Photoelectron spectra and biological activity of cinnamic acid derivatives revisited.

The electronic structures of several derivatives of cinnamic acid have been studied by UV photoelectron spectroscopy (UPS) and Green's function quantum chemical calculations. The spectra reveal the presence of dimers in the gas phase for p-coumaric and ferulic acids. The electronic structure analysis has been related to the biological properties of these compounds through the analysis of some structure-activity relationships (SAR).

Photoelectron spectroscopy of non-steroidal anti-inflammatory drugs.

The electronic structures of eight non-steroidal anti-inflammatory drugs (NSAIDs) had been studied by UV photoelectron spectroscopy (UPS) and high-level Green's function (GF) calculations. Our UPS data show that the electronic structure influences the measured biological activity of NSAID, but that it is not the dominating factor. The role of electronic structure needs to be considered in conjunction with other factors like steric properties of the COX active site and orientation of relevant residues in the same site.

Calibration of mass selective detector in non-target analysis of volatile organic compounds in the air.

Volatile organic compounds (VOCs) play an important role in the chemistry of the atmosphere and in biogeochemistry. They contribute to the oxidative capacity of the atmosphere, particle and air pollutants, as well as to the production of greenhouse gases (for instance ozone). Among analytical techniques for their determination in the atmosphere gas chromatography coupled with mass spectrometry (GC-MS) offers several advantages. However, for an accurate quantification calibration with standard substances is necessary. A quantitative structure-property relationship (QSPR) model for the prediction of MS response factors was developed on basis of our experimental measurements for the quantification of ozone precursors present in the atmosphere. A linear correlation between chemical structures and response factors was established by using a 7-parameter MLR model. The average error in the prediction of response factors was calculated by cross-validation procedure and was below 20%, which is sufficient for the determination of VOCs in the air. The proposed procedure is time consuming so it is more suited for the quantification of tentatively identified organic compounds during the reprocessing of MS chromatograms in cases when the original sample is no longer available.

Modeling of the Mass Spectrometric Response Factors in Non-target Analysis.

Experimental MS response factors were measured for 36 different saturated and unsaturated volatile organic compounds (VOC) containing carbon, hydrogen and halogen atoms. Chemical structure was encoded using various molecular descriptors. A quantitative structure-property relationship model was established using the multiple linear regression models. The cross-validation ability of the created model was estimated by leave-one-out cross-validation procedure. Error in the cross-validation of response factors was calculated by cross-validation procedure and was 15%, which is sufficient for the determination of VOCs in the air. The proposed procedure can be used for simultaneous qualitative and quantitative determination of volatile organic compounds in the atmosphere.

Electronic structure and stability of benzotriazoles.

The electronic structures and relative stabilities of N-substituted benzotriazoles (BtR) have been studied by UV photoelectron spectroscopy (UPS) and high-level ab initio methods. We show that the UPS spectrum of 1H-benzotriazole corresponds to a mixture of tautomers. The N-substituent effects in benzotriazoles were shown to depend on the mode of attachment of the substituent to the Bt residue. We have estimated the conjugation effects between benzene and triazole rings in N-substituted benzotriazoles by using isodesmic reactions and high-level composite ab initio methods. The 2H-benzotriazoles (Bt2R) appear to be stabilized upon ring conjugation while on the other hand the 1H-benzotriazoles (Bt1R) are destabilized. The electronic structure of benzotriazoles can be related to photocycloaddition reactions and to regioselectivity exhibited during nitration.

The gas-phase interactions of TEMPO radicals with Fe+ ions.

The gas-phase ligation of the 2,2,6,6-tetramethylpiperidyl-1-oxide (TEMPO) radical (1) and its 4-hydroxy derivative (2) with Fe+ ions in a 3 T Fourier transform ion cyclotron resonance (FTICR) mass spectrometer was investigated. Triple ligation may occur: the first ligation produces a transient species prone to either charge exchange or a stable second ligation; the third ligand adds slowly, with fragmentation. 1 and 2 differ in that 1 binds exclusively at the nitroxyl oxygen while 2 also binds at the OH site after the loss of a H-radical. Calculations combined with steric considerations support such a mechanism for 2. The site and the mechanism of the important side reaction of 1 that involves OH addition from a water impurity to yield an FeR2 + species remain unexplained.

