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1.
J Am Chem Soc ; 132(29): 10148-54, 2010 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-20597502

RESUMO

Ribozymes must fold into compact, native structures to function properly in the cell. The first step in forming the RNA tertiary structure is the neutralization of the phosphate charge by cations, followed by collapse of the unfolded molecules into more compact structures. The specificity of the collapse transition determines the structures of the folding intermediates and the folding time to the native state. However, the forces that enable specific collapse in RNA are not understood. Using time-resolved SAXS, we report that upon addition of 5 mM Mg(2+) to the Azoarcus group I ribozyme up to 80% of chains form compact structures in less than 1 ms. In 1 mM Mg(2+), the collapse transition produces extended structures that slowly approach the folded state, while > or = 1.5 mM Mg(2+) leads to an ensemble of random coils that fold with multistage kinetics. Increased flexibility of molecules in the intermediate ensemble correlates with a Mg(2+)-dependent increase in the fast folding population and a previously unobserved crossover in the collapse kinetics. Partial denaturation of the unfolded RNA with urea also increases the fraction of chains following the fast-folding pathway. These results demonstrate that the preferred collapse mechanism depends on the extent of Mg(2+)-dependent charge neutralization and that non-native interactions within the unfolded ensemble contribute to the heterogeneity of the ribozyme folding pathways at the very earliest stages of tertiary structure formation.


Assuntos
Azoarcus/enzimologia , RNA Catalítico/química , Espalhamento a Baixo Ângulo , Difração de Raios X , Cinética , Magnésio/farmacologia , Conformação de Ácido Nucleico/efeitos dos fármacos , RNA Catalítico/metabolismo , Fatores de Tempo
2.
Osteoporos Int ; 17(7): 1022-32, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-16601920

RESUMO

INTRODUCTION: The objective of this study was to determine the effect of a moderate reduction of dietary magnesium [50% of nutrient requirement (50% NR)] on bone and mineral metabolism in the rat, and to explore possible mechanisms for the resultant reduced bone mass. METHODS: Female rats were 6 weeks of age at the start of study. Serum magnesium (Mg), calcium (Ca), parathyroid hormone (PTH), 1,25(OH)(2)-vitamin D, alkaline phosphatase, osteocalcin, and pyridinoline were measured during the study at 3- and 6-month time points in control (dietary Mg of 100% NR) and Mg-deficient animals (dietary Mg at 50% NR). Femurs and tibias were also collected for mineral content analyses, micro-computerized tomography, histomorphometry, and immunohistochemical localization of substance P, TNFalpha, and IL-1beta at 3 and 6 months. RESULTS: Although no significant change in serum Mg was observed, Mg deficiency developed, as assessed by the reduction in bone Mg content at the 3- and 6-month time points (0.69+/-0.05 and 0.62+/-0.04% ash, respectively, in the Mg depletion group compared to 0.74+/-0.04 and 0.67+/-0.04% ash, respectively, in the control group; p=0.0009). Hypercalcemia did not develop. Although serum Ca level remained in the normal range, it fell significantly with Mg depletion at 3 and 6 months (10.4+/-0.3 and 9.6+/-0.3 mg/dl, respectively, compared to 10.5+/-0.4 and 10.1+/-0.6 mg/dl, respectively, in the control group; p=0.0076). The fall in serum Ca in the Mg-depleted animals was associated with a fall in serum PTH concentration between 3 and 6 months (603+/-286 and 505+/-302 pg/ml, respectively, although it was still higher than the control). The serum 1,25(OH)(2)-vitamin D level was significantly lower in the Mg depletion group at 6 months (10.6+/-7.1 pg/ml) than in the control (23.5+/- 12.7 pg/ml) (p<0.01 by the t-test). In Mg-deficient animals, no difference was noted in markers of bone turnover. Trabecular bone mineral content gain was less over time in the distal femur with Mg deficiency at 3 and 6 months (0.028+/-0.005 and 0.038+/-0.007 g, respectively, compared to 0.027+/-0.004 and 0.048+/-0.006 g, respectively, in the control group; p<0.005). Histomorphometry at these time points demonstrated decreased trabecular bone volume (15.76+/-1.93 and 14.19+/-1.85%, respectively, compared to 19.24+/-3.10 and 17.30+/-2.59%, respectively, in the control group; p=0.001). Osteoclast number was also significantly increased with Mg depletion (9.07+/-1.21 and 13.84+/-2.06, respectively, compared to 7.02+/-1.89 and 10.47+/-1.33, respectively, in the control group; p=0.0003). Relative to the control, immunohistochemical staining intensity of the neurotransmitter substance P and of the cytokines TNFalpha and IL-1beta was increased in cells of the bone microenvironment in the Mg depletion group, suggesting that inflammatory cytokines may contribute to bone loss. CONCLUSION: These data demonstrate that Mg intake of 50% NR in the rat causes a reduced bone mineral content and reduced volume of the distal femur. These changes may be related to altered PTH and 1,25(OH)(2)-vitamin D formation or action as well as to an increase release of substance P and the inflammatory cytokines TNFalpha and IL-1beta.


