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1.
Biol Chem ; 382(8): 1197-205, 2001 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11592401

RESUMO

Urokinase-type plasminogen activator (uPA) represents a central molecule in pericellular proteolysis and is implicated in a variety of physiological and pathophysiological processes such as tissue remodelling, wound healing, tumor invasion, and metastasis. uPA binds with high affinity to a specific cell surface receptor, uPAR (CD87), via a well defined sequence within the N-terminal region of uPA (uPA19-31). This interaction directs the proteolytic activity of uPA to the cell surface which represents an important step in tumor cell proliferation, invasion, and metastasis. Due to its fundamental role in these processes, the uPA/uPAR-system has emerged as a novel target for tumor therapy. Previously, we have identified a synthetic, cyclic, uPA-derived peptide, cyclo19,31uPA19-31, as a lead structure for the development of low molecular weight uPA-analogues, capable of blocking uPA/uPAR-interaction [Burgle et al., Biol. Chem. 378 (1997), 231-237]. We now searched for peptide variants of cyclo19,31uPA19-31 with elevated affinities for uPAR binding. Among other tasks, we performed a systematic D-amino acid scan of uPA19-31, in which each of the 13 L-amino acids was individually substituted by the corresponding D-amino acid. This led to the identification of cyclo19,31[D-Cys19]-uPA19-31 as a potent inhibitor of uPA/uPAR-interaction, displaying only a 20 to 40-fold lower binding capacity as compared to the naturally occurring uPAR-ligands uPA and its amino-terminal fragment. Cyclo19,31[D-Cys19]-uPA19-31 not only blocks binding of uPA to uPAR but is also capable of efficiently displacing uPAR-bound uPA from the cell surface and to inhibit uPA-mediated, tumor cell-associated plasminogen activation and fibrin degradation. Thus, cyclo19,31[D-Cys19]-uPA19-31 represents a promising therapeutic agent to significantly affect the tumor-associated uPA/uPAR-system.


Assuntos
Fragmentos de Peptídeos/síntese química , Fragmentos de Peptídeos/farmacologia , Peptídeos Cíclicos/síntese química , Peptídeos Cíclicos/farmacologia , Receptores de Superfície Celular/metabolismo , Ativador de Plasminogênio Tipo Uroquinase/antagonistas & inibidores , Ativador de Plasminogênio Tipo Uroquinase/síntese química , Ativador de Plasminogênio Tipo Uroquinase/farmacologia , Substituição de Aminoácidos , Ligação Competitiva , Membrana Celular/metabolismo , Células Cultivadas , Fibrina/metabolismo , Humanos , Concentração Inibidora 50 , Fragmentos de Peptídeos/metabolismo , Peptídeos Cíclicos/metabolismo , Plasminogênio/metabolismo , Receptores de Superfície Celular/efeitos dos fármacos , Receptores de Ativador de Plasminogênio Tipo Uroquinase , Relação Estrutura-Atividade , Ativador de Plasminogênio Tipo Uroquinase/metabolismo
2.
J Cell Biol ; 150(1): 119-30, 2000 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-10893261

RESUMO

Drosophila melanogaster embryos are a source for homogeneous and stable 26S proteasomes suitable for structural studies. For biochemical characterization, purified 26S proteasomes were resolved by two-dimensional (2D) gel electrophoresis and subunits composing the regulatory complex (RC) were identified by amino acid sequencing and immunoblotting, before corresponding cDNAs were sequenced. 17 subunits from Drosophila RCs were found to have homologues in the yeast and human RCs. An additional subunit, p37A, not yet described in RCs of other organisms, is a member of the ubiquitin COOH-terminal hydrolase family (UCH). Analysis of EM images of 26S proteasomes-UCH-inhibitor complexes allowed for the first time to localize one of the RC's specific functions, deubiquitylating activity. The masses of 26S proteasomes with either one or two attached RCs were determined by scanning transmission EM (STEM), yielding a mass of 894 kD for a single RC. This value is in good agreement with the summed masses of the 18 identified RC subunits (932 kD), indicating that the number of subunits is complete.


Assuntos
Drosophila melanogaster/enzimologia , Peptídeo Hidrolases/química , Complexo de Endopeptidases do Proteassoma , Ubiquitinas/metabolismo , Animais , Eletroforese em Gel Bidimensional , Eletroforese em Gel de Poliacrilamida , Embrião não Mamífero/enzimologia , Substâncias Macromoleculares , Microscopia Eletrônica de Transmissão e Varredura , Modelos Moleculares , Dados de Sequência Molecular , Peso Molecular , Peptídeo Hidrolases/genética , Peptídeo Hidrolases/isolamento & purificação , Peptídeo Hidrolases/ultraestrutura , Estrutura Terciária de Proteína , Análise de Sequência de DNA , Análise de Sequência de Proteína , Homologia de Sequência de Aminoácidos , Tioléster Hidrolases/genética , Tioléster Hidrolases/metabolismo , Ubiquitina Tiolesterase
3.
Mol Microbiol ; 35(1): 173-9, 2000 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-10632887

