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1.
Sci Rep ; 11(1): 23691, 2021 12 08.
Artigo em Inglês | MEDLINE | ID: mdl-34880360

RESUMO

Real-time quantitative reverse transcription polymerase chain reaction (qRT-PCR), a primary approach for evaluating gene expression, requires an appropriate normalization strategy to confirm relative gene expression levels by comparison, and rule out variations that might occur in analytical procedures. The best option is to use a reference gene whose expression level is stable across various experimental conditions to compare the mRNA levels of a target gene. However, there is limited information on how the reference gene is differentially expressed at different ages (growth) in small invertebrates with notable changes such as molting. In this study, expression profiles of nine candidate reference genes from the brackish water flea, Diaphanosoma celebensis, were evaluated under diverse exposure to toxicants and according to growth. As a result, four different algorithms showed similar stabilities of genes for chemical exposures in the case of limited conditions using the same developmental stage (H2A was stable, whereas Act was fairly unstable in adults), while the results according to age showed a significantly different pattern in suite of candidate reference genes. This affected the results of genes EcRA and GST, which are involved in development and detoxification mechanisms, respectively. Our finding is the first step towards establishing a standardized real-time qRT-PCR analysis of this environmentally important invertebrate that has potential for aquatic ecotoxicology, particularly in estuarine environments.


Assuntos
Exposição Ambiental , Regulação da Expressão Gênica/efeitos dos fármacos , Genes de Insetos , Águas Salinas , Sifonápteros/efeitos dos fármacos , Sifonápteros/genética , Poluentes Químicos da Água/efeitos adversos , Animais , Exposição Ambiental/efeitos adversos , Perfilação da Expressão Gênica , Reação em Cadeia da Polimerase em Tempo Real , Águas Salinas/química
3.
Ecotoxicol Environ Saf ; 179: 310-317, 2019 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-31030948

RESUMO

Bisphenol A (BPA) is a representative endocrine disrupting chemical (EDC) that has estrogenic effects in aquatic animals. In recent years, due to the continuing usage of BPA, its analogues have been developed as alternative substances to replace its use. The molting process is a pivotal point in the development and reproduction of crustaceans. However, studies of the effects of EDCs on molting in crustaceans at the molecular level are scarce. In the present study, we examined the acute toxicity of BPA and its analogues bisphenol F (BPF) and S (BPS) to the brackish water flea Diaphanosoma celebensis. We further identified four ecdysteroid pathway - related genes (cyp314a1, EcRA, EcRB, and USP) in D. celebensis, and investigated the transcriptional modulation of these genes during molting and after exposure to BPA and its analogues for 48 h. Sequencing and phylogenetic analyses revealed that these four genes are highly conserved among arthropods and may be involved in development and reproduction in the adult stage. The mRNA expression patterns of cyp314a1, EcRA and USP were matched with the molting cycle, suggesting that these genes play a role in the molting process in the adult stage in cladocerans. Following relative real-time polymerase chain reaction (RT-PCR) analyses, BPA and its analogues were found to modulate the expression of each of these four genes differently, indicating that these compounds can disrupt the normal endocrine system function of D. celebensis. This study improves our understanding of the molecular mode of action of BPA and its analogues in D. celebensis.


Assuntos
Compostos Benzidrílicos/toxicidade , Cladocera/efeitos dos fármacos , Ecdisona/genética , Disruptores Endócrinos/toxicidade , Fenóis/toxicidade , Águas Salinas/química , Poluentes Químicos da Água/toxicidade , Animais , Compostos Benzidrílicos/química , Cladocera/genética , Cladocera/metabolismo , Ecdisona/metabolismo , Fenóis/química , Filogenia , Testes de Toxicidade Aguda , Transcrição Gênica/efeitos dos fármacos
4.
Ecotoxicology ; 28(2): 167-174, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30612256

RESUMO

Alkylphenols are well-known endocrine disruptors and may cause developmental and reproductive disorders in aquatic organisms. Daphnia magna is commonly used in ecotoxicological studies as a promising model species to investigate the effects of endocrine distruptors. In the present study, transcriptional modulation of eleven potential molecular indicators related to detoxification, antioxidant, development, and cellular stress was analyzed in D. magna exposed to different concentrations of bisphenol A (BPA) and 4-nonylphenol (4-NP) for 24 h and 48 h, using real-time qPCR. A hierarchical clustering analysis was applied to investigate relations among molecular markers depending on the compound, exposure duration, and concentration. Our findings suggested that GSH-related systems and stress proteins may be involved in cellular defense against BPA and 4-NP-mediated toxicity with different modes of action. Furthermore, these compounds may interrupt molting and reproduction in daphnids. In particular, D. magna GSH-related genes seem to be strongly affected by 4-NP exposure, indicating their potential as molecular biomarkers.


