Enhanced Transcriptional Signature and Expression of Histone-Modifying Enzymes in Salivary Gland Tumors.

Salivary gland tumors (SGTs) are rare and complex neoplasms characterized by heterogenous histology and clinical behavior as well as resistance to systemic therapy. Tumor etiology is currently under elucidation and an interplay of genetic and epigenetic changes has been proposed to contribute to tumor development. In this work, we investigated epigenetic regulators and histone-modifying factors that may alter gene expression and participate in the pathogenesis of SGT neoplasms. We performed a detailed bioinformatic analysis on a publicly available RNA-seq dataset of 94 ACC tissues supplemented with clinical data and respective controls and generated a protein-protein interaction (PPI) network of chromatin and histone modification factors. A significant upregulation of TP53 and histone-modifying enzymes SUV39H1, EZH2, PRMT1, HDAC8, and KDM5B, along with the upregulation of DNA methyltransferase DNMT3A and ubiquitin ligase UHRF1 mRNA levels, as well as a downregulation of lysine acetyltransferase KAT2B levels, were detected in ACC tissues. The protein expression of p53, SUV39H1, EZH2, and HDAC8 was further validated in SGT tissues along with their functional deposition of the repressive histone marks H3K9me3 and H3K27me3, respectively. Overall, this study is the first to detect a network of interacting proteins affecting chromatin structure and histone modifications in salivary gland tumor cells, further providing mechanistic insights in the molecular profile of SGTs that confer to altered gene expression programs.

Estimating cucumber crop coefficients under different greenhouse microclimatic conditions.

This study aimed to determine cucumber crop coefficients under different greenhouse microclimatic conditions, parameterizing the Priestley-Taylor reference evapotranspiration model. Crop evapotranspiration was directly measured with the use of lysimeters, and crop coefficients were computed following the two-step climate FAO 56 methodology. Greenhouse compartments (i.e., cooled or uncooled) showed reference evapotranspiration differences of up to 12% in an autumn-winter crop. The results presented cucumber crop coefficient values from the initial to the late-season growth stages from 0.45 to 0.94 depending on the greenhouse climate. Based on the greenhouse hourly microclimatic variation of KC, it is recommended not to apply a KC as a constant for transpiration estimation even at greenhouses located within the same region Regression analysis relating crop coefficients with leaf area revealed very high correlation coefficients for the equations tested. The results indicated that evapotranspiration can be modeled satisfactory based on a significant relationship between crop coefficient and simple measurements of the leaf area index (i.e., KC = 0.447 × LAI).

Basil functional and growth responses when cultivated via different aquaponic and hydroponics systems.

Background: Aquaponics is an innovative farming system that combines hydroponics and aquaculture, resulting in the production of both crops and fish. Decoupled aquaponics is a new approach introduced in aquaponics research for the elimination of certain system bottlenecks, specifically targeting the optimization of crops and fish production conditions. The aquaponics-related literature predominantly examines the system's effects on crop productivity, largely overlooking the plant functional responses which underlie growth and yield performance. The aim of the study was the integrated evaluation of basil performance cultivated under coupled and decoupled aquaponic systems compared with a hydroponic one, in terms of growth and functional parameters in a pilot-scale aquaponics greenhouse. Methods: We focused on the efficiency of the photosynthetic process and the state of the photosynthetic machinery, assessed by instantaneous gas exchange measurements as well as photosynthetic light response curves, and in vivo chlorophyll a fluorescence. Light use efficiency was estimated through leaf reflectance determination. Photosynthetic pigments content and leaf nutritional state assessments completed the picture of basil functional responses to the three different treatments/systems. The plant's functional parameters were assessed at 15-day intervals. The experiment lasted for two months and included an intermediate and a final harvest during which several basil growth parameters were determined. Results: Coupled aquaponics resulted in reduced growth, which was mainly ascribed to sub-sufficient leaf nutrient levels, a fact that triggered a series of negative feedbacks on all aspects of their photosynthetic performance. These plants experienced a down-regulation of PSII activity as reflected in the significant decreases of quantum yield and efficiency of electron transport, along with decreased photosynthetic pigments content. On the contrary, decoupled aquaponics favored both growth and photochemistry leading to higher light use efficiency compared with coupled system and hydroponics, yet without significant differences from the latter. Photosynthetic light curves indicated constantly higher photosynthetic capacity of the decoupled aquaponics-treated basil, while also enhanced pigment concentrations were evident. Basil functional responses to the three tested production systems provided insights on the underlying mechanisms of plant performance highlighting key-points for systems optimization. We propose decoupled aquaponics as an effective system that may replace hydroponics supporting high crops productivity. We suggest that future works should focus on the mechanisms involved in crop and fish species function, the elucidation of which would greatly contribute to the optimization of the aquaponics productivity.

