Characteristic of complete mitochondrial genome and phylogenetic status of a muskrat, Ondatra zibethicus (Rodentia: Cricetidae) in South Korea.

The complete mitochondrial genome of Muskrat, Ondatra zibethicus (Rodentia: Cricetidae) in Korea was sequenced for the first time using the next-generation sequencing method to understand its evolutionary relationship and to be helpful to establish a management plan. This mitogenome was 16,350 base pairs in length, containing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region. Its overall A, C, G, and T contents were 32.0%, 26.9%, 12.6%, and 28.5%, respectively. A + T content (63.7%) was higher than G + C content (36.3%). We made the phylogenetic tree of muskrat and other 12 species of order Rodentia distributed in Korea.

Complete mitochondrial genome of Gymnocanthus intermedius and Gymnocanthus herzensteini (Scorpaeniformes: Cottidae).

Here, we report the complete mitochondrial genomes of the Sculpins species Gymnocanthus intermedius and Gymnocanthus herzensteini. The mitogenomes were determined to be 16,639 bp for G. intermedius and 16,691 bp for G. herzensteini. The mitogenomes comprised 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a non-coding region. We then used the mitogenome data to construct a phylogenetic tree for these two species and an additional three species within the order Scorpaeniformes.

Sexual dimorphism of craniomandibular size in the Eurasian otter, Lutra lutra, from South Korea.

Sexual size dimorphism of craniomandibular morphology of the Eurasian otter Lutra lutra in South Korea was analyzed using linear measurements. In total, 32 skulls (18 males and 14 females) and 22 linear measurements (16 cranial and 6 mandibular measurements) were used. Our results showed statistically significant sexual dimorphism between male and female skull size. Multivariate analyses using the cranial and mandibular traits showed significant differences between the sexes, respectively. The most dimorphic trait was ectorbital breadth (EOB), and the EOB of the male was approximately 10% greater than that of the female. This type of sexual size dimorphism, in which males are generally larger than females, is a general pattern shown in family Mustelidae. Several researchers have suggested various hypotheses about the factors causing sexual size dimorphism, i.e., 'resource partitioning model' and 'sex-specific pressure model'. Our results are consistent with these hypotheses, and we suggest that these factors would have affected the sexual size dimorphism of the Eurasian otter in Korea.

Complete mitochondrial genome of Cyllorhynchites ursulus (Coleoptera: Rhynchitidae).

The complete mitochondrial genome of Cylloryhunchites ursulus was sequenced for the first time from its whole body using the next-generation sequencing method. This mitogenome was 14,508 base pairs in length, containing 13 protein-coding genes, 20 transfer RNA genes, and two ribosomal RNA genes. Its overall A, C, G, and T contents were 37.8, 17.8, 11.1, and 33.4%, respectively. Its A + T content (71.2%) was higher than G + C content. The phylogenetic result showed that although C. ursulus is a species of family Rhynchitidae, its phylogenetic position is closely related to family Attlabidae.

Complete mitochondrial genome of Lycodes tanakae (Perciformes: Zoarcidae).

The complete mitochondrial genome of Lycodes tanakae was sequenced for the first time from its muscle tissue using the next-generation sequencing method. Its mitochondrial genome was 16,594 base pairs in length, containing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region. Its overall A, C, G, and T contents were 25.6%, 30.6%, 18.7%, and 25.2%, respectively. Its, A + T content (50.8%) was slightly higher than its G + C content (49.2%). A phylogenetic tree was built using 10 belonging to the order Perciformes and two species belonging to the order Scorpaeniformes.

Complete mitochondrial genome of Hemilepidotus gilberti (Scorpaeniformes: Cottidae).

The complete mitochondrial genome of gilbert's irish lord (Hemilepidotus gilberti), a fish belonging to family Cottidae, was sequenced for the first time. This complete mitochondrial genome was 16,907 nucleotides in length, consisting of 38 mitochondrial genes (13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region). The order of these genes was similar to that of other teleosts. The overall A, C, G, and T nucleotide contents in mitogenome were 26.8%, 30.4%, 17.0%, and 25.8%, respectively. The A + T content (52.6%) was higher than the G + C content (47.4%). NJ phylogenetic analysis was performed for 10 related species within the family of Cottidae along with, two fish species belonging to another family (Sebastidae).