Assuntos
Densidade Óssea , Osso e Ossos/metabolismo , Deficiência de Magnésio/complicações , Magnésio/administração & dosagem , Osteoporose/etiologia , Animais , Peso Corporal , Osso e Ossos/patologia , Calcitriol/sangue , Cálcio/sangue , Feminino , Interleucina-1beta/análise , Hormônio Paratireóideo/sangue , Ratos , Ratos Sprague-Dawley , Substância P/análise , Fator de Necrose Tumoral alfa/análise
3.
Poult Sci ; 83(3): 428-32, 2004 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-15049496

RESUMO

An experiment was conducted to determine the effects of soybean meal (SBM) particle size on broiler performance, particularly P utilization. This experiment utilized a 2 x 2 x 2 factorial design with the following variables: SBM particle size, P level, and diet type, either corn-SBM or semipurified. SBM was obtained from a processing plant before (geometric mean diameter 1,239 microm) and after (891 microm) hammer milling. The P levels were 0.5% total P for deficient diets and 0.7% total P for adequate P diets. The coarse SBM improved bone ash (P < 0.05), gain:feed ratios (P < 0.1), and plasma P levels (P < 0.1). The diets with 0.5% P resulted in overall poorer performance as 16-d BW was reduced, gain:feed ratio decreased, bone ash decreased, and rickets incidence increased. Chicks fed the semipurified diets also had lower 16-d BW, lower gain-to-feed ratio, and lower bone ash. There was a significant interaction between the diet type and the soy particle size when the corn-SBM meal diets were fed because the coarse SBM increased plasma P levels, whereas there was little effect when the semipurified diets were fed. There were also significant interactions observed between these variables on growth and gain:feed ratio in that the coarse SBM elicited a much more dramatic response when incorporated into the semipurified diets as opposed to the corn-SBM diets. The results suggest that large particle size soybean meal may be more efficiently utilized than fine particle size soybean meal.


Assuntos
Fenômenos Fisiológicos da Nutrição Animal , Galinhas/fisiologia , Dieta , Glycine max , Tamanho da Partícula , Animais , Osso e Ossos/química , Osso e Ossos/fisiologia , Manipulação de Alimentos , Fósforo/sangue , Fósforo na Dieta/administração & dosagem , Fósforo na Dieta/análise , Aumento de Peso , Zea mays
4.
Br Poult Sci ; 42(4): 484-92, 2001 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11572624

RESUMO

1. The effects of maize particle size and steam pelleting on growth and nutrient utilisation were studied with broiler chicks. 2. The presence or absence of 10 microg/kg of 1,25 dihydroxycholecalciferol in diets adequate or deficient in phosphorus was also investigated. Food efficiency was superior with the fine maize diets but calcium retention and phytate phosphorus retention were greatest with the coarse maize diets. Pelleting improved food efficiency and growth in both experiments while phytate phosphorus utilisation was decreased. 3. Addition of 1,25-dihydroxycholecalciferol to the diet increased 16-d body weight, bone ash, plasma dialysable phosphorus and retentions of total phosphorus and phytate phosphorus while decreasing phosphorus deficiency rickets and tibial dyschondroplasia. 4. There were significant interactions between maize particle size and food form. The improvement in calcium retention observed with the coarse maize diets was reduced when the diets were pelleted. When fed as a mash, coarse maize diets resulted in increased plasma dialysable phosphorus levels but when the diet was pelleted this response was eliminated. 5. There was also a significant interaction between particle size and phosphorus concentration in that chicks given diets deficient in phosphorus had improved bone ash when fed coarse maize as compared to fine maize. However, this response was eliminated when the diets were adequate in phosphorus. 6. In one experiment, fine maize diets had higher metabolisable energy values and there was a significant interaction between maize particle size and food form as pelleting improved the metabolisable energy value of coarse maize diets but not fine maize diets. In another experiment only pelleting of the factors studied improved the metabolisable energy value of the diets.