RESUMO

An alpha-L-rhamnosidase clone was isolated from a genomic library of the thermophilic anaerobic bacterium Clostridium stercorarium and its primary structure was determined. The recombinant gene product, RamA, was expressed in Escherichia coli, purified to homogeneity and characterized. It is a dimer of two identical subunits with a monomeric molecular mass of 95 kDa in SDS polyacrylamide gel electrophoresis. At pH 7.5 it is optimally active at 60 degrees C and insensitive to moderate concentrations of Triton X100, ethanol and EDTA. It hydrolysed p-nitrophenyl-alpha-L-rhamnopyranoside, naringin and hesperidin with a specific activity of 82, 1.5 and 0.46 U mg-1 respectively. Hydrolysis occurs by inversion of the anomeric configuration as detected using 1H-NMR, indicating a single displacement mechanism. Naringin was hydrolysed to rhamnose and prunin, which could further be degraded by incubation with a thermostable beta-glucosidase. The secondary structure of RamA consists of 27% alpha-helices and 50% beta-sheets, as detected by circular dichroism. The primary structure of the ramA gene has no similarity to other glycoside hydrolase sequences and possibly is the first member of a new enzyme family.


Assuntos
Clostridium/enzimologia , Flavanonas , Glicosídeo Hidrolases/metabolismo , Sequência de Aminoácidos , Dicroísmo Circular , Clonagem Molecular , DNA Recombinante , Estabilidade Enzimática , Flavonoides/metabolismo , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/genética , Glicosídeos/metabolismo , Hesperidina/metabolismo , Concentração de Íons de Hidrogênio , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Temperatura
4.
Glycoconj J ; 17(10): 713-6, 2000 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-11425191

RESUMO

Amadori-modified proteins are bound by macrophages and monocytes via fructosyllysine-specific receptors. Detergent extracts from U937 cell membranes were used to purify the binding proteins by affinity purification on glycated polylysine coated magnetic beads followed by SDS-PAGE. Two proteins of 200 and 100kDa were isolated. MS-analysis of the 200 kDa protein showed high homologies with cellular myosin heavy chain, type A. Both fructosyllysine specific binding proteins, cellular myosin heavy chain and nucleolin, are glycosylated.


Assuntos
Proteínas de Membrana/isolamento & purificação , Proteínas de Membrana/metabolismo , Proteínas Motores Moleculares , Cadeias Pesadas de Miosina/isolamento & purificação , Cadeias Pesadas de Miosina/metabolismo , Sequência de Aminoácidos , Glicosilação , Humanos , Proteínas de Membrana/química , Dados de Sequência Molecular , Cadeias Pesadas de Miosina/química , Proteínas Nucleares , Fosfoproteínas/metabolismo , Proteínas de Ligação a RNA/metabolismo , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Células U937 , Nucleolina
5.
Insect Biochem Mol Biol ; 29(10): 861-71, 1999 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-10528407

RESUMO

In an effort to characterize the insect molting hormone bursicon from the cockroach, Periplaneta americana, amino acid sequences with high identity of Cu,Zn-superoxide dismutase (SOD) of Drosophila virilis were identified. Antisera against a conserved region of SOD, and a sequence unique to Periplaneta SOD were produced and used to test whether bursicon might be a form of SOD. Western blots of one- and two-dimensional gels revealed that the dimeric form of SOD and bursicon have a similar molecular mass (30 kDa). The two proteins can be separated, however, according to their different isoelectric points. Bursicon is identified in two-dimensional gels by elution from four unique spots not labeled by the anti-SOD antisera. In sections of Periplaneta nerve cords the antisera labeled glial material surrounding neuronal somata close to the neural sheath. Bursicon, however, is contained in unique cell pairs in the ganglia of the ventral nerve cord. These neurons were labeled with new antisera produced against novel sequences of one of the four above-mentioned bursicon active spots. The results show unequivocally that SOD and bursicon are distinctly different proteins. Furthermore, the anti-SOD antisera provided a tool to isolate and sequence bursicon.