The role of dual-specificity phosphatase 3 in melanocytic oncogenesis.

Dual-specificity phosphatase 3 (DUSP3), also known as Vaccinia H1-related phosphatase, is a protein tyrosine phosphatase that typically performs its major role in the regulation of multiple cellular functions through the dephosphorylation of its diverse and constantly expanding range of substrates. Many of the substrates described so far as well as alterations in the expression or the activity of DUSP3 itself are associated with the development and progression of various types of neoplasms, indicating that DUSP3 may be an important player in oncogenesis and a promising therapeutic target. This review focuses exclusively on DUSP3's contribution to either benign or malignant melanocytic oncogenesis, as many of the established culprit pathways and mechanisms constitute DUSP3's regulatory targets, attempting to synthesize the current knowledge on the matter. The spectrum of the DUSP3 interactions analysed in this review covers substrates implicated in cellular growth, cell cycle, proliferation, survival, apoptosis, genomic stability/repair, adhesion and migration of tumor melanocytes. Furthermore, the speculations raised, based on the evidence to date, may be considered a fundament for potential research regarding the oncogenesis, evolution, management and therapeutics of melanocytic tumors.

Polymorphous Adenocarcinoma, Low Grade Variant, Colliding with a Neurofibroma.

Collision tumors, composed of two distinct benign or malignant neoplasms, are rarely reported in the oral cavity. We present a case of a 61-year-old female with an asymptomatic non-demarcated lump on the soft palate of unknown duration. An incisional biopsy revealed the presence of two neoplastic populations, a neurofibroma that was partially infiltrated by a polymorphous adenocarcinoma, low-grade variant. Total surgical excision was performed, with uneventful follow-up period. The development of collision tumors may be incidental, although molecular events may influence the pathogenetic mechanism of the phenomenon.

Machine Learning-Based Crop Stress Detection in Greenhouses.

Greenhouse climate control systems are usually based on greenhouse microclimate settings to exert any control. However, to save energy, water and nutrients, additional parameters related to crop performance and physiology will have to be considered. In addition, detecting crop stress before it is clearly visible by naked eye is an advantage that could aid in microclimate control. In this study, a Machine Learning (ML) model which takes into account microclimate and crop physiological data to detect different types of crop stress was developed and tested. For this purpose, a multi-sensor platform was used to record tomato plant physiological characteristics under different fertigation and air temperature conditions. The innovation of the current model lies in the integration of photosynthesis rate (Ps) values estimated by means of remote sensing using a photochemical reflectance index (PRI). Through this process, the time-series Ps data were combined with crop leaf temperature and microclimate data by means of the ML model. Two different algorithms were evaluated: Gradient Boosting (GB) and MultiLayer perceptron (MLP). Two runs with different structures took place for each algorithm. In RUN 1, there were more feature inputs than the outputs to build a model with high predictive accuracy. However, in order to simplify the process and develop a user-friendly approach, a second, different run was carried out. Thus, in RUN 2, the inputs were fewer than the outputs, and that is why the performance of the model in this case was lower than in the case of RUN 1. Particularly, MLP showed 91% and 83% accuracy in the training sample, and 89% and 82% in testing sample, for RUNs 1 and 2, respectively. GB showed 100% accuracy in the training sample for both runs, and 91% and 83% in testing sample in RUN 1 and RUN 2, respectively. To improve the accuracy of RUN 2, a larger database is required. Both models, however, could easily be incorporated into existing greenhouse climate monitoring and control systems, replacing human experience in detecting greenhouse crop stress conditions.