Assuntos
Compostos Benzidrílicos/toxicidade , Daphnia/efeitos dos fármacos , Fenóis/toxicidade , Poluentes Químicos da Água/toxicidade , Animais , Biomarcadores , Daphnia/fisiologia , Relação Dose-Resposta a Droga , Fatores de Tempo , Testes de Toxicidade
5.
Hereditas ; 155: 36, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30473655

RESUMO

To develop a brackish water flea as a promising model for marine monitoring, Diaphanosoma celebensis were exposed to two pollutants, cadmium (Cd) and benzo[a]pyrene (BaP), which have different chemical characteristics and distinct modes of metabolic action on aquatic animals. Twenty-four hours after exposure to Cd (2 mg/L) or BaP (25 µg/L), whole body transcriptomes were analyzed. In total, 99.6 Mbp were assembled from nine libraries, resulting in 98,458 transcripts with an N50 of 1883 bp and an average contig length of 968 bp. Functional gene annotations were performed using Gene Ontology, Eukaryotic Orthologous Groups, and Kyoto Encyclopedia of Genes and Genomes pathway analyses. Cd significantly modulated endocrine and digestive enzyme system. Following BaP treatment, DNA repair and circadian rhythm related metabolisms were significantly modulated. Both the chemicals induced stress response and detoxification metabolism. This brackish water flea genomic information will be useful to monitor estuaries and coastal regions, as water fleas have been confirmed as promising sentinel models in freshwater ecosystems.


Assuntos
Benzo(a)pireno/toxicidade , Cádmio/toxicidade , Ritmo Circadiano/genética , Cladocera/genética , Reparo do DNA/genética , Transcriptoma , Poluentes Químicos da Água/toxicidade , Animais , Cladocera/efeitos dos fármacos , Ecotoxicologia , Perfilação da Expressão Gênica
6.
Aquat Toxicol ; 196: 35-42, 2018 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-29328974

RESUMO

Because of its widespread use, the pharmaceutical acetaminophen (APAP) is frequently detected in aquatic environments. APAP can have serious physiological effects, such as reduced reproduction, low growth rates, and abnormal behavior, in aquatic organisms. However, the methods available for evaluation of the aquatic toxicity of APAP are of limited usefulness. The present study aimed to develop reliable and sensitive markers for evaluation of APAP toxicity using Daphnia as a model organism. We focused on N-acetyl-p-benzoquinoneimine (NAPQI) production from APAP via cytochrome P450 metabolism because NAPQI causes APAP toxicity. Daphnia magna were exposed to APAP (0, 50, or 100 mg/L for 12 h or 24 h), and the total metabolites were extracted and analyzed for NAPQI. Direct detection of NAPQI was difficult because of its high reactivity, and its peak was close to that for APAP. Therefore, we tried to identify molecular and biochemical indicators associated with NAPQI generation, elimination, and its interactions with macromolecules. We identified changes in CYP370A13 gene expression, glutathione depletion, inhibition of thioredoxin reductase activity, and production of reactive oxygen species as indicators of D. magna exposure to APAP. These indicators could be used to develop sensitive and accurate techniques to evaluate the environmental toxicity of APAP.


Assuntos
Acetaminofen/toxicidade , Sistema Enzimático do Citocromo P-450/metabolismo , Daphnia/efeitos dos fármacos , Poluentes Químicos da Água/toxicidade , Acetaminofen/análise , Acetaminofen/metabolismo , Animais , Benzoquinonas/análise , Benzoquinonas/toxicidade , Cromatografia Líquida de Alta Pressão , Sistema Enzimático do Citocromo P-450/genética , Daphnia/metabolismo , Expressão Gênica/efeitos dos fármacos , Glutationa/metabolismo , Iminas/análise , Iminas/toxicidade , Inativação Metabólica , Masculino , Espécies Reativas de Oxigênio/metabolismo , Tiorredoxina Dissulfeto Redutase/metabolismo
7.
Mitochondrial DNA B Resour ; 3(1): 46-47, 2017 Dec 22.
Artigo em Inglês | MEDLINE | ID: mdl-33474060

RESUMO

Thoracican barnacles are common in hydrothermal vent fields. Here, we characterized the first mitogenome of a hydrothermal vent barnacle. The mitogenome of Eochionelasmus ohtai was 15,585 bp in length and had the typical pancrustacean gene arrangement. Its protein-coding genes (PCGs) were very similar in terms of length, AT content, and start and stop codons to those of other thoracican species. The phylogenetic tree constructed with 13 PCGs divided balanomorph barnacles, including E. ohtai, into two clades. This will further our understanding of the evolution of hydrothermal vent barnacles using mitogenomes, although further mitogenomic analysis of undetermined taxa is required.