Assuntos
Hormônios de Invertebrado/isolamento & purificação , Periplaneta/enzimologia , Superóxido Dismutase/isolamento & purificação , Sequência de Aminoácidos , Animais , Especificidade de Anticorpos , Western Blotting , Sistema Nervoso Central/enzimologia , Cromatografia Líquida de Alta Pressão , Ensaio de Imunoadsorção Enzimática , Feminino , Técnicas Imunoenzimáticas , Masculino , Dados de Sequência Molecular , Periplaneta/imunologia , Coelhos , Superóxido Dismutase/imunologia
6.
EMBO J ; 18(15): 4241-9, 1999 Aug 02.
Artigo em Inglês | MEDLINE | ID: mdl-10428962

RESUMO

Dictyostelium responds to hyperosmotic stress of 400 mOsm by a rapid reduction of its cell volume to 50%. The reduced cell volume is maintained as long as these osmotic conditions prevail. Dictyostelium does not accumulate compatible osmolytes to counteract the osmotic pressure applied. Using two-dimensional gel electrophoresis, we demonstrate that during the osmotic shock the protein pattern remains unaltered in whole-cell extracts. However, when cells were fractionated into membrane and cytoskeletal fractions, alterations of specific proteins could be demonstrated. In the crude membrane fraction, a 3-fold increase in the amount of protein was measured upon hyperosmotic stress. In the cytoskeletal fraction, the proteins DdLIM and the regulatory myosin light chain (RMLC) were shown to be regulated in the osmotic stress response. The elongation factors eEF1alpha (ABP50) and eEF1beta were found to increase in the cytoskeletal fraction, suggesting a translational arrest upon hyperosmotic stress. Furthermore, the two main components of the cytoskeleton, actin and myosin II, are phosphorylated as a consequence of the osmotic shock, with a tyrosine residue as the phosphorylation site on actin and three threonines in the case of the myosin II heavy chain.


Assuntos
Dictyostelium/metabolismo , Actinas/metabolismo , Sequência de Aminoácidos , Animais , Proteínas do Citoesqueleto/metabolismo , Eletroforese em Gel Bidimensional , Proteínas de Membrana/metabolismo , Dados de Sequência Molecular , Miosinas/metabolismo , Pressão Osmótica , Fosforilação , Ubiquitinas/metabolismo
7.
J Biol Chem ; 274(36): 25281-4, 1999 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-10464251

RESUMO

The proteolipid, a hydrophobic ATPase subunit essential for ion translocation, was purified from membranes of Methanococcus jannaschii by chloroform/methanol extraction and gel chromatography and was studied using molecular and biochemical techniques. Its apparent molecular mass as determined in SDS-polyacrylamide gel electrophoresis varied considerably with the conditions applied. The N-terminal sequence analysis made it possible to define the open reading frame and revealed that the gene is a triplication of the gene present in bacteria. In some of the proteolipids, the N-terminal methionine is excised. Consequently, two forms with molecular masses of 21,316 and 21,183 Da were determined by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. The molecular and biochemical data gave clear evidence that the mature proteolipid from M. jannaschii is a triplication of the 8-kDa proteolipid present in bacterial F(1)F(0) ATPases and most archaeal A(1)A(0) ATPases. Moreover, the triplicated form lacks a proton-translocating carboxyl group in the first of three pairs of transmembrane helices. This finding puts in question the current view of the evolution of H(+) ATPases and has important mechanistic consequences for the structure and function of H(+) ATPases in general.


Assuntos
Mathanococcus/química , Proteolipídeos/química , ATPases Translocadoras de Prótons/química , Espectrometria de Massas , Mathanococcus/metabolismo , Dobramento de Proteína , Bombas de Próton/química , Bombas de Próton/metabolismo , ATPases Translocadoras de Prótons/metabolismo
8.
Appl Microbiol Biotechnol ; 51(6): 852-9, 1999 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10422230

RESUMO

The upstream region of the cellobiohydrolase gene cbhA of Clostridium thermocellum F7 was sequenced. It was found that this region contains the previously sequenced gene celK encoding an enzyme closely related to CbhA (cellulosomal subunit S3). The presence of a putative transcription terminator in the 524-bp intergenic region indicates that celK and cbhA are not cotranscribed as an operon. Sequence comparison between the two cellobiohydrolases revealed high sequence conservation in the catalytic domain and in the N-terminal cellulose-binding domain (CBD) homologous to CBD family IV, which binds specifically to amorphous cellulose and soluble cellooligosaccharides. In contrast to CbhA, CelK lacks a family III CBD capable of binding to crystalline cellulose. By partial amino acid sequence determination CelK was shown to be identical to cellulosomal subunit S5. CelK and CbhA were found to be members of subfamily E1 of cellulase family E (glycosylhydrolase family 9). Sequence comparison of catalytic domains of family E1 cellulases with C. thermocellum CelD, a family E1 endoglucanase of known three-dimensional structure, revealed a significant variation in the lengths of substrate-binding loops connecting the helices of the (alpha/alpha)6 barrel fold. The extended loops of CelK and CbhA might form an active-site tunnel, as found in the catalytic domains of fungal cellobiohydrolases.