SDH-deficient renal cell carcinoma: A case report associated with a novel germline mutation.

The highly syndromic nature of succinate dehydrogenase-deficient RCCs constitutes their active surveillance and molecular profiling the alpha and omega.

The Expression of NRIP1 and LCOR in Endometrioid Endometrial Cancer.

BACKGROUND: The aim of the study was to analyze the expression of nuclear receptor interacting protein 1 (NRIP1) and its partner ligand-dependent nuclear receptor co-repressor (LCOR) in endometrioid endometrial cancer and to investigate their association with estrogen receptor (ER), progesterone receptor (PR), Ki-67, clinicopathological parameters and patient survival. MATERIALS AND METHODS: Immunohistochemical evaluation was carried out to investigate the subcellular expression of NRIP1 and LCOR in endometrioid endometrial cancer samples. Statistical analysis was used to identify the correlations of NRIP1 and LCOR expression with clinicopathological variables and to estimate the survival rates. RESULTS: Endometrial cancer tissues exhibited higher expression of NRIP1 and LCOR in comparison with the normal tissues. Cytoplasmic LCOR expression was positively associated with ER and PR expression, while cytoplasmic NRIP1 expression was positively associated with ER expression. Moreover, cytoplasmic expression of NRIP1 was positively associated with Ki-67. CONCLUSION: Our study demonstrated that high cytoplasmic expression of LCOR may predict a longer overall survival of patients with endometrioid endometrial cancer. Patients with tumors expressing low levels of LCOR showed a worse survival compared to those expressing high levels.

Freshwater-adapted sea bass Dicentrarchus labrax feeding frequency impact in a lettuce Lactuca sativa aquaponics system.

The aim of this study is to investigate the effect of three daily fish feeding frequencies, two, four and eight times per day (FF2, FF4, and FF8, respectively) on growth performance of sea bass (Dicentrarchus labrax)and lettuce plants (Lactuca sativa) reared in aquaponics. 171 juvenile sea bass with an average body weight of 6.80 ± 0.095 g were used, together with 24 lettuce plants with an average initial height of 11.78 ± 0.074 cm over a 45-day trial period. FF2 fish group showed a significantly lower final weight, weight gain and specific growth rate than the FF4 and FF8 groups. Voluntary feed intake was similar for all the three feeding frequencies treatmens (p > 0.05). No plant mortality was observed during the 45-day study period. All three aquaponic systems resulted in a similar leaf fresh weight and fresh and dry aerial biomass. The results of the present study showed that the FF4 or FF8 feeding frequency contributes to the more efficient utilization of nutrients for better growth of sea bass adapted to fresh water while successfully supporting plant growth to a marketable biomass.

Responses of sweet pepper (Capsicum annum L.) cultivated in a closed hydroponic system to variable calcium concentrations in the nutrient solution.

BACKGROUND: The use of water containing calcium bicarbonate (Ca(HCO3 )2 ) at excessively high concentrations in closed hydroponic crops can cause calcium ion (Ca2+ ) accumulation in the recycled nutrient solution (NS) and concomitantly negatively affect yield and product quality. The aim of the study was to determine maximum Ca2+ concentrations that do not harm the crop and to simulate the pattern of Ca2+ accumulation when the Ca2+ concentration in the irrigation water, and concomitantly in the replenishment nutrient solution (RNS), is excessive. In the current study, irrigation water containing 1.5, 3.0, 4.5 and 6.0 mmol L-1 Ca2+ was used to prepare the RNS supplied to pepper cultivated in a closed hydroponic system. RESULTS: At 1.5 mmol L-1 Ca2+ , no Ca2+ accumulation was observed in the recirculating NS. However, at 3.0, 4.5 and 6.0 mmol L-1 in the irrigation water, the Ca2+ concentration in the recirculating NS, increased by the latter cropping stages to 17, 28 and 37 mmol L-1 , corresponding to 6.4, 9.0 and 10.8 dS m-1 . The accumulation of Ca2+ in the recirculating NS affected both tissue nutrient concentrations and uptake concentrations of Ca2+ , sulphate ion (SO4 2- ) and magnesium ion (Mg2+ ), but this was not the case for nitrogen (N) or potassium ion (K+ ). Growth, yield and plant water uptake were restricted at moderate (3.0 and 4.5 mmol L-1 ) and high (6.0 mmol L-1 ) external Ca2+ levels. CONCLUSION: In soilless pepper crops with zero discharge of fertigation effluents, the Ca2+ concentration in the irrigation water and the RNS should be lower than 3.0 mmol L-1 to avoid yield restrictions due to salinity. © 2021 Society of Chemical Industry.