Assuntos
Calcitriol/administração & dosagem , Galinhas/crescimento & desenvolvimento , Galinhas/metabolismo , Fósforo na Dieta/administração & dosagem , Zea mays/metabolismo , Ração Animal , Animais , Desenvolvimento Ósseo , Calcitriol/metabolismo , Galinhas/fisiologia , Dieta , Incidência , Osteocondrodisplasias/epidemiologia , Osteocondrodisplasias/metabolismo , Osteocondrodisplasias/veterinária , Tamanho da Partícula , Fósforo na Dieta/metabolismo , Ácido Fítico/metabolismo , Doenças das Aves Domésticas/epidemiologia , Doenças das Aves Domésticas/metabolismo , Distribuição Aleatória
6.
Chemistry ; 7(9): 1889-98, 2001 May 04.
Artigo em Inglês | MEDLINE | ID: mdl-11405467

RESUMO

Split-and-mix libraries of resin-bound "tweezer" receptors have been prepared and screened to identify receptors for dye-labelled tripeptides. The receptors incorporate a diamidopyridine unit to serve as a specific recognition site for the CO2H group, leading to strong and selective receptors for peptide guests with a CO2H terminus. The role of the dye-label, attached to the peptide guest to allow visualisation of selective recognition events in the screening experiments, has also been examined and was found to have a significant influence on the binding selectivities.


Assuntos
Técnicas de Química Combinatória , Peptídeos/metabolismo , Receptores de Peptídeos/química , Sequência de Aminoácidos , Desenho de Fármacos , Mimetismo Molecular , Biblioteca de Peptídeos , Peptídeos/síntese química , Ligação Proteica , Receptores de Peptídeos/metabolismo , Especificidade por Substrato
7.
Poult Sci ; 80(3): 314-9, 2001 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11261562

RESUMO

One hundred forty-three broiler chick excreta samples were obtained from previous experiments dealing with phytate phosphorus utilization. The air-dried samples were ground in a Cyclotech 1093 sample mill and analyzed for the following: moisture, N, Ca, energy, total P, and phytate P. By chemical assay, the sample compositions were moisture: mean = 9.62, SD = 1.27% (range = 7.37-13.59); N: mean = 5.31, SD = 0.37% (range = 4.28 to 6.48); Ca: mean = 1.66, SD = 0.32% (range = 0.85 to 2.6); total P: mean = 1.13, SD = 0.28% (range = 0.66 to 1.75); gross energy: mean = 3,560, SD = 120 kcal/kg (range = 3,309 to 3,882); phytate P: mean = 0.63, SD = 0.17% (range = 0.32 to 0.97). The samples were scanned in a Feed & Forage Analyzer Model 5000 with near-infrared reflectance spectroscopy (NIRS)-2 Software. One hundred twenty-three samples were used to create the calibration curves (20 randomly selected samples were set aside for validating the calibration). The combination of math treatments and scatter corrections that provided the best standard error of cross validation (and its correlation coefficient) was chosen for the standard curves. The coefficients of determination (R2) were moisture, 0.96; N, 0.88; Ca, 0.84; total P, 0.91; gross energy, 0.86; and phytate P, 0.86. The standard errors of prediction were moisture, 0.342%; N, 0.193%; Ca, 0.143%; total P, 0.134%; gross energy, 74.66 kcal; and phytate P, 0.91%. We concluded that it is possible to predict the moisture, N, Ca, gross energy, total P, and phytate P in broiler excreta by using NIRS.


Assuntos
Ração Animal/análise , Galinhas/metabolismo , Fezes/química , Espectroscopia de Luz Próxima ao Infravermelho/veterinária , Animais , Cálcio/análise , Calibragem , Galinhas/urina , Nitrogênio/análise , Fósforo/análise , Ácido Fítico/análise , Reprodutibilidade dos Testes , Espectroscopia de Luz Próxima ao Infravermelho/métodos , Água/análise
8.
J Wildl Dis ; 36(3): 436-44, 2000 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10941727