Assuntos
Celulase/genética , Clostridium/genética , Sequência de Aminoácidos , Sequência de Bases , Sítios de Ligação , Domínio Catalítico , Celulase/química , Celulose 1,4-beta-Celobiosidase , Clonagem Molecular , Clostridium/enzimologia , Clostridium/crescimento & desenvolvimento , Genes Bacterianos , Genes Duplicados , Dados de Sequência Molecular , Mapeamento Físico do Cromossomo , Alinhamento de Sequência , Análise de Sequência de DNA
9.
Gene ; 214(1-2): 205-13, 1998 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-9651529

RESUMO

Higher plants possess two distinct nuclear-encoded glucose-6-phosphate isomerase (GPI) isoenzymes, a cytosolic enzmye of the Embden-Meyerhof pathway and a chloroplast enzyme essential to storage and mobilization of carbohydrate fixed by the Calvin cycle. We have purified spinach chloroplast GPI to homogeneity, determined amino acid sequences from the active enzyme, and cloned cDNAs for chloroplast and cytosolic GPI isoenzymes from spinach. Sequence comparisons reveal three distantly related families of GPI genes that are non-uniformly distributed among contemporary eubacteria and archaebacteria, suggesting that ancient gene diversity existed for this glycolytic enzyme. Spinach chloroplast GPI is much more similar to its homologue from the cyanobacterium Synechocystis PCC6803 than it is to the enzyme from any other source, providing strong evidence that the gene for chloroplast GPI was acquired by the nucleus via endosymbiotic gene transfer from the cyanobacterial antecedants of chloroplasts. Eukaryotic nuclear genes for cytosolic GPI are more similar to eubacterial than to archaebacterial homologues, suggesting that these too were acquired by eukaryotes from eubacteria, probably during the course of the endosymbiotic origin of mitochondria. Chloroplast and cytosolic GPI provide evidence for a eubacterial origin of yet another component of the eukaryotic glycolytic pathway.


Assuntos
Genes Bacterianos , Genes de Plantas , Glucose-6-Fosfato Isomerase/genética , Spinacia oleracea/enzimologia , Spinacia oleracea/genética , Sequência de Aminoácidos , Bactérias/classificação , Bactérias/enzimologia , Bactérias/genética , Sequência de Bases , Cloroplastos/enzimologia , Cloroplastos/genética , Clonagem Molecular , Cianobactérias/classificação , Cianobactérias/enzimologia , Cianobactérias/genética , Citosol/enzimologia , Primers do DNA/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Variação Genética , Haemophilus/enzimologia , Haemophilus/genética , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase , Homologia de Sequência de Aminoácidos , Spinacia oleracea/microbiologia , Simbiose/genética
10.
J Bacteriol ; 180(12): 3091-9, 1998 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-9620957

RESUMO

The nucleotide sequence of the Clostridium thermocellum F7 cbhA gene, coding for the cellobiohydrolase CbhA, has been determined. An open reading frame encoding a protein of 1,230 amino acids was identified. Removal of a putative signal peptide yields a mature protein of 1,203 amino acids with a molecular weight of 135,139. Sequence analysis of CbhA reveals a multidomain structure of unusual complexity consisting of an N-terminal cellulose binding domain (CBD) homologous to CBD family IV, an immunoglobulin-like beta-barrel domain, a catalytic domain homologous to cellulase family E1, a duplicated domain similar to fibronectin type III (Fn3) modules, a CBD homologous to family III, a highly acidic linker region, and a C-terminal dockerin domain. The cellulosomal localization of CbhA was confirmed by Western blot analysis employing polyclonal antibodies raised against a truncated enzymatically active version of CbhA. CbhA was identified as cellulosomal subunit S3 by partial amino acid sequence analysis. Comparison of the multidomain structures indicates striking similarities between CbhA and a group of cellulases from actinomycetes. Average linkage cluster analysis suggests a coevolution of the N-terminal CBD and the catalytic domain and its spread by horizontal gene transfer among gram-positive cellulolytic bacteria.


Assuntos
Celulase/química , Celulase/metabolismo , Clostridium/enzimologia , Sequência de Aminoácidos , Sequência de Bases , Membrana Celular/enzimologia , Celulase/genética , Celulose 1,4-beta-Celobiosidase , Clostridium/genética , DNA Bacteriano/genética , Dados de Sequência Molecular , Conformação Proteica , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos
11.
Biochemistry ; 37(25): 9001-8, 1998 Jun 23.
Artigo em Inglês | MEDLINE | ID: mdl-9636043

RESUMO

The 18 kDa cytochrome c553 is the dominant c-type cytochrome in cell membranes of Heliobacterium gestii. After solubilization, this cytochrome was purified in three steps as a complex with two other proteins of 32 and 42 kDa. The redox midpoint potential of the cytochrome c553 was determined to be +215 mV. The EPR spectra clearly show the presence of an ascorbate-reducible low-spin heme with gz = 3.048 and gy = 2.238. The gx = trough could not be detected. In addition, a Cu(II) signal with g = 2.058 was observed, indicating that one component of the cytochrome c553 complex contains a bound copper ion. The gene for the 18 kDa cytochrome c553, cyhA, consists of 429 bp coding for a protein of 142 amino acids. The association of the cytochrome with the cytoplasmic membrane is mediated by two fatty acid molecules, one palmitate and one stearate, that could be identified by mass spectrometry. Both fatty acids are most likely bound to the cysteine residue of the N-terminally processed protein via a glycerol moiety. The amino acid sequence deduced from the DNA sequence exhibits partial identity to the membrane-bound cytochrome c551 from Bacillus PS3 [Fujiwara, Y., Oka, M., Hamamoto, T., and Sone, N. (1993) Biochem. Biophys. Res. Commun. 1144, 213-219] and to the cytochrome c subunit (NorC) of the nitrous reductase from Pseudomonas stutzeri [Zumft, W. G., Braun, C., and Cuypers, H. (1994) Eur. J. Biochem. 219, 481-490].