Richter transformation in the oral and maxillofacial area: report of 2 cases and literature review.

Richter transformation (RT) is a term used to refer to the development of an aggressive lymphoma, usually of diffuse large B-cell lymphoma type, in a patient with a history of chronic lymphocytic leukemia. It may present with heterogeneous manifestations, including the occurrence of tumors at extranodal sites. To date, only 6 cases of RT involving the oral and maxillofacial region have been reported. Here, we present 2 rare cases of lymphoma initially affecting the maxilla and the lower gingiva, respectively, of female patients with chronic lymphocytic leukemia and review the English language literature about RT manifesting in the oral and maxillofacial tissues.

Evaluation of Silica-Coated Insect Proof Nets for the Control of Aphis fabae, Sitophilus oryzae, and Tribolium confusum.

Insect proof nets are widely used in agriculture as mechanical and physical barriers to regulate pest populations in a greenhouse. However, their integration in the greenhouse ventilation openings is highly associated with the decrease of air flow and the adequate ventilation. Thus, there is need for alternative pest management tools that do not impair adequate ventilation. In the present study, we tested four net formulations of relatively large mesh size coated with SiO2 nanoparticles, namely, ED3, ED3-P, ED5, and ED5-P to evaluate their insecticidal properties against adults of Aphis fabae and Sitophilus oryzae and larvae of Tribolium confusum. ED3 and ED5 nets were coated with SiO2 nanoparticles of different diameter, while in the case of ED3-P and ED5-P, paraffin was added to increase the mass of the deposited particles on the net's surface. In the first series of bioassays, the knockdown and mortality rates of these species were evaluated after exposure to the aforementioned net formulations for 5, 10, 15, 20, 25, 30, 60, 90, and 180 min. In the second series of bioassays, knockdown and mortality of these species were recorded after 1, 7, and 10 days of post-exposure to the nets for different time intervals (15, 30, and 60 min). Based on our results, all nets significantly affected A. fabae, since all insects were dead at the 1-day post-exposure period to the silica-treated nets. Conversely, at the same interval, no effect on either S. oryzae adults or T. confusum larvae was observed. However, in the case of S. oryzae, the efficacy of all nets reached 100% 7 days after the exposure, even for adults that had been initially exposed for 15 min to the treated nets. Among the species tested, T. confusum larvae exhibited the lowest mortality rate, which did not exceed 34% at the 10 days of post-exposure interval. Our work underlines the efficacy of treated nets in pest management programs, under different application scenarios, at the pre- and post-harvest stages of agricultural commodities.

Effect of Light Intensity and Quality on Growth Rate and Composition of Chlorella vulgaris.

In this research, the effect of solar irradiance on Chlorella vulgaris cultivated in open bioreactors under greenhouse conditions was investigated, as well as of ratio of light intensity in the 420-520 nm range to light in the 580-680 nm range (I420-520/I580-680) and of artificial irradiation provided by red and white LED lamps in a closed flat plate laboratory bioreactor on the growth rate and composition. The increase in solar irradiance led to faster growth rates (µexp) of C. vulgaris under both environmental conditions studied in the greenhouse (in June up to 0.33 d-1 and in September up to 0.29 d-1) and higher lipid content in microalgal biomass (in June up to 25.6% and in September up to 24.7%). In the experiments conducted in the closed bioreactor, as the ratio I420-520/I580-680 increased, the specific growth rate and the biomass, protein and lipid productivities increased as well. Additionally, the increase in light intensity with red and white LED lamps resulted in faster growth rates (the µexp increased up to 0.36 d-1) and higher lipid content (up to 22.2%), while the protein, fiber, ash and moisture content remained relatively constant. Overall, the trend in biomass, lipid, and protein productivities as a function of light intensity was similar in the two systems (greenhouse and bioreactor).