8.
Bull Environ Contam Toxicol ; 98(2): 183-189, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27995293

RESUMO

Many studies of the toxic effects of zinc oxide nanoparticles (ZnO NPs) in aquatic organisms have been performed because of increasing ZnO NP use. However, the toxicological pathways are not understood. In this study, ZnO NPs were found to be more toxic than ZnSO4 to zebrafish larvae, but ZnO NP toxicity did not involve transcript alterations. Biological processes affected by ZnO NPs and ZnSO4 were investigated by performing ingenuity pathway analysis on differently expressed genes in larvae exposed to sub-lethal ZnO NP and ZnSO4 concentrations. We identified upregulated and downregulated differently expressed genes in fish exposed to ZnO NPs and ZnSO4, and found that ZnO NPs slightly induced cell differentiation and pathways associated with the immune system and activated several key genes involved in cancer cell signaling. The results may be key to predicting and elucidating the mechanisms involved in ZnO NP and ZnSO4 toxicity in zebrafish larvae.


Assuntos
Nanopartículas/toxicidade , Peixe-Zebra/genética , Óxido de Zinco/toxicidade , Sulfato de Zinco/toxicidade , Animais , Diferenciação Celular/efeitos dos fármacos , Diferenciação Celular/genética , Exposição Ambiental , Regulação da Expressão Gênica/efeitos dos fármacos , Larva/efeitos dos fármacos , Larva/genética , Transdução de Sinais/efeitos dos fármacos
9.
PLoS One ; 11(8): e0160763, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27504894

RESUMO

Zinc oxide nanoparticles (ZnO NPs) are being utilized in an increasing number of fields and commercial applications. While their general toxicity and associated oxidative stress have been extensively studied, the toxicological pathways that they induce in developmental stages are still largely unknown. In this study, the developmental toxicity of ZnO NPs to embryonic/larval zebrafish was investigated. The transcriptional expression profiles induced by ZnO NPs were also investigated to ascertain novel genomic responses related to their specific toxicity pathway. Zebrafish embryos were exposed to 0.01, 0.1, 1, and 10 mg/L ZnO NPs for 96 h post-fertilization. The toxicity of ZnO NPs, based on their Zn concentration, was quite similar to that in embryonic/larval zebrafish exposed to corresponding ZnSO4 concentrations. Pericardial edema and yolk-sac edema were the principal malformations induced by ZnO NPs. Gene-expression profiling using microarrays demonstrated 689 genes that were differentially regulated (fold change >1.5) following exposure to ZnO NPs (498 upregulated, 191 downregulated). Several genes that were differentially regulated following ZnO NP exposure shared similar biological pathways with those observed with ZnSO4 exposure, but six genes (aicda, cyb5d1, edar, intl2, ogfrl2 and tnfsf13b) associated with inflammation and the immune system responded specifically to ZnO NPs (either in the opposite direction or were unchanged in ZnSO4 exposure). Real-time reverse-transcription quantitative polymerase chain reaction confirmed that the responses of these genes to ZnO NPs were significantly different from their response to ZnSO4 exposure. ZnO NPs may affect genes related to inflammation and the immune system, resulting in yolk-sac edema and pericardia edema in embryonic/larval developmental stages. These results will assist in elucidating the mechanisms of toxicity of ZnO NPs during development of zebrafish.