Assuntos
Bactérias/enzimologia , Bactérias/genética , Proteínas de Bactérias/química , Grupo dos Citocromos c/química , Grupo dos Citocromos c/genética , Genes Bacterianos , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Sequência de Bases , Cromatografia Líquida de Alta Pressão , Grupo dos Citocromos c/isolamento & purificação , Citocromos/isolamento & purificação , Espectroscopia de Ressonância de Spin Eletrônica , Proteínas de Membrana/isolamento & purificação , Modelos Moleculares , Dados de Sequência Molecular , Peso Molecular , Processamento de Proteína Pós-Traducional , Espectrofotometria Ultravioleta
12.
Biosci Biotechnol Biochem ; 62(2): 302-8, 1998 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-9532787

RESUMO

Thermoanaerobic bacteria are of considerable interest as producers of thermostable amylolytic enzymes. The soluble amylolytic enzyme system of Thermoanaerobacterium thermosaccharolyticum DSM 571 was fractionated into a pullulanase, a glucoamylase, and an alpha-glucosidase. The enzymes were purified to homogeneity and their physical and catalytic properties were studied. The pullulanase, which cleaved both alpha-1,4- and alpha-1,6-glucosidic bonds, was an amylopullulanase closely related to similar enzymes from other thermoanaerobic bacteria. Partial amino acid sequences of the glucoamylase were identical with the corresponding sequences deduced from the cga gene encoding the glucoamylase from Clostridium sp. strain G0005. The alpha-glucosidase was identified as an isomaltase belonging to a group of structurally related exo-alpha-1,4-glucosidases and oligo-1,6-glucosidases from bacilli. Comparison of enzyme activities indicated that the glucoamylase had the major amylolytic activity of T. thermosaccharolyticum, with amylopullulanase and alpha-glucosidase assisting in the cleavage of alpha-1,6-glucosidic bonds.


Assuntos
Clostridium/enzimologia , Glucana 1,4-alfa-Glucosidase/isolamento & purificação , Glicosídeo Hidrolases/isolamento & purificação , alfa-Glucosidases/isolamento & purificação , Sequência de Aminoácidos , Fracionamento Químico , Cromatografia em Agarose , Cromatografia Líquida de Alta Pressão , Cromatografia por Troca Iônica , Eletroforese em Gel de Poliacrilamida , Glucana 1,4-alfa-Glucosidase/química , Glucana 1,4-alfa-Glucosidase/metabolismo , Glucanos/metabolismo , Glucose/metabolismo , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/metabolismo , Concentração de Íons de Hidrogênio , Hidrólise , Focalização Isoelétrica , Dados de Sequência Molecular , Peso Molecular , Alinhamento de Sequência , Amido/metabolismo , Especificidade por Substrato , Temperatura , Ultrafiltração , alfa-Glucosidases/química , alfa-Glucosidases/metabolismo
13.
J Protein Chem ; 16(5): 349-62, 1997 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-9246614

RESUMO

A novel approach to the on-line mass determination of peptides from digested proteins by scanning infrared matrix-assisted laser desorption/ionization (scanning-IR-MALDI) is described. The peptides were continuously collected directly onto a PVDF (polyvinylidene fluoride) strip during a HPLC run. Individual peptides were detected by lining up the PVDF strip with the UV trace from the HPLC run, using visible dye markers as reference points. The local resolution of the peptides on the PVDF membrane is preserved during matrix incubation for MALDI-MS as shown by comparing the UV chromatogram and the total ion current (TIC) from an on-line coupled electrospray ionization (ESI) mass spectrometer with the scanning-IR-MALDI data from the corresponding areas on the PVDF strip. The intensities of the mass profiles obtained by scanning-IR-MALDI reflect the amount of peptides present on the PVDF strip. The higher sensitivity of IR-MALDI-MS yielded mass information not detectable by ESI-MS. After the scanning-IR-MALDI experiment, the same membrane strip can be used directly for automated Edman degradation. Comparable initial and repetitive yields were obtained for blotted peptides with and without matrix incubation.