RESUMO

Aflatoxins, toxic metabolites of Aspergillus flavus or Aspergillus parasiticus, cause poor feed utilization, decreased weight gains, depressed immune function, liver dysfunction, coagulation abnormalities, and death in a wide variety of species including humans. Conservationists have become concerned that increasingly popular wildlife feeding or baiting practices could expose wildlife to toxic amounts of aflatoxin-contaminated grains. In particular, the effects of aflatoxins on the wild turkey (Meleagris gallopova silvestris) are of concern because the conspecific domestic turkey is highly susceptible to aflatoxins. To evaluate the effect of dietary aflatoxin on wild turkeys, four groups of 4-mo-old wild turkeys were fed diets containing either 0, 100, 200, or 400 micrograms aflatoxin/kg feed for 2 wk in September and October 1996. Aflatoxin-fed poults had decreased feed consumption and weight gains as compared with control poults. Decreased liver-to-body weight ratios, liver enzyme alterations, slightly altered blood coagulation patterns, and mild histologic changes indicated low-level liver damage. Compromise of cell-mediated immunity was indicated by decreased lymphoblast transformation. The effects were apparent in all treatment groups to variable levels, but significant differences most often were found at 400 micrograms aflatoxin/kg feed. This study shows that short-term aflatoxin ingestion by wild turkeys can induce undesirable physiologic changes; therefore, exposure of wild turkeys to feeds containing aflatoxin levels of 100 micrograms aflatoxin/kg feed or more should be avoided.


Assuntos
Aflatoxinas/toxicidade , Perus/fisiologia , Aflatoxinas/administração & dosagem , Ração Animal/toxicidade , Animais , Contagem de Células Sanguíneas/veterinária , Análise Química do Sangue/veterinária , Coagulação Sanguínea/efeitos dos fármacos , Relação CD4-CD8/veterinária , Carotenoides/sangue , Ingestão de Alimentos/efeitos dos fármacos , Imunofenotipagem/veterinária , Fígado/efeitos dos fármacos , Ativação Linfocitária/efeitos dos fármacos , Perus/sangue , Perus/imunologia , Aumento de Peso/efeitos dos fármacos
9.
J Wildl Dis ; 36(2): 393-6, 2000 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-10813626

RESUMO

Blood samples taken from 48 4-mo-old wild turkeys (Meleagris gallopova silvestris) were used to establish reference intervals for hematology and serum chemistry values. The study was conducted during September and October 1996. Packed cell volume, total and differential white cell counts, total protein, albumin, glucose, calcium, uric acid, triglyceride concentrations, as well as aspartate transaminase (AST) and lactate dehydrogenase (LDH) activities were assayed. Reference intervals from wild turkeys are similar to those reported for domestic turkeys.


Assuntos
Perus/sangue , Envelhecimento/sangue , Animais , Animais Selvagens/sangue , Análise Química do Sangue/veterinária , Feminino , Testes Hematológicos/veterinária , Masculino , Valores de Referência
10.
Acta Crystallogr C ; 56(Pt 5): E224-6, 2000 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-15263164

RESUMO

Compounds (I), C(14)H(20)N(2)O(4)S, and (II), C(12)H(14)N(2)O(3)S(2), are two minor products of the same reaction. Both structures contain identical ester functionalities in similar orientations. Both independent molecules of (I) contain an ethoxycarbothioylamine moiety, whilst (II) possesses a novel exocyclic thione system fused with a pyridine ring.

11.
J Clin Microbiol ; 34(8): 2004-6, 1996 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-8818899

RESUMO

Mycobacterium genavense, a fastidious opportunist in patients with AIDS, cannot be identified by conventional biochemical methods. Computerized mycolic acid analysis by high-performance liquid chromatography offers an alternative that distinguishes the mycolic acid profile of M. genavense from those of all other organisms in the database developed at the Centers for Disease Control and Prevention.


Assuntos
Mycobacterium/química , Mycobacterium/classificação , Ácidos Micólicos/análise , Técnicas de Tipagem Bacteriana , Cromatografia Líquida de Alta Pressão , Análise por Conglomerados , Simulação por Computador , Humanos , Modelos Químicos , Infecções por Mycobacterium/microbiologia , Especificidade da Espécie
12.
J Clin Microbiol ; 34(5): 1100-7, 1996 May.
Artigo em Inglês | MEDLINE | ID: mdl-8727884

RESUMO

A distinct group of slowly growing mycobacteria was identified on the basis of growth characteristics, biochemical and lipid profiles, and nucleic acid analyses. The isolates showed growth at 22 to 37 degrees C, yellow pigmentation, and negative tests for Tween 80 hydrolysis, nicotinic acid, nitrate reductase, and urease; tests for arylsulfatase, pyrazinamidase, and heat-stable catalase were variable. Analysis of cellular fatty acids by gas-liquid chromatography and mycolic acids by thin-layer chromatography and high-performance liquid chromatography indicated a distinctive pattern which was unlike those of other species. Determination of the 16S rRNA gene sequence showed a unique sequence closely related to Mycobacterium simiae and M. genavense. On the basis of DNA homology studies, we suggest that these organisms are representatives of a novel species, for which the name M. lentiflavum sp. nov. is proposed.


