the effects of OMW loads in four streams of a Mediterranean basin characterized by changing flow. The diatom and macroinvertebrate community structures were compared between upstream (control) and downstream (impacted) sites receiving OMW discharge. We also tested if effects occurred at the organism level, i.e. the occurrence of deformities in diatom valves, and the sediment toxicity on the midge Chironomus riparius. We evaluated these effects through a two-year analysis, at various levels of chemical pollution and dilution capacity. The impacted sites had high phenol concentrations and organic carbon loads during and after olive mill (OM) operation, and were characterized by higher abundances of pollution-tolerant diatom and macroinvertebrate taxa. Diatom valve deformities occurred more frequently at the impacted sites. The development of C. riparius was affected by phenolic compounds and organic carbon concentrations in the sediments. The similarity in the diatom and macroinvertebrate assemblages between control and impacted sites decreased at lower flows. Diatoms were more sensitive in detecting deterioration in the biological status of OMW receiving waterways than macroinvertebrates. Our results indicate that the negative effects of OMW extended to the whole benthic community, at both assemblage and organism level.