He I photoelectron spectra and gas-phase electronic structures of end-functionalized [3]- and [5]-ladderanes.

[3]- and [5]-ladderanes obtained by way of template-controlled syntheses conducted in the organic solid state have been characterized via He I photoelectron (PE) spectroscopy. The results provide a first correlation with X-ray crystallographic structure data and establish the reliability of quantum chemical DFT (B3LYP/6-31G*) and ab initio HF calculations in predicting geometrical and electronic structures of molecular ladder frameworks.

Atmospheric particulate matter and ozone under heat-wave conditions: do they cause an increase of mortality in Croatia?

In August 2003 Croatia experienced a heat-wave period during which elevated concentrations of particulate matter (PM10) and ozone in ambient air were measured. By applying the model of Stedman and Rooney et al., it was shown that a significant part of excess mortality during this period can be attributed to PM10 and ozone in ambient air.

Gas-phase ligation of Fe+ and Cu+ ions with some flavonoids.

It was assumed that gas-phase ligation of metal monocations by flavonoids might provide some insight on the intrinsic antioxidant activity of the latter. Thus, the ligation of Fe+ and Cu+ ions by apigenin (1), luteolin (2), kaempferol (3), quercetin (4), myricetin (5), and naringenin (6) was investigated in the gas phase in a Fourier transform mass spectrometer (FTMS). Both of the metal ions, which were produced by laser desorption ionization (LDI), bind consecutively to two neutral flavonoid molecules either with or without the simultaneous loss of some part (H, CO, H2O) of the latter. The flavonoids are present in the instrument at steady concentrations. The formation of flavonoid positive ions by charge exchange is also a common observation but is accompanied, in some cases, by a loss of H, CO, or H2O fragments. The reaction paths and observed fragmentations are presented. The results are supported by DFT B3LYP calculations that indicate a preference for metal ion attack at C-ring and not at the B-ring site considered to be mainly responsible for flavonoid antioxidant activity.

Gas phase H/D exchange of sodiated amino acids: why do we see zwitterions?

The gas-phase interaction of sodiated amino acids and sodiated amino acid methyl esters with various deuterium donors is investigated by combining results of H/D exchange reactions with those from density functional theory and molecular dynamics calculations. Discrepancy between experimentally and theoretically obtained structures for sodium cationized amino acids is explained by deuterium donor caused perturbation of the most stable amino acid conformation. Detailed study of H/D exchange mechanism on sodiated amino acids shows that the H/D exchange reaction is preceded by a multistep quasi-isoenergetic transition (perturbation) from a charge solvated to zwitterionic structure in the amino acid. Although the computation refers to the system AlaNa(+) and D(2)O, these mechanisms apply to all amino acids, except those where a functional side-chain group takes part in the perturbation process. The suggested perturbation mechanism applies also for other deuterium donors such as CD(3)OD or even ND(3) and indicates that a single water molecule suffices to convert the sodiated amino acid from charge solvated to zwitterionic form.

Gas-phase structure of protonated histidine and histidine methyl ester: combined experimental mass spectrometry and theoretical ab initio study.

Gas-phase H/D exchange experiments with CD3OD and D2O and quantum chemical ab initio G3(MP2) calculations were carried out on protonated histidine and protonated histidine methyl ester in order to elucidate their bonding and structure. The H/D exchange experiments show that both ions have three equivalent fast hydrogens and one appreciably slower exchangeable hydrogen assigned to the protonated amino group participating in a strong intramolecular hydrogen bond (IHB) with the nearest N(sp2) nitrogen of the imidazole fragment and to the distal ring NH-group, respectively. It is taken for granted that the proton exchange in the IHB is much faster than the H/D exchange. Unlike in other protonated amino acids (glycine, proline, phenylalanine, tyrosine, and tryptophan) studied earlier, the exchange rate of the carboxyl group in protonated histidine is slower than that of the amino group. The most stable conformers and the enthalpies of neutral and protonated histidine and its methyl ester are calculated at the G3(MP2) level of theory. It is shown that strong intramolecular hydrogen bonding between the amino group and the imidazole ring nitrogen sites is responsible for the stability and specific properties of the protonated histidine. It is found that the proton fluctuates between the amino and imidazole groups in the protonated form across an almost vanishing barrier. Proton affinity (PA) of histidine calculated by the G3(MP2) method is 233.2 and 232.4 kcal mol(-1) for protonation at the imidazole ring and at the amino group nitrogens, respectively, which is about 3-5 kcal mol(-1) lower than the reported experimental value.