Assuntos
Mycobacterium/classificação , Mycobacterium/isolamento & purificação , Técnicas de Tipagem Bacteriana , Sequência de Bases , Primers do DNA/genética , DNA Bacteriano/genética , DNA Ribossômico/genética , Enzimas/análise , Ácidos Graxos/análise , Genes Bacterianos , Humanos , Dados de Sequência Molecular , Mycobacterium/genética , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Homologia de Sequência do Ácido Nucleico , Especificidade da Espécie
13.
Antimicrob Agents Chemother ; 40(4): 839-45, 1996 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-8849237

RESUMO

Oxazolidinones make up a relatively new class of antimicrobial agents which possess a unique mechanism of bacterial protein synthesis inhibition. U-100592 (S)-N-[[3-[3-fluoro-4-[4-(hydroxyacetyl)-1-piperazinyl]- phenyl]-2-oxo-5-oxazolidinyl]methyl]-acetamide and U-100766 (S)-N-[[3-[3-fluoro-4-(4-morpholinyl)phenyl]- 2-oxo-5-oxazolidinyl]methyl]-acetamide are novel oxazolidinone analogs from a directed chemical modification program. MICs were determined for a variety of bacterial clinical isolates; the respective MICs of U-100592 and U-100766 at which 90% of isolates are inhibited were as follows: methicillin-susceptible Staphylococcus aureus, 4 and 4 micrograms/ml; methicillin-resistant S. aureus, 4 and 4 micrograms/ml; methicillin-susceptible Staphylococcus epidermidis, 2 and 2 micrograms/ml; methicillin-resistant S. epidermidis, 1 and 2 micrograms/ml; Enterococcus faecalis, 2 and 4 micrograms/ml; Enterococcus faecium, 2 and 4 micrograms/ml; Streptococcus pyogenes, 1 and 2 micrograms/ml; Streptococcus pneumoniae, 0.50 and 1 microgram/ml; Corynebacterium spp., 0.50 and 0.50 micrograms/ml; Moraxella catarrhalis, 4 and 4 micrograms/ml; Listeria monocytogenes, 8 and 2 micrograms/ml; and Bacteroides fragilis, 16 and 4 micrograms/ml. Most strains of Mycobacterium tuberculosis and the gram-positive anaerobes were inhibited in the range of 0.50 to 2 micrograms/ml. Enterococcal strains resistant to vancomycin (VanA, VanB, and VanC resistance phenotypes), pneumococcal strains resistant to penicillin, and M. tuberculosis strains resistant to common antitubercular agents (isoniazid, streptomycin, rifampin, ethionamide, and ethambutol) were not cross-resistant to the oxazolidinones. The presence of 10, 20, and 40% pooled human serum did not affect the antibacterial activities of the oxazolidinones. Time-kill studies demonstrated a bacteriostatic effect of the analogs against staphylococci and enterococci but a bactericidal effect against streptococci. The spontaneous mutation frequencies of S. aureus ATCC 29213 were <3.8 x 10(-10) and <8 x 10(-11) for U-100592 and U-100766, respectively. Serial transfer of three staphylococcal and two enterococcal strains on drug gradient plates produced no evidence of rapid resistance development. Thus, these new oxazolidinone analogs demonstrated in vitro antibacterial activities against a variety of clinically important human pathogens.