Assuntos
Membranas Artificiais , Fragmentos de Peptídeos/análise , Mapeamento de Peptídeos/métodos , Polivinil , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Cromatografia Líquida de Alta Pressão/métodos , Espectrometria de Massas/métodos , Microquímica , Sensibilidade e Especificidade , Espectrofotometria Infravermelho/métodos , Espectrofotometria Ultravioleta
14.
Biol Chem ; 378(3-4): 231-7, 1997.
Artigo em Inglês | MEDLINE | ID: mdl-9165076

RESUMO

Focusing of the serine protease urokinase-type plasminogen activator (uPA) to the cell surface via interaction with its specific receptor (uPAR, CD87) is an important step for tumor cell invasion and metastasis. The ability of a synthetic peptide derived from the uPAR-binding region of uPA (comprising amino acids 16-32 of uPA; uPA(16-32)) to inhibit binding of fluorescently labeled uPA to uPAR on human promyeloid U937 cells was assessed by quantitative flow cytofluorometric analysis (FACS) and compared to the inhibitory capacities of other synthetic peptides known to interfere with uPA/uPAR-interaction. An about 3000-fold molar excess of uPA(16-32) resulted in 50% inhibition of pro-uPA binding to cell surface-associated uPAR. Using a solid-phase uPA-ligand binding assay employing recombinant soluble uPAR coated to microtiter plates, the minimal binding region of wild-type uPA was determined. The linear peptide uPA(19-31) and its more stable disulfide-bridged cyclic form (cyclo(19,31)uPA(19-31)) displayed uPAR-binding activity whereas other peptides such as uPA(18-30), uPA(20-32) or uPA(20-30) did not react with uPAR. Cyclic peptide derivatives of cyclo(19,31)uPA(19-31) in which certain amino acids were deleted and/or replaced by other amino acids as well as uPAR-derived wild-type peptides did also not inhibit uPA/uPAR-interaction. Therefore, the present investigations identified cyclo(19,31)uPA(19-31) as a potential lead structure for the development of uPA-peptide analogues to block uPA/uPAR-interaction.


Assuntos
Peptídeos/farmacologia , Receptores de Superfície Celular/antagonistas & inibidores , Ativador de Plasminogênio Tipo Uroquinase/antagonistas & inibidores , Sequência de Aminoácidos , Cromatografia Líquida de Alta Pressão , Citometria de Fluxo , Humanos , Ligantes , Espectrometria de Massas , Dados de Sequência Molecular , Peptídeos/síntese química , Peptídeos/isolamento & purificação , Receptores de Superfície Celular/metabolismo , Receptores de Ativador de Plasminogênio Tipo Uroquinase , Células Tumorais Cultivadas , Ativador de Plasminogênio Tipo Uroquinase/metabolismo
15.
Mol Biol Cell ; 8(1): 83-95, 1997 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-9017597

RESUMO

A protein purified from cytoskeletal fractions of Dictyostelium discoideum proved to be a member of the fimbrin/plastin family of actin-bundling proteins. Like other family members, this Ca(2+)-inhibited 67-kDa protein contains two EF hands followed by two actin-binding sites of the alpha-actinin/beta-spectrin type. Dd plastin interacted selectively with actin isoforms: it bound to D. discoideum actin and to beta/gamma-actin from bovine spleen but not to alpha-actin from rabbit skeletal muscle. Immunofluorescence labeling of growth phase cells showed accumulation of Dd plastin in cortical structures associated with cell surface extensions. In the elongated, streaming cells of the early aggregation stage, Dd plastin was enriched in the front regions. To examine how the bundled actin filaments behave in myosin II-driven motility, complexes of F-actin and Dd plastin were bound to immobilized heavy meromyosin, and motility was started by photoactivating caged ATP. Actin filaments were immediately propelled out of bundles or even larger aggregates and moved on the myosin as separate filaments. This result shows that myosin can disperse an actin network when it acts as a motor and sheds light on the dynamics of protein-protein interactions in the cortex of a motile cell where myosin II and Dd plastin are simultaneously present.


Assuntos
Actinas/metabolismo , Dictyostelium/química , Glicoproteínas de Membrana/química , Proteínas dos Microfilamentos , Miosinas/metabolismo , Fosfoproteínas/metabolismo , Actinas/ultraestrutura , Sequência de Aminoácidos , Animais , Sítios de Ligação , Cálcio/metabolismo , Cálcio/farmacologia , Bovinos , Reagentes de Ligações Cruzadas , Dictyostelium/crescimento & desenvolvimento , Dictyostelium/ultraestrutura , Glicoproteínas de Membrana/metabolismo , Dados de Sequência Molecular , Músculo Esquelético/química , Miosinas/ultraestrutura , Fosfoproteínas/química , Fosfoproteínas/genética , Coelhos , Homologia de Sequência de Aminoácidos , Baço/química
16.
J Biol Chem ; 271(49): 31735-41, 1996 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-8940198