Kinetic study of flavonoid reactions with stable radicals.

The antiradical activities of some flavonols (kaempferol, quercetin, robinetin, quercetagetin, and myricetin), flavones (apigenin, baicalein, and luteolin), flavanones (naringenin and dihydroquercetin), and flavanols [(+)-catechin and (-)-epicatechin] were determined by measuring the reaction kinetics with 2,2-diphenyl-1-picrylhydrazyl (DPPH) and alpha,gamma-bisdiphenylene-beta-phenylallyl (BDPA) radicals. The reactions, which follow the mixed second-order rate law, were investigated under pseudo-first-order conditions by use of a large excess of flavonoids, and their stoichiometry was determined by spectrophotometric titration. The results confirm stoichiometric factors of 1, 2, and 3 for flavonoids with one, two, and three hydroxyl groups in the B-ring, respectively, excluding kaempferol, which, despite a single OH group in the B-ring, has a factor of 2, which is explained by the 3-OH group supporting the reaction with free radicals. Structure-activity considerations indicate for the present series of flavonoids the importance of multiple OH substitutions and conjugation. The logarithms of reaction rate constants with the OH, DPPH, and BDPA radicals correlate well with the reduction potential of the flavonoids.

Kinetics of gas-phase hydrogen/deuterium exchange and gas-phase structure of protonated phenylalanine, proline, tyrosine and tryptophan.

Site-specific rate constants for the gas-phase hydrogen/deuterium (H/D) exchange of four, three, five and five hydrogen atoms in protonated phenylalanine (Phe), proline (Pro), tyrosine (Tyr) and tryptophan (Trp), respectively, were determined from matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry (MALDI-FTICRMS) experiments with D(2)O, D(2)S, and CH(3)OD as deuterating agents. No H/D exchange was observed with D(2)S. For exchange with both CD(3)OD and D(2)O, which is about ten times slower in the latter, results indicate for all compounds protonation of the alpha-amino group in agreement with theoretical results. Also, with both reagents, all compounds exchange at the COOH site more than ten times faster than at the protonation site, with OH and NH sites of Tyr and Trp, respectively, exchanging slowest. The observation of H/D exchange despite the high differences in proton affinities between the amino acids and deuterating agent exceeding 200 kJ mol(-1) is in agreement with lowering of the barrier for proton transfer through hydrogen bonding proposed by Lebrilla and coworkers.

Gas-phase ligation of Cr+ and Fe+ with 4,9-diazapyrene.

The ligation of Cr+ and Fe+ with 4,9-diazapyrene (DAP) within a Fourier transform mass spectrometer was studied and compared with previous results for the ligands pyrene (Py) and 9-azaphenanthrene (Ap). The results confirm that Fe+, which reacts more slowly but in the same way as Cr+ to bind two Py ligands, behaves quite differently with the nitrogen heterocycles DAP and Ap: it reacts rapidly and it binds three and four of them, respectively.

Nitrogen lone pair interactions in organic molecules: a photoelectron spectroscopic study.

The electronic structure of several cyclic, saturated and unsaturated amines and imines has been investigated by UV photoelectron spectroscopy (UPS). The analysis of spectra has been performed with DFT and OVGF calculations and comparison with the UPS spectra of related compounds. The extent and type of nitrogen lone pair interactions is discussed because nitrogen lone pairs are the most important functional groups present in these molecules. The magnitude of interactions was found to depend on the spatial orientation and rigidity of mutual positions of the lone pairs, rather than on their spatial distance.