Assuntos
Acetamidas/farmacologia , Antibacterianos/farmacologia , Bactérias/efeitos dos fármacos , Oxazóis/farmacologia , Oxazolidinonas , Resistência Microbiana a Medicamentos , Linezolida , Testes de Sensibilidade Microbiana , Vancomicina/farmacologia
14.
J Med Chem ; 39(3): 680-5, 1996 Feb 02.
Artigo em Inglês | MEDLINE | ID: mdl-8576910

RESUMO

During the course of our investigations in the oxazolidinone antibacterial agent area, we have identified a subclass with especially potent in vitro activity against mycobacteria. The salient structural feature of these oxazolidinone analogues, 6 (U-100480), 7 (U-101603), and 8 (U-101244), is their appended thiomorpholine moiety. The rational design, synthesis, and evaluation of the in vitro antimycobacterial activity of these analogues is described. Potent activity against a screening strain of Mycobacterium tuberculosis was demonstrated by 6 and 7 (minimum inhibitory concentrations or MIC's < or = 0.125 micrograms/mL). Oxazolidinones 6 and 8 exhibit MIC90 values of 0.50 micrograms/mL or less against a panel of organisms consisting of five drug-sensitive and five multidrug-resistant strains of M. tuberculosis, with 6 being the most active congener. Potent in vitro activity against other mycobacterial species was also demonstrated by 6. For example, 6 exhibited excellent in vitro activity against multiple clinical isolates of Mycobacterium avium complex (MIC's = 0.5-4 micrograms/mL). Orally administered 6 displays in vivo efficacy against M. tuberculosis and M. avium similar to that of clinical comparators isoniazid and azithromycin, respectively. Consideration of these factors, along with a favorable pharmaco-kinetic and chronic toxicity profile in rats, suggests that 6 (U-100480) is a promising antimycobacterial agent.


Assuntos
Acetamidas/síntese química , Acetamidas/farmacologia , Antibacterianos/química , Antibacterianos/farmacologia , Mycobacterium avium/efeitos dos fármacos , Mycobacterium tuberculosis/efeitos dos fármacos , Oxazóis/síntese química , Oxazóis/farmacologia , Acetamidas/farmacocinética , Animais , Antibacterianos/farmacocinética , Espectroscopia de Ressonância Magnética , Espectrometria de Massas , Testes de Sensibilidade Microbiana , Oxazóis/farmacocinética , Ratos
15.
Int J Syst Bacteriol ; 46(1): 280-97, 1996 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-8573508

RESUMO

During previous cooperative numerical taxonomic studies of slowly growing mycobacteria, the International Working Group on Mycobacterial Taxonomy described a number of strains whose taxonomic status was ambiguous. A new study of DNA, RNA, and proteins from 66 of these organisms was performed to correlate their properties with phenotypic clustering behavior; the results of this study permitted 51 of the strains studied to be assigned to known species. The methods used to characterize the semantides included nucleotide sequencing and assessment of levels of semantide relatedness by affinity binding techniques, including whole DNA-DNA hybridization, probe hybridization, and antibody binding. There was good overall agreement between the phenotypic and chemotaxonomic clusters and the groups of organisms identified by semantide analyses. Our results supported the conclusion that we should continue to rely on polyphasic taxonomy to provide satisfactory systematic resolution of members of the genus Mycobacterium. We identified no single 16S rRNA interstrain nucleotide sequence difference value that unequivocally defined species boundaries. DNA-DNA hybridization remains the gold standard, but common resources are needed to permit DNA-DNA hybridization analyses to be made available to laboratories that are not prepared to use this technology. One of the large novel clusters which we studied corresponds to the recently described species Mycobacterium interjectum, a pathogen that resembles the nonpathogen Mycobacterium gordonae phenotypically. We also identified strains that appear to represent ribovars of Mycobacterium intracellulare which do not react with the commercial diagnostic probes that are currently used for identification of this species. Other branches or clusters consisted of too few strains to permit a decision about their taxonomic status to be made.


Assuntos
Mycobacterium/classificação , Proteínas de Bactérias/genética , DNA Bacteriano/genética , Dados de Sequência Molecular , Mycobacterium/química , Mycobacterium/genética , Fenótipo , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética
16.
J Infect Dis ; 170(1): 151-6, 1994 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-8014491

RESUMO

Three epidemiologically linked multidrug-resistant (MDR) tuberculosis (TB) outbreaks in 1990-1991 involving New York State (NYS) inmates suggested MDR-TB was widespread in NYS prisons. Inmate lists were linked to 1990-1992 TB registries, medical records were reviewed, and movement histories for inmates with MDR-TB were examined within and between prisons and hospitals. In 1990-1991, 171 inmates were diagnosed with TB. This rate (156.2/100,000) was significantly higher than the 1990-1991 US rate (10.4/100,000) and the 1986 rate among NYS inmates (105.5/100,000). Of 171 cases, 155 were cultured-confirmed; 37 (32%) of 116 with drug susceptibilities determined had MDR-TB. Two other inmates with TB before 1990 were diagnosed with MDR-TB in 1990-1991. Of 39 inmates with MDR-TB, 38 (97%) were infected with the human immunodeficiency virus and 34 (87%) have died. These 39 lived in 23 of the 68 NYS prisons while potentially infectious; 12 were transferred through 20 prisons while ill with MDR-TB. Policies of correctional systems on infection control and inmate transfers need to be reevaluated to prevent spread of TB.