Comparison of Growth Rate and Nutrient Content of Five Microalgae Species Cultivated in Greenhouses.

The effect of different environmental conditions on the growth rate, biomass production, nutrient composition, and phenolic content of the microalgae species Chlorella vulgaris, Botryococcus braunii, Chlamydomonas reinhardtii, Euglena gracilis, and Nannochloropsis oculata was investigated. The experiments were conducted in open bioreactors in a greenhouse in three different periods (during October, March, and June), and in a controlled environment in a closed plant growth chamber. It was found that the growth rate and production of C. vulgaris and B. braunii was higher during March, C. reinhardtii and N. oculata grew better in June, and the growth of E. gracilis was similar in March and June. The lipid content of the biomass of all five species increased with increasing light intensity and temperature, while the nitrogen free extractable (NFE) content decreased and the protein, fiber, moisture, and ash content remained relatively unaffected. The phenolic content varied from species to species with E. gracilis having the highest and N. oculata the lowest content among the species studied. The results can be taken into account when cultivating the different microalgae studied in full scale applications, such as in open raceway bioreactors, where conditions could be adjusted to obtain the most favorable growth conditions, depending on the particular species cultivated.

The effect of covering material on the yield, quality and chemical composition of greenhouse-grown tomato fruit.

BACKGROUND: During the last few decades, greenhouse technology for horticultural crops has focused on retaining optimum conditions within the greenhouse environment that could allow for a compromise between maximum yields and minimum production costs. The aim of this study was to evaluate the effect of three greenhouse covering materials and five harvesting dates on the yield and quality parameters of hydroponically produced tomato fruit, as well as on energy consumption. RESULTS: Plants had a higher growth rate at early stages for S-PE cover material, while differences were minimized at later stages. Tocopherol content was the highest for ID-PE material and harvesting later than 170 days after transplanting (DAT), while sugar content (fructose and glucose) was the highest for S-PE material and 157 DAT. Organic acid content was the highest at early harvestings, especially for 7-PE and S-PE cover materials, while it exhibited decreasing trends at later harvesting dates. Antioxidant properties showed a varied response to cover materials and harvesting dates, while ß-carotene, carotenoids and chlorophylls were the highest for 7-PE material. CONCLUSIONS: The results showed that both cover materials and harvesting date may affect significantly tomato fruit quality, especially sugar and organic acid contents which are associated with fruit taste, as well as tocopherols which contribute to antioxidant properties and pigments that are associated with fruit ripening and earliness of marketable maturity. © 2018 Society of Chemical Industry.

Impact of Cultivar and Grafting on Nutrient and Water Uptake by Sweet Pepper (Capsicum annuum L.) Grown Hydroponically Under Mediterranean Climatic Conditions.