Assuntos
Perfilação da Expressão Gênica , Nanopartículas/toxicidade , Peixe-Zebra/embriologia , Peixe-Zebra/genética , Óxido de Zinco/química , Óxido de Zinco/toxicidade , Animais , Embrião não Mamífero/citologia , Embrião não Mamífero/efeitos dos fármacos , Embrião não Mamífero/metabolismo , Larva/efeitos dos fármacos , Larva/genética , Transdução de Sinais/efeitos dos fármacos
10.
Environ Sci Technol ; 50(11): 6025-35, 2016 06 07.
Artigo em Inglês | MEDLINE | ID: mdl-27135705

RESUMO

To examine the deleterious effects of the water accommodated fraction (WAF) of crude oil, the growth curve, fecundity, and lifespan of the monogonont rotifer (Brachionus koreanus) were measured for 24 h in response to three different doses (0.2×, 0.4×, and 0.8×) of WAFs. A higher dose of WAFs significantly reduced the fecundity and lifespan. A rotifer 32K microarray chip showed that the Bk-CYP3045C1 gene had the highest expression. Of the 25 entire CYP genes, the Bk-CYP3045C1 gene showed a significant expression for different doses and times in response to WAFs and chemical components of WAFs (naphthalene and phenanthrene); also, glutathione S-transferase genes, ABC transporter, and other genes showed dose responses upon exposure to 80% WAF over time. Different doses of WAFs increased the oxidative stress with an induction of reactive oxygen species (ROS) and a depletion of glutathione (GSH). Exposure to WAFs did not show toxic effects on survivability in B. koreanus; however, toxicity to WAFs was shown when piperonyl butoxide, a potent inhibitor of cytochrome P450 (CYP) enzymes, was added. This toxicity was dose-dependent. After WAFs exposure, p-ERK was activated over time in response to WAFs, which suggests that WAFs can be activated by the p-ERK signaling pathway.


Assuntos
Poluentes Químicos da Água/toxicidade , Água/metabolismo , Animais , Glutationa Transferase/metabolismo , Espécies Reativas de Oxigênio/metabolismo , Rotíferos/efeitos dos fármacos
11.
Environ Toxicol Chem ; 35(6): 1449-57, 2016 06.
Artigo em Inglês | MEDLINE | ID: mdl-26496856

RESUMO

Chlorpyrifos is a widely used organophosphorus insecticide for controlling diverse insect pests of crops. In the monogonont rotifer Brachionus koreanus, population growth retardation with the inhibition of lifespan, fecundity, and individual body size of ovigerous females was shown over 10 d in response to chlorpyrifos exposure. At the molecular and biochemical levels, the rotifer B. koreanus defensome, composed of cytochrome P450 complements, heat shock protein 70, and antioxidant enzymatic systems (i.e., glutathione, glutathione peroxidase, glutathione reductase, and glutathione S-transferase), was significantly induced in response to different concentrations of chlorpyrifos. Thus, chlorpyrifos strongly induced a defensome system to mitigate the deleterious effects of chlorpyrifos at in vivo and in vitro levels as a trade-off in fitness costs. Environ Toxicol Chem 2016;35:1449-1457. © 2015 SETAC.


Assuntos
Antioxidantes/metabolismo , Clorpirifos/toxicidade , Sistema Enzimático do Citocromo P-450/metabolismo , Poluentes Ambientais/toxicidade , Estágios do Ciclo de Vida/efeitos dos fármacos , Rotíferos/efeitos dos fármacos , Sequência de Aminoácidos , Animais , Clorpirifos/metabolismo , Sistema Enzimático do Citocromo P-450/genética , Poluentes Ambientais/metabolismo , Feminino , Perfilação da Expressão Gênica , Glutationa/metabolismo , Glutationa Peroxidase/metabolismo , Glutationa Redutase/metabolismo , Glutationa Transferase/metabolismo , Rotíferos/genética , Rotíferos/crescimento & desenvolvimento , Rotíferos/metabolismo
12.
Biochem Biophys Res Commun ; 465(1): 12-8, 2015 Sep 11.
Artigo em Inglês | MEDLINE | ID: mdl-26206084

RESUMO

Fatty acid-binding proteins (FABPs) are involved in transporting hydrophobic fatty acids between various aqueous compartments of the cell by directly binding ligands inside their ß-barrel cavities. Here, we report the crystal structures of ligand-unbound pFABP4, linoleate-bound pFABP4, and palmitate-bound pFABP5, obtained from gentoo penguin (Pygoscelis papua), at a resolution of 2.1 Å, 2.2 Å, and 2.3 Å, respectively. The pFABP4 and pFABP5 proteins have a canonical ß-barrel structure with two short α-helices that form a cap region and fatty acid ligand binding sites in the hydrophobic cavity within the ß-barrel structure. Linoleate-bound pFABP4 and palmitate-bound pFABP5 possess different ligand-binding modes and a unique ligand-binding pocket due to several sequence dissimilarities (A76/L78, T30/M32, underlining indicates pFABP4 residues) between the two proteins. Structural comparison revealed significantly different conformational changes in the ß3-ß4 loop region (residues 57-62) as well as the flipped Phe60 residue of pFABP5 than that in pFABP4 (the corresponding residue is Phe58). A ligand-binding study using fluorophore displacement assays shows that pFABP4 has a relatively strong affinity for linoleate as compared to pFABP5. In contrast, pFABP5 exhibits higher affinity for palmitate than that for pFABP4. In conclusion, our high-resolution structures and ligand-binding studies provide useful insights into the ligand-binding preferences of pFABPs based on key protein-ligand interactions.