Assuntos
Surtos de Doenças , Prisões , Tuberculose Resistente a Múltiplos Medicamentos/epidemiologia , Adulto , Estudos de Casos e Controles , Feminino , Seguimentos , Humanos , Masculino , New York/epidemiologia , Estudos Retrospectivos
17.
J Clin Microbiol ; 32(3): 740-5, 1994 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-8195387

RESUMO

Current methods for identifying mycobacteria by high-performance liquid chromatography (HPLC) require a visual assessment of the generated chromatographic data, which often involves time-consuming hand calculations and the use of flow charts. Our laboratory has developed a personal computer-based file containing patterns of mycolic acids detected in 45 species of Mycobacterium, including both slowly and rapidly growing species, as well as Tsukamurella paurometabolum and members of the genera Corynebacterium, Nocardia, Rhodococcus, and Gordona. The library was designed to be used in conjunction with a commercially available pattern recognition software package, Pirouette (Infometrix, Seattle, Wash.). Pirouette uses the K-nearest neighbor algorithm, a similarity-based classification method, to categorize unknown samples on the basis of their multivariate proximities to samples of a preassigned category. Multivariate proximity is calculated from peak height data, while peak heights are named by retention time matching. The system was tested for accuracy by using 24 species of Mycobacterium. Of the 1,333 strains evaluated, > or = 97% were correctly identified. Identification of M. tuberculosis (n = 649) was 99.85% accurate, and identification of the M. avium complex (n = 211) was > or = 98% accurate; > or = 95% of strains of both double-cluster and single-cluster M. gordonae (n = 47) were correctly identified. This system provides a rapid, highly reliable assessment of HPLC-generated chromatographic data for the identification of mycobacteria.


Assuntos
Técnicas Bacteriológicas , Cromatografia Líquida de Alta Pressão , Mycobacterium/química , Mycobacterium/classificação , Ácidos Micólicos/análise , Algoritmos , Técnicas de Tipagem Bacteriana/estatística & dados numéricos , Técnicas Bacteriológicas/estatística & dados numéricos , Cromatografia Líquida de Alta Pressão/estatística & dados numéricos , Estudos de Avaliação como Assunto , Humanos , Mycobacterium/isolamento & purificação , Reconhecimento Automatizado de Padrão , Software , Especificidade da Espécie
18.
Ann Intern Med ; 120(2): 118-25, 1994 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-8256970

RESUMO

OBJECTIVE: To describe 13 infections caused by Mycobacterium haemophilum. DESIGN: Identification of patients by microbiologic record review, followed by medical record review and a case-control study. SETTING: Seven metropolitan hospitals in New York. PATIENTS: All patients with M. haemophilum infections diagnosed between January 1989 and September 1991 and followed through September 1992. Surviving patients were enrolled in the case-control study. RESULTS: Infection with M. haemophilum causes disseminated cutaneous lesions, bacteremia, and diseases of the bones, joints, lymphatics, and the lungs. Improper culture techniques may delay laboratory diagnosis, and isolates may be identified incorrectly as other mycobacterial species. Persons with profound deficits in cell-mediated immunity have an increased risk for infection. These include persons with human immunodeficiency virus infection or lymphoma and those receiving medication to treat immunosuppression after organ transplant. Various antimycobacterial regimens have been used with apparent success to treat M. haemophilum infection. However, standards for defining antimicrobial susceptibility to the organism do not exist. CONCLUSIONS: Clinicians should consider this pathogen when evaluating an immunocompromised patient with cutaneous ulcerating lesions, joint effusions, or osteomyelitis. Microbiologists must be familiar with the fastidious growth requirements of this organism and screen appropriate specimens for mycobacteria using an acid-fast stain. If acid-fast bacilli are seen, M. haemophilum should be considered as the infecting organism as well as other mycobacteria, and appropriate media and incubation conditions should be used.