RESUMO

alpha2-HS glycoprotein is a major protein of human plasma whose function is still obscure. A proteolytically processed form of alpha2-HS glycoprotein lacking a segment of 40 amino acid residues bridging its heavy and light chain portions ("connecting peptide") has been described suggesting that this peptide is released by post-translational processing to fulfill biological role(s) of alpha2-HS glycoprotein. To test this hypothesis we investigated how the connecting peptide is released from the parental molecule by limited proteolysis. We developed monoclonal antibodies to various portions of the connecting peptide and its NH2-terminal flanking region which cross-react with the native alpha2-HS glycoprotein. Purified alpha2-HS glycoprotein from human plasma was subjected to limited proteolysis by proteinases including trypsin, chymotrypsin, elastase plasmin, kallikrein, thrombin, and renin. Immunoprint analysis of the proteolytic digests indicated that alpha2-HS glycoprotein is readily cleaved in its connecting peptide region. NH2-terminal amino sequence analysis of the generated fragments demonstrated that a single proteinase, chymotrypsin, cleaves the critical Leu-Leu bond flanking the NH2-terminal portion of the connecting peptide region. Most but not all of the other proteinase cleavage sites map to a short stretch of 9 residues located in the center portion of the connecting peptide region. Immunoprint analysis of plasma samples from patients with sepsis demonstrate that the connecting peptide region is cleaved under pathological conditions. Our results indicate that the connecting peptide and/or fragments thereof are readily releasable from alpha2-HS glycoprotein in vitro and in vivo.


Assuntos
Proteínas Sanguíneas/metabolismo , Quimotripsina/metabolismo , alfa-Fetoproteínas/metabolismo , Sequência de Aminoácidos , Animais , Anticorpos Monoclonais , Mapeamento de Epitopos , Humanos , Camundongos , Dados de Sequência Molecular , alfa-2-Glicoproteína-HS
17.
J Biol Chem ; 271(44): 27765-9, 1996 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-8910371

RESUMO

The high affinity DNA binding factor (HDF) protein of Saccharomyces cerevisiae is composed of two subunits and specifically binds ends of double-stranded DNA. The 70-kDa subunit, HDF1, shows significant homology with the 70-kDa subunit of the human Ku protein. Like the Ku protein, HDF1 has been shown to be involved in recombination and double stranded DNA break repair. We have purified and cloned HDF2, the second subunit of the HDF protein. The amino acid sequence of HDF2 shows a 45.6% homology with the 80-kDa subunit of the Ku protein. HDF1 by itself does not bind DNA, while HDF2 protein on its own seems to displays DNA binding activity. Targeted disruption of the HDF2 gene causes a temperature-sensitive phenotype for growth comparable to the phenotype of hdf1(-) strains. The human Ku protein cannot complement this temperature-sensitive phenotype. hdf2(-) strains are sensitive to bleomycin and methyl methanesulfonate, but this sensitivity is reduced in comparison with hdf1(-) strains.


Assuntos
Antígenos Nucleares , DNA Helicases , Reparo do DNA , Proteínas de Ligação a DNA/metabolismo , Proteínas Nucleares/metabolismo , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/metabolismo , Fatores de Transcrição/metabolismo , Bleomicina/farmacologia , DNA Fúngico/metabolismo , Proteínas de Ligação a DNA/biossíntese , Proteínas de Ligação a DNA/química , Proteínas Fúngicas/biossíntese , Proteínas Fúngicas/metabolismo , Teste de Complementação Genética , Humanos , Autoantígeno Ku , Substâncias Macromoleculares , Metanossulfonato de Metila/farmacologia , Proteínas Nucleares/biossíntese , Plasmídeos , Saccharomyces cerevisiae/efeitos dos fármacos , Saccharomyces cerevisiae/genética , Homologia de Sequência de Aminoácidos
18.
Eur J Biochem ; 240(2): 373-9, 1996 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-8841401

RESUMO

Homospermidine synthase (HSS) catalyzes the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD(+)-dependent reaction. In this study, the enzyme was purified from anaerobically grown cultures of the photosynthetic bacterium Rhodopseudomonas viridis to electrophoretic homogeneity using a three-step procedure. The enzyme was shown to be a homodimer of 52-kDa subunits. Six endopeptidase LysC fragments were sequenced from the purified protein. With the aid of degenerate primers designed against these peptides, specific PCR products from R. viridis DNA were obtained that were used as hybridization probes to isolate the hss gene from a library constructed in lambda EMBL4. The hss gene and flanking regions were sequenced and were shown to exist as a single copy in the R. viridis genome. HSS is translated from a monocistronic mRNA and possesses no detectable similarity to previously sequenced gene products. Escherichia coli, which lacks HSS activity, was transformed with an expression plasmid containing the hss coding region under the control of a bacteriophage T7 promoter. Upon induction, transformed F. coli cells accumulate enzymatically active and highly stable R. viridis HSS at levels corresponding to 40-50% of the soluble protein in crude extracts.