Cranial morphological homogeneity in two subspecies of water deer in China and Korea.

The water deer (Hydropotes inermis) has conventionally been classified into two subspecies according to geographic distribution and pelage color pattern: H. i. inermis from China and H. i. argyropus from Korea. However, the results of a recent molecular study have called this into question. To further reappraise this classification, we examined morphological variation in craniodental measurements of these 2 subspecies. Results of univariate and multivariate analyses demonstrated that these 2 subspecies are not well-differentiated, suggesting that individuals of the 2 populations share common morphological traits. Despite the distribution of the subspecies at different latitudes, no clear morphocline was detected, suggesting that Bergmann's rule does not apply in this case. Discriminant analysis indicated that the characteristics of individuals are shared by both populations, suggesting that not all individuals can be assigned to their original population. Results of principal component analysis showed that the two populations shared more than 75% of individuals, congruent with the "75% rule" of subspecies classification. In both the neighbor-joining and unweighted pair group methods with arithmetic mean cluster analyses, specimens of H. i. argyropus and H. i. inermis were highly mixed within the cladograms. These results suggest that the overall morphological variation in the 2 subspecies overlaps considerably and that there is no coherent craniofacial difference between the 2 groups. The present findings combined with prior observations from molecular biogeography point out that the taxonomic division of water deer into 2 subspecies should be revisited.

Sexual dimorphism of craniomandibular size in the Korean water deer, Hydropotes inermis argyropus.

Sexual dimorphism in the craniomandibular traits in the Korean water deer Hydropotes inermis argyropus was examined for the first time. Multivariate analyses using only cranial traits showed a clear separation between sexes. However, the separation was not obvious in the discriminant analysis using only mandibular traits. The most clearly dimorphic trait was in the incisive bone breadth, which was about 12% larger in males. The incisive bone width reflects the characteristically large canines in male. In contrast to this, most of the cranial measurements, except for the incisive breadth, were larger in female, indicating a larger overall skull size. Given that males are generally larger than females, this sexually dimorphic pattern is unique among mammals. We propose that factors, for example, a unique parental care, have influenced the larger skull size in the females of this species.

Genetic status of Asiatic black bear (Ursus thibetanus) reintroduced into South Korea based on mitochondrial DNA and microsatellite loci analysis.

The Asiatic black bear is one of the most endangered mammals in South Korea owing to population declines resulting from human exploitation and habitat fragmentation. To restore the black bear population in South Korea, 27 bear cubs from North Korea and Russian Far East (Primorsky Krai) were imported and released into Jirisan National Park, a reservoir of the largest wild population in South Korea, in 2004. To monitor the success of this reintroduction, the genetic diversity and population structure of the reintroduced black bears were measured using both mitochondrial and nuclear DNA markers. Mitochondrial D-loop region DNA sequences (615 bp) of 43 Japanese black bears from previous study and 14 Southeast Asian black bears in this study were employed to obtain phylogenetic inference of the reintroduced black bears. The mitochondrial phylogeny indicated Asiatic black bear populations from Russian Far East and North Korea form a single evolutionary unit distinct from populations from Japan and Southeast Asia. Mean expected heterozygosity (H(E)) across 16 microsatellite loci was 0.648 for Russian and 0.676 for North Korean populations. There was a moderate but significant level of microsatellite differentiation (F(ST) = 0.063) between black bears from the 2 source areas. In addition, genetic evidences revealed that 2 populations are represented as diverging groups, with lingering genetic admixture among individuals of 2 source populations. Relatedness analysis based on genetic markers indicated several discrepancies with the pedigree records. Implication of the phylogenetic and genetic evidences on long-term management of Asiatic black bears in South Korea is discussed.