Assuntos
Hospedeiro Imunocomprometido , Infecções por Mycobacterium/diagnóstico , Infecções por Mycobacterium/epidemiologia , Infecções Oportunistas Relacionadas com a AIDS/diagnóstico , Infecções Oportunistas Relacionadas com a AIDS/tratamento farmacológico , Infecções Oportunistas Relacionadas com a AIDS/epidemiologia , Síndrome da Imunodeficiência Adquirida/imunologia , Adulto , Transplante de Medula Óssea/imunologia , Estudos de Casos e Controles , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Mycobacterium/isolamento & purificação , Mycobacterium/fisiologia , Infecções por Mycobacterium/tratamento farmacológico , Cidade de Nova Iorque/epidemiologia
19.
J Clin Microbiol ; 31(12): 3231-9, 1993 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-8308116

RESUMO

Mycobacterium chelonae-like organisms are nonpigmented rapidly growing mycobacteria whose clinical significance is unknown. We evaluated 87 sporadic isolates encountered in a clinical laboratory. Most isolates (62%) were respiratory; only 2 of 54 (4%) (both from patients with AIDS) were clinically significant. Among 33 nonrespiratory isolates, 20 of 33 (or 61%) were clinically significant. Clinical diseases included posttraumatic wound infections and catheter-related sepsis. Routine biochemical features included growth inhibition by 5% NaCl (100%), a smooth colony morphology (94%), positive 3-day arylsulfatase reaction (84%), no color or a light tan color on iron uptake (100%), and variable nitrate reduction (45%). Additional characteristics that helped to separate this group from M. chelonae and Mycobacterium abscessus were susceptibility to cephalothin (90%) and ciprofloxacin (100%), utilization of mannitol (94%) and citrate (83%) as carbon sources, and unique patterns of mycolic acid esters by high-performance liquid chromatography. This group was quite drug susceptible, with 100% of isolates inhibited by amikacin, imipenem, cefoxitin, cefmetazole, and the newer quinolones ciprofloxacin and ofloxacin. Three examples of this group, including a proposed type strain, have been deposited in the American Type Culture Collection.


Assuntos
Mycobacterium chelonae/isolamento & purificação , Técnicas Bacteriológicas , Resistência Microbiana a Medicamentos , Humanos , Testes de Sensibilidade Microbiana , Infecções por Mycobacterium não Tuberculosas/microbiologia , Mycobacterium chelonae/efeitos dos fármacos , Mycobacterium chelonae/metabolismo , Especificidade da Espécie , Terminologia como Assunto , Microbiologia da Água
20.
J Infect Dis ; 168(4): 1052-5, 1993 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-8104226

RESUMO

From January 1990 to December 1991, 16 patients with multidrug-resistant tuberculosis (MDR-TB) caused by Mycobacterium tuberculosis resistant to isoniazid, rifampin, and streptomycin were diagnosed at Elmhurst Hospital. Compared with other TB patients, MDR-TB patients were more likely to have human immunodeficiency virus (HIV) infection (14/16 vs. 21/204, P < .001) and a prior admission (10/16 vs. 3/204, P < .001). HIV-infected patients hospitalized for > 10 days within three rooms of an infectious MDR-TB patient had higher risk of acquiring MDR-TB than did HIV-infected patients with shorter hospitalizations or locations further from the MDR-TB patient(s) (6/28 vs. 2/90, P < .001). Isolates of 6 of 8 MDR-TB patients in a chain of transmission were identical by restriction fragment length polymorphism DNA typing. Ambulation on the wards of inadequately masked TB patients and lack of negative pressure in isolation rooms probably facilitated transmission. This report documents nosocomial transmission of MDR-TB and underscores the need for effective isolation practices and facilities in health care institutions.


Assuntos
Infecções Oportunistas Relacionadas com a AIDS/transmissão , Infecção Hospitalar/transmissão , Resistência a Medicamentos , Mycobacterium tuberculosis/isolamento & purificação , Tuberculose/transmissão , Infecções Oportunistas Relacionadas com a AIDS/microbiologia , Infecção Hospitalar/microbiologia , DNA Bacteriano/genética , DNA Bacteriano/isolamento & purificação , Hospitais Urbanos , Humanos , Isoniazida/toxicidade , Mycobacterium tuberculosis/efeitos dos fármacos , Mycobacterium tuberculosis/genética , Cidade de Nova Iorque , Polimorfismo de Fragmento de Restrição , Rifampina/toxicidade , Estreptomicina/toxicidade , Fatores de Tempo , Tuberculose/microbiologia
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