Assuntos
Proteínas Aviárias/química , Proteínas de Ligação a Ácido Graxo/química , Ácido Linoleico/química , Ácido Palmítico/química , Spheniscidae/metabolismo , Sequência de Aminoácidos , Naftalenossulfonato de Anilina , Animais , Proteínas Aviárias/genética , Proteínas Aviárias/metabolismo , Clonagem Molecular , Cristalografia por Raios X , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Ligação a Ácido Graxo/genética , Proteínas de Ligação a Ácido Graxo/metabolismo , Corantes Fluorescentes , Expressão Gênica , Ligantes , Modelos Moleculares , Dados de Sequência Molecular , Ligação Proteica , Isoformas de Proteínas/química , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Spheniscidae/genética
13.
Environ Sci Technol ; 47(23): 13804-12, 2013 Dec 03.
Artigo em Inglês | MEDLINE | ID: mdl-24191723

RESUMO

Cytochrome P450 (CYP) proteins are involved in the first line of detoxification mechanism against diverse polycyclic aromatic hydrocarbons (PAHs) including benzo[a]pyrene (B[a]P). In aquatic invertebrates, there is still a lack of knowledge on the CYP genes involved in the molecular response to B[a]P exposure due to limited gene information. In this study, we cloned the entire 25 CYP genes in the monogonont rotifer Brachionus koreanus with the aid of next generation sequencing (NGS) technologies and analyzed their transcript profiles with a real-time RT-PCR array to better understand B[a]P-triggered molecular response over different time courses. As a result, B[a]P exposure induced CYP2/3-involved detoxification mechanisms and defensome, including phase II detoxification and antioxidant systems with a modulation of the chaperone heat shock protein (hsp) expression but did not change expression of other CYP clans in B. koreanus . Therefore, we found that B[a]P induced a strong detoxification mechanism to overcome detrimental effects of B[a]P associated with B[a]P-induced growth retardation as a trade-off in fitness costs. Also, this approach revealed that the entire CYP profiling can be a way of providing a better understanding on the mode of action of B[a]P in B. koreanus with respect to molecular defense metabolism.


Assuntos
Benzo(a)pireno/toxicidade , Sistema Enzimático do Citocromo P-450/genética , Rotíferos/enzimologia , Rotíferos/genética , Animais , Antioxidantes/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Perfilação da Expressão Gênica , Regulação Enzimológica da Expressão Gênica/efeitos dos fármacos , Proteínas de Choque Térmico/genética , Proteínas de Choque Térmico/metabolismo , Desintoxicação Metabólica Fase II , Anotação de Sequência Molecular , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Rotíferos/efeitos dos fármacos , Rotíferos/crescimento & desenvolvimento , Terminologia como Assunto
14.
Aquat Toxicol ; 140-141: 58-67, 2013 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-23765029

RESUMO

To investigate effects of gamma ray irradiation in the hermaphroditic fish, Kryptolebias marmoratus larvae, we checked expression of p53, DNA repair, and heat shock protein genes with several antioxidant enzyme activities by quantitative real-time RT-PCR and biochemical methods in response to different doses of gamma radiation. As a result, the level of gamma radiation-induced DNA damage was initiated after 4Gy of radiation, and biochemical and molecular damage became substantial from 8Gy. In particular, several DNA repair mechanism-related genes were significantly modulated in the 6Gy gamma radiation-exposed fish larvae, suggesting that upregulation of such DNA repair genes was closely associated with cell survival after gamma irradiation. The mRNA expression of p53 and most hsps was also significantly upregulated at high doses of gamma radiation related to cellular damage. This finding indicates that gamma radiation can induce oxidative stress with associated antioxidant enzyme activities, and linked to modulation of the expression of DNA repair-related genes as one of the defense mechanisms against radiation damage. This study provides a better understanding of the molecular mode of action of defense mechanisms upon gamma radiation in fish larvae.


