Impact of the Protein Environment on Two-Photon Absorption Cross-Sections of the GFP Chromophore Anion Resolved at the XMCQDPT2 Level of Theory.

The search for fluorescent proteins with large two-photon absorption (TPA) cross-sections and improved brightness is required for their efficient use in bioimaging. Here, we explored the impact of a single-point mutation close to the anionic form of the GFP chromophore on its TPA activity. We considered the lowest-energy transition of EGFP and its modification EGFP T203I. We focused on a methodology for obtaining reliable TPA cross-sections for mutated proteins, based on conformational sampling using molecular dynamics simulations and a high-level XMCQDPT2-based QM/MM approach. We also studied the numerical convergence of the sum-over-states formalism and provide direct evidence for the applicability of the two-level model for calculating TPA cross-sections in EGFP. The calculated values were found to be very sensitive to changes in the permanent dipole moments between the ground and excited states and highly tunable by internal electric field of the protein environment. In the case of the GFP chromophore anion, even a single hydrogen bond was shown to be capable of drastically increasing the TPA cross-section. Such high tunability of the nonlinear photophysical properties of the chromophore anions can be used for the rational design of brighter fluorescent proteins for bioimaging using two-photon laser scanning microscopy.

Liquid-microjet photoelectron spectroscopy of the green fluorescent protein chromophore.

Green fluorescent protein (GFP), the most widely used fluorescent protein for in vivo monitoring of biological processes, is known to undergo photooxidation reactions. However, the most fundamental property underpinning photooxidation, the electron detachment energy, has only been measured for the deprotonated GFP chromophore in the gas phase. Here, we use multiphoton ultraviolet photoelectron spectroscopy in a liquid-microjet and high-level quantum chemistry calculations to determine the electron detachment energy of the GFP chromophore in aqueous solution. The aqueous environment is found to raise the detachment energy by around 4 eV compared to the gas phase, similar to calculations of the chromophore in its native protein environment. In most cases, electron detachment is found to occur resonantly through electronically excited states of the chromophore, highlighting their importance in photo-induced electron transfer processes in the condensed phase. Our results suggest that the photooxidation properties of the GFP chromophore in an aqueous environment will be similar to those in the protein.

Stable axially symmetric atomic impurity in an fcc solid-Ba in rare gases.

Closed-shell metal atoms in rare gas solids tend to occupy highly symmetric polyhedral crystal sites, as follows from the generic triplet Jahn-Teller splitting of the S → P excitation bands and complies with the isotropic nature of the dispersion forces. Atypical 2 + 1 Jahn-Teller splitting inherent to axially symmetric sites observed recently for Ba atoms has been therefore interpreted as the defect accommodation. By modeling the structure, stability, and spectra of the Ba atom in the face-centered cubic rare gas crystals, we identify thermodynamically stable crystal site of axial C3v symmetry that explains experimental observations. We also demonstrate the dramatic effect of the interaction anisotropy on the trapping site structure and stability for an excited P-state atom. Our results provide strong evidence for stable axially symmetric accommodation of isotropic impurity in a close-packed lattice.

Ab initio interaction potentials of the Ba, Ba+ complexes with Ar, Kr, and Xe in the lowest excited states.

The complexes of the Ba atom and Ba+ cation with the rare gas atoms Ar, Kr, and Xe in the states associated with the 6s → 5d, 6p excitations are investigated by means of the multireference configuration interaction techniques. Scalar relativistic potentials are obtained by the complete basis limit extrapolation through the sequence of aug-cc-pwCVnZ basis sets with the cardinal numbers n = Q, T, 5, combined with the suitable effective core potentials and benchmarked against the coupled cluster with singles, doubles, and non-iterative triples calculations and the literature data available for selected electronic states. Spin-orbit coupling is taken into account by means of the state-interacting multireference configuration interaction calculations performed for the Breit-Pauli spin-orbit Hamiltonian. The results show weak spin-orbit coupling between the states belonging to distinct atomic multiplets. General trends in the interaction strength and long-range anisotropy along the rare gas series are discussed. Vibronic spectra of the Ba and Ba+ complexes in the vicinity of the 1S → 1P° and 2S → 2P° atomic transitions and diffusion cross sections of the Ba(1S0, 3DJ) atom in high-temperature rare gases are calculated. Comparison with available experimental data shows that multireference calculations tend to underestimate the interaction strength for excited complexes.

Modeling of Manganese Atom and Dimer Isolated in Solid Rare Gases: Structure, Stability, and Effect on Spin Coupling.

Structures and energies of the trapping sites of manganese atom and dimer in solