Two classes of intrahepatic cholangiocarcinoma defined by relative abundance of mutations and copy number alterations.

Intrahepatic cholangiocarcinoma (ICC) is a biliary tree-origin epithelial malignancy in liver with unfavorable clinical outcomes. Systematic genome analyses may advance our understanding of ICC pathogenesis also improving current diagnostic and therapeutic modalities. In this study, we analyzed 17 ICC tumor-vs-matched normal pairs using either whole-exome (n = 7), transcriptome sequencing (n = 7) or both platforms (n = 3). For somatic mutations, we identified recurrent mutations of previously reported genes such as KRAS, TP53, APC as well as epigenetic regulators and those of TGFß signaling pathway. According to the abundance of somatic mutations and DNA copy number alterations (CNA), ten ICC exome cases were distinguished into two classes as those primarily driven by either somatic mutations (M class) or CNAs (C class). Compared to M class ICCs (92-147 somatic mutations; n = 5) with a relative deficit of CNAs, C class ICCs (54-84 mutations; n = 5) harbor recurrent focal CNAs including deletions involving CDKN2A, ROBO1, ROBO2, RUNX3, and SMAD4. We also show that transcriptome sequencing can be used for expression-based ICC categorization but the somatic mutation calling from the transcriptome can be heavily influenced by the gene expression level and potentially, by posttranscriptional modification such as nonsense mediated decay. Along with a substantial level of mutational heterogeneity of ICC genomes, our study reveals previously unrecognized two ICC classes defined by relative abundance of somatic mutations over CNAs or vice versa, which should be considered in the selection of genotyping platforms and sensitive screening of targets for ICC therapeutics.

The effects of elbow joint angle changes on elbow flexor and extensor muscle strength and activation.

[Purpose] This research investigated the relationship between elbow joint angle and elbow flexor and extensor strength and activation, taking into consideration the length-tension tension curve of the muscle. [Subjects] There were 30 research subjects in total, 15 male and 15 female college students from Busan S University who had no functional disabilities that might affect measurement of muscle strength and muscle activation, and none had they experienced any damage in their upper extremities or hands. [Methods] The elbow joint angles were positioned at angles of 56°, 70° and 84°, and then muscle strength and activation were compared. Repeated measures ANOVA was used for statistical analysis, and the paired t-test was used to identify the difference between each angle. We used the SPSS for windows (ver. 21.0) statistical software and a significance level of α=0.05. [Results] The results showed that muscle strength and activation of the biceps was highest when the joint was placed at 56°. On the other hand, for the triceps, the result was highest when the joint angle was placed at 84°. [Conclusion] The tests confirmed that muscle strength and activation were highest at the joint angle at which the muscle was stretched to 20% more than the resting position in concentric contraction.

Up-regulation of the BTG2 gene in TPA- or RA-treated HL-60 cell lines.

The key pathogenesis of leukemia is the defection of the differentiation processes of hematopoietic stem cells. There are five APRO (anti-proliferative) genes, BTG1, BTG2, BTG3, TOB and TOB2, and it was reported that certain APRO genes are associated with cell differentiation. However, it is still unknown whether APRO genes are related with the differentiation process of blood cells. In this study, we investigated the expression of APRO genes in 12-O-tetra-decanoylphorbol-13-acetate (TPA) or retinoic acid (RA)-treated HL-60 cell lines. Our data show that the expression of the BTG2 gene was increased in 32 nM TPA-treated and 1 microM RA-treated HL-60 cells, but the expression of the BTG1 and BTG3 genes was not increased. The expression of BTG2 in TPA- or RA-treated HL-60 cells was also increased even in the presence of cyclohexamide, which is an inhibitor of translation, implying that the increased expression of BTG2 mRNA did not require the new synthesis of another protein. Notably, the up-regulation of BTG2 in TPA- or RA-treated HL-60 cells was observed prior to the increased expression of p21. Our data show that PKC pathways are uninvolved with the up-regulation of BTG2 in TPA- or RA-treated HL-60 cells. Thus, the up-regulation of BTG2 genes may be involved in the differentiation process of HL-60 cells after TPA or RA treatment. Furthermore, this event occurred prior to p21 expression, implying that the BTG2 expression plays a role at a very early point during the differentiation processes of hematopoietic cells.