In closed-cycle hydroponic systems (CHS), nutrients and water should be delivered to the plants at identical ratios to those they are removed via plant uptake, to avoid their depletion or accumulation in the root zone. For a particular plant species and developmental stage, the nutrient to water uptake ratios, henceforth termed "uptake concentrations" (UC), remain relatively constant over time under similar climatic conditions. Thus, the nutrient to water uptake ratios can be used as nutrient concentrations in the nutrient solution (NS) supplied to CHS to compensate for nutrient and water uptake by plants. In the present study, mean UC of macro- and micronutrients were determined during five developmental stages in different pepper cultivars grown in a closed hydroponic system by measuring the water uptake and the nutrient removal from the recirculating NS. The experiment was conducted in a heated glasshouse located in Athens Mediterranean environment and the tested cultivars were 'Orangery,' 'Bellisa,' 'Sondela,' 'Sammy,' self-grafted and 'Sammy' grafted onto the commercial rootstock 'RS10' (Capsicum annuum). 'Sondela' exhibited significantly higher NO3-, Mg2+, Ca2+ and B UC, while Bellisa exhibited higher K UC in comparison with all other cultivars. The UC of all nutrients were similar in the grafted and the non-grafted 'Sammy' plants, which indicates that this Capsicum annum rootstock does not modify the uptake of nutrients and water by the scion. The UC of macronutrients estimated in the present study (mmol L-1) ranged from 2.4 to 3.7 for Ca, 1.0 to 1.5 for Mg, 6.2 to 9.0 for K, 11.7 to 13.7 for N, and 0.7 to 1.1 for P. The UC of N, K, Ca, and Mg were appreciably higher than the corresponding values found in Dutch tomato glasshouse, while that of P was similar in both locations during the vegetative stage and higher in the present study thereafter. The UC of Fe, Zn and B tended to decrease with time, while that of Mn increased initially and subsequently decreased slightly during the reproductive developmental stage.

Lichen Sclerosus of the Upper Lip: Report of a Case, Utilizing Shikata's Modified Orcein Stain, and Review of the Literature.

OBJECTIVES: Lichen sclerosus is a rare chronic inflammatory disorder, affecting mainly the skin and the anogenital mucosa, while oral lesions can be the primary or the only manifestation of the disease. A rare case of oral lichen sclerosus, assessed histopathologically and histochemically, is presented, along with a thorough review of the English language literature. MATERIAL AND METHODS: A 32-year-old female presented an asymptomatic white patch affecting the skin and the mucosa of the upper lip, without other mucocutaneous involvement. A partial biopsy of the lesion was performed, along with the histochemical Shikata's modified orcein stain for elastin fibres detection. A literature review was also performed, discussing the epidemiological data, clinical presentation, and treatment modalities of all published cases with oral involvement. RESULTS: The histopathological evaluation revealed the presence of acellular zone underneath the basal layer of the epithelium, accompanied by deep band-like chronic inflammation. Shikata's modified orcein stain exhibited scarcity or loss of elastin fibres in the acellular subepithelial area. The diagnosis of lichen sclerosus was made. Topical application of corticosteroids was prescribed and resolution of the lesion was observed. Literature review revealed that oral lichen sclerosus is predominantly presented in females, as asymptomatic lesions of the lips and buccal mucosa; few cases have extraoral manifestations and topical corticosteroids are the main treatment intervention. CONCLUSIONS: Despite its rarity, lichen sclerosus should be considered in the clinical and histopathological differential diagnosis of white patches of the oral mucosa. For rendering proper diagnosis, the histochemical Shikata's modified orcein stain is a useful assessment tool.

Lichenoid lesions of the upper lip: A retrospective study of 24 cases

BACKGROUND: Lichenoid lesions of the upper labial mucosa, without other oral or extraoral manifestations seem to be rare. The clinicopathologic features of 24 such cases are presented and the pertinent literature is reviewed. MATERIALS AND METHODS: 24 Caucasian patients that clinically presented lichenoid features on the upper labial mucosa, with or without lichenoid lesions on the adjacent gingiva, were included in the study. Clinical features were extracted from the patients' records, while dental plaque/calculus accumulation and composite resin restorations of the adjacent teeth were recorded. Four cases where an incisional biopsy was performed were further evaluated. RESULTS: There were 8 males and 16 females, with a mean age of 62.7 years. 64.2% were under hypertensive therapy. In 13 cases gingival involvement was noticed, 16 cases exhibited calculus deposition, while 6 cases presented with composite resin fillings of the adjacent teeth. In 4 cases an incisional biopsy was performed showing features of lichenoid reaction. In 37.5% significant improvement was observed after topical treatment with corticosteroids and antimicrobial agents. CONCLUSIONS: Lichenoid lesions of the upper lip may represent a distinct variety of oral lichenoid lesions, but as the number of cases reported so far is too small for definite conclusions on pathogenesis and management to be made, a long-term follow-up is mandatory