Assuntos
Ciprinodontiformes/fisiologia , Reparo do DNA , Raios gama , Regulação da Expressão Gênica/efeitos da radiação , Proteínas de Choque Térmico/genética , Oxirredutases/genética , Proteína Supressora de Tumor p53/genética , Animais , Reparo do DNA/genética , Reparo do DNA/efeitos da radiação , Ativação Enzimática/efeitos da radiação , Estresse Oxidativo/efeitos da radiação , Oxirredutases/metabolismo
15.
Comp Biochem Physiol C Toxicol Pharmacol ; 157(2): 172-82, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23178197

RESUMO

CYP1A is involved in the metabolism of diverse chemicals, including polycyclic aromatic hydrocarbons and alkylated-PAHs, as a first line of detoxification mechanism. First, we identified and characterized the CYP1A gene from the marine medaka, Oryzias melastigma. O. melastigma CYP1A (Om-CYP1A) showed a high similarity of motifs/domains compared to those of vertebrates in their amino acid sequences. To check whether the Om-CYP1A would be inducible, we tested two strong CYP1A inducers, ß-naphthoflavone (ß-NF) and benzo[α]pyrene (B[α]P), and observed concentration-dependent transient expression on transcripts of Om-CYP1A for 96 h over a wide range of concentrations. Om-CYP1A mRNA level was significantly increased in exposure to different concentrations of ß-NF and B[α]P, and its expression was highly transcribed within 12 h upon the exposure to low concentrations of both chemicals. Inducible transcript profiles revealed that Om-CYP1A would be associated with the toxicant metabolism via AhREs/DREs/XREs in its promoter region. To uncover the effects of the water-accommodated fraction (WAF) of crude oil on transcripts of Om-CYP1A, we measured mRNA expression of Om-CYP1A towards different concentrations of WAF for 24h. As a result, WAF exposure significantly increased Om-CYP1A transcripts at all concentrations as well as during time-course experiments for 96 h. In this paper, we demonstrated that WAF would trigger up-regulation of the CYP1A gene that would be associated with the initiation of the cellular defense systems. This finding provides a better understanding of the molecular mechanism of cellular protection particularly that involved in the WAF-mediated cellular response in O. melastigma.


Assuntos
Citocromo P-450 CYP1A1/genética , Proteínas de Peixes/genética , Oryzias/genética , Petróleo , Poluentes Químicos da Água/toxicidade , Sequência de Aminoácidos , Animais , Sequência de Bases , Benzo(a)pireno/metabolismo , Benzo(a)pireno/toxicidade , Biomarcadores/metabolismo , Citocromo P-450 CYP1A1/metabolismo , Relação Dose-Resposta a Droga , Proteínas de Peixes/metabolismo , Perfilação da Expressão Gênica , Regulação da Expressão Gênica no Desenvolvimento/efeitos dos fármacos , Regulação Enzimológica da Expressão Gênica/efeitos dos fármacos , Desintoxicação Metabólica Fase I , Dados de Sequência Molecular , Oryzias/crescimento & desenvolvimento , Oryzias/metabolismo , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Homologia de Sequência de Aminoácidos , Poluentes Químicos da Água/metabolismo , beta-Naftoflavona/metabolismo , beta-Naftoflavona/toxicidade
16.
Gene ; 505(1): 108-13, 2012 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-22677267

RESUMO

Information of genome structure with its size variation may provide important clues for evolutionary processes at lower taxon level in eukaryotes. Here, we analyzed the compact genome structure of the monogonont rotifer, Brachionus koreanus in the light of transphyletic genome comparison and economic genome usage. To confirm the genome compactness of B. koreanus, we compared the genomic structure of several selected genes with those of human and pufferfish. For example, one of the large genes, DNA-dependent protein kinase (DNA-PK) with dimeric protein Ku70 and Ku80, showed high similarity, even though genomic DNA lengths were quite different. The replication protein As (RPAs) as a heterotrimeric protein also showed a compact genomic structure including all the essential domains and motifs in B. koreanus. Regarding transmembrane protein-containing genes, the B. koreanus P-glycoprotein (P-gp) showed exactly the same topology of the TM domain compared to those of human and pufferfish, even though it had a compact genome structure. In addition, the gene structure of an inducible repair enzyme O(6)-methylguanine DNA methyltransferase (O(6)-MGMT) of B. koreanus showed the highest compactness among the genes tested. The objective of this report is to evaluate the potential for whole genome sequencing and functional genomic research using the monogonont rotifer B. koreanus as a non-model organism that plays important roles in aquatic food-webs. Subsequently, we discussed possible reasons for compact genome structures as well as small and fewer introns from several perspectives. We conclude that the small size genome of B. koreanus would make this species potentially useful for comparative genome structure analysis of non-model species through whole genome sequencing and genetic mapping.