Assuntos
Alquil e Aril Transferases , Clonagem Molecular , Rodopseudomonas/enzimologia , Transferases/genética , Transferases/isolamento & purificação , Sequência de Aminoácidos , Sítios de Ligação , Primers do DNA , Diaminas/metabolismo , Eletroforese em Gel de Poliacrilamida , Escherichia coli/genética , Expressão Gênica , Genes Bacterianos , Dados de Sequência Molecular , Peso Molecular , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Mapeamento por Restrição , Rodopseudomonas/genética , Análise de Sequência , Transferases/biossíntese , Transferases/química
19.
Curr Biol ; 6(6): 739-49, 1996 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-8793300

RESUMO

BACKGROUND: Staphylothermus marinus, an archaeon isolated from a geothermally heated marine environment, is a peptide-fermenting, sulphur-dependent organism with an optimum growth temperature of 92 degrees C. It forms grapes of cells, which adhere to each other and to sulphur granules via their surface layer. This glycoprotein layer forms a canopy which is held at a distance of about 70 nm from the cell membrane by membrane-anchored stalks, thereby enclosing a 'quasi-periplasmic space'. Two copies of a globular protease, which probably serves an exodigestive function related to the organism's energy metabolism, are attached near the middle of each stalk. RESULTS: We have purified and characterized this protease with regard to its enzymatic properties and thermostability, and have sequenced its gene using an approach based entirely on the polymerase chain reaction. The precursor form is 1345 amino acids long; between residues 64-741, it contains a domain with clear homology to subtilisins, which is interrupted by two large insertions. The enzyme has a broad substrate specificity and a pH optimum of 9.0. It is fully stable from pH 3.2 to 12.7 and is resistant to heat-inactivation to 95 degrees C in the free form and to 125 degrees C in the stalk-bound form. CONCLUSIONS: This protease is one of the most stable proteases known. Its high resistance towards denaturing agents makes it an interesting target for practical applications. Despite its large size, it is clearly a member of the subtilisin family and represents the only known enzyme that is a stoichiometric S-layer component.


Assuntos
Archaea/enzimologia , Proteínas da Membrana Bacteriana Externa/metabolismo , Glicoproteínas de Membrana/metabolismo , Subtilisinas/metabolismo , Sequência de Aminoácidos , Proteínas da Membrana Bacteriana Externa/antagonistas & inibidores , Proteínas da Membrana Bacteriana Externa/química , Proteínas da Membrana Bacteriana Externa/isolamento & purificação , Concentração de Íons de Hidrogênio , Glicoproteínas de Membrana/antagonistas & inibidores , Glicoproteínas de Membrana/química , Glicoproteínas de Membrana/isolamento & purificação , Modelos Moleculares , Dados de Sequência Molecular , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Subtilisinas/antagonistas & inibidores , Subtilisinas/química , Subtilisinas/isolamento & purificação , Temperatura
20.
J Virol ; 69(11): 6751-7, 1995 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-7474086

RESUMO

Viral infection of host cells primarily depends on binding of the virus to a specific cell surface protein. In order to characterize the binding protein for group B coxsackieviruses (CVB), detergent-solubilized membrane proteins of different cell lines were tested in virus overlay protein-binding assays. A prominent virus-binding protein with a molecular mass of 100 kDa was detected in various CVB-permissive human and monkey cell lines but was not detected in nonpermissive cell lines. The specificity of CVB binding to the 100-kDa protein on permissive human cells was substantiated by binding of all six serotypes of CVB and by competition experiments. In contrast, poliovirus and Sendai virus did not bind to the 100-kDa CVB-specific protein. A fraction of HeLa membrane proteins enriched in the range of 100 kDa showed functional activity by transforming infectious CVB (160S) into A-particles (135S). In order to purify this CVB-binding protein, solubilized membrane proteins from HeLa cells were separated by preparative sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by elution of the 100-kDa protein. Amino acid sequence analysis of tryptic fragments of the CVB-binding protein indicated that this 100-kDa CVB-specific protein is a cell surface protein related to nucleolin. These results were confirmed by immunoprecipitations of the CVB-binding protein with nucleolin-specific antibodies, suggesting that a nucleolin-related membrane protein acts as a specific binding protein for the six serotypes of CVB.


Assuntos
Proteínas de Transporte/metabolismo , Enterovirus Humano B/fisiologia , Receptores Virais/metabolismo , Sequência de Aminoácidos , Proteínas de Transporte/química , Proteínas de Transporte/isolamento & purificação , Linhagem Celular , Eletroforese em Gel Bidimensional , Eletroforese em Gel de Poliacrilamida , Enterovirus Humano B/classificação , Células HeLa , Humanos , Dados de Sequência Molecular , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/isolamento & purificação , Receptores Virais/química , Receptores Virais/isolamento & purificação , Sorotipagem , Ensaio de Placa Viral
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