Assuntos
Evolução Molecular , Genes de Helmintos/fisiologia , Proteínas de Helminto/genética , Proteínas de Helminto/metabolismo , Rotíferos/fisiologia , Motivos de Aminoácidos , Animais , Humanos , Tetraodontiformes/fisiologia
17.
Comp Biochem Physiol C Toxicol Pharmacol ; 155(2): 344-51, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22037546

RESUMO

To identify and evaluate potentially useful biomarkers for oxidative stress as early warning indices in the polychaete, Perinereis nuntia, we exposed P. nuntia to copper (Cu) and measured several biomarker enzymes (glutathione S-transferase; GST, glutathione peroxidase; GPx, Metallothionein-like protein; MTLPs, and catalase; CAT) and genes (Pn-GSTs, Pn-CAT, and Pn-MT) with a cellular oxidative index, reactive oxygen species (ROS) level. Accumulated Cu concentrations in P. nuntia increased in a time-dependent manner. Intracellular ROS reached high levels 6h after exposure in P. nuntia with an increase of GST activity and glutathione (GSH) content. Particularly, GSH in polychaetes showed a positive correlation with Cu contents accumulated in P. nuntia. Messenger RNA expressions of GST sigma and GST omega showed relatively high expressions at 50 µg/L of Cu exposure, even though the moderate increase of rest of GST isoforms was also observed. Also regarding long-term exposure, we reared P. nuntia in sediments for 15 days, and found that there was an obvious increase of Pn-GSTs, Pn-CAT, and Pn-MT genes with elevated concentrations of Cu and Cd in polychaete body, compared to initial levels, suggesting that P. nuntia in sediment was affected by metals as well as by other organic pollutants to induce oxidative stress genes and enzymes. These findings suggest that oxidative stress is a potential modulator of defense system of P. nuntia. Several potential biomarker genes are available as early warning signals for environmental biomonitoring.


Assuntos
Antioxidantes/metabolismo , Cobre/toxicidade , Regulação da Expressão Gênica/efeitos dos fármacos , Estresse Oxidativo , Poliquetos/metabolismo , Animais , Catalase/genética , Catalase/metabolismo , Cobre/metabolismo , Monitoramento Ambiental/métodos , Poluentes Ambientais/metabolismo , Poluentes Ambientais/toxicidade , Glutationa/metabolismo , Glutationa Transferase/genética , Glutationa Transferase/metabolismo , Metalotioneína/genética , Metalotioneína/metabolismo , Poliquetos/genética , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Espécies Reativas de Oxigênio/metabolismo , Reação em Cadeia da Polimerase Via Transcriptase Reversa
18.
Environ Res ; 112: 48-57, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22018924

RESUMO

The polychaete, Perinereis nuntia, has been used as an indicator species to assess the environmental condition of benthic communities in coastal marine environments. Recently, high-throughput sequencing technology has been proven to be a useful method for analyzing expressed sequence tags (ESTs) in non-model species. Thus, we have obtained extensive cDNA information by the pyrosequencing method, to utilize the polychaete species as a test organism for sediment quality monitoring studies. From the total RNA of P. nuntia, cDNA was reversely synthesized and randomly sequenced using a GS-FLX sequencer. In the assembly stage 1, 40,379 transcripts (13,666 contigs and 26,713 singletons) were acquired and showed 47% hitting rate compared with the GenBank non-redundant (NR) amino acid sequence database using BLASTX. After the stage-2 assembly, 21,657 transcripts were identified and showed 28% hitting rate. Finally, we obtained 6 064 unigenes that corresponded to the GenBank NR amino acid sequence database using BLASTX. Of the transcripts obtained in this species, we found a number of stress- and cell defense-related genes (e.g. heat shock protein family, antioxidant-related genes, cytochrome P450 genes) that are potentially useful for sediment monitoring at the molecular level, indicating that the pyrosequencing method is an effective approach to uncover gene families of potential biomarker genes simultaneously, and thus make transcriptomic studies possible. To confirm the usefulness of those potential biomarker genes, we analyzed the comparative profiling of P. nuntia mRNA transcripts between the samples collected from the polychaete aquaculture farm and the southern coast field of South Korea. In this paper, we summarize the expressed cDNA information of P. nuntia and discussed its potential use in environmental genomics and ecotoxicological studies for uncovering the potential molecular mechanisms of environmental stresses and chemical toxicity to the indicator species, P. nuntia in marine sediments.


Assuntos
Ecotoxicologia , Monitoramento Ambiental , Etiquetas de Sequências Expressas , Poliquetos/efeitos dos fármacos , Poliquetos/genética , Poluentes Químicos da Água/toxicidade , Animais , DNA Complementar/genética , Bases de Dados Genéticas , Biblioteca Gênica , Marcadores Genéticos , Sedimentos Geológicos/química , Ensaios de Triagem em Larga Escala , RNA/genética
19.
Artigo em Inglês | MEDLINE | ID: mdl-21612991

RESUMO

The self-fertilizing hermaphroditic fish, Kryptolebias marmoratus is considered a suitable model species in the fields of eco-biology, developmental biology, endocrinology, environmental genomics, aquatic toxicology, and molecular carcinogenesis. However, more extensive gene information is still needed to improve our understanding of the biology of this fish with respect to toxicological responses. We performed a transcriptomic study in this species using pyrosequencing. Liver and ovary mRNA was reverse synthesized into cDNA and randomly sequenced by a Roche 454, GS-20 sequencer. After quality assessment, the assembled expressed sequence tag (EST) translations were compared with the GenBank non-redundant (nr) amino acid sequence database using BLASTX. In the assembly stage 1, both 59,732 transcripts in liver and 103,526 transcripts in ovary were obtained. To identify the differently expressed genes in the ovary and liver tissues, all transcripts were sorted out with an expected value threshold of 1.00E-05. Consequently, 7168 contigs of ovary ESTs and 3855 contigs of liver ESTs were not overlapped for expression in both tissues, whereas 3763 contigs were commonly found in both tissues. Subsequently, we described the most highly represented genes in the liver and ovary of K. marmoratus. Isoforms of cytochrome P450 (CYP) and receptor-related genes showed tissue-preferential expressed patterns. To identify the potential biomarkers in this species, ovary and liver ESTs were assembled and annotated with the nr amino acid sequence database using BLASTX. Then, 35,471 transcripts were obtained, and 9130 transcripts were hit (26%) at the assembly stage 2. Finally, we identified a number of stress-, antioxidant defense-, and DNA repair-related genes as potential molecular biomarkers for toxicological response using this species. We discuss the potential use for these markers in K. marmoratus for environmental genomics and eco-toxicological studies to uncover mechanisms of environmental stresses and chemical toxicities to K. marmoratus.


Assuntos
Etiquetas de Sequências Expressas , Organismos Hermafroditas/genética , Peixes Listrados/anatomia & histologia , Peixes Listrados/genética , Fígado/fisiologia , Ovário/fisiologia , Animais , Biomarcadores , Bases de Dados Genéticas , Feminino , Humanos , Peixes Listrados/metabolismo , Poluentes Químicos da Água
20.
Mar Pollut Bull ; 63(5-12): 277-86, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21565362

RESUMO

To evaluate the superoxide dismutase (SOD) genes as a potential indicator of environmental stress, we cloned and sequenced the full-length cDNA of a Cu/Zn-SOD and Mn-SOD genes from the marine polychaete, Neanthes succinea. Ns-Cu/Zn- and Mn-SOD expression was measured using quantitative real-time RT-PCR in response to the oxidative stress induced by copper in the form of CuCl2. Ns-Cu/Zn-SOD expression increased in a dose dependent manner but the increase of Mn-SOD expression was evident only at a high concentration of copper. Particularly, Ns-Mn-SOD dramatically increased in the 72 µg/L CuCl2-exposed groups, indicating that both Ns-SOD genes were induced by copper exposure. These results suggest that Ns-Cu/Zn- and Ns-Mn-SOD would play important roles in the detoxification of cellular oxidative stresses in the polychaete, N. succinea. Furthermore, as part of field work, the marine polychaete, N. succineaCu/Zn-SOD mRNA collected from the polluted area was accordingly upregulated in expression but not for NS-Mn-SOD.


Assuntos
Cobre/toxicidade , Poliquetos/efeitos dos fármacos , Superóxido Dismutase/genética , Poluentes Químicos da Água/toxicidade , Sequência de Aminoácidos , Animais , Expressão Gênica/efeitos dos fármacos , Dados de Sequência Molecular , Estresse Oxidativo , Poliquetos/genética , Poliquetos/metabolismo , RNA Mensageiro/metabolismo , Superóxido Dismutase/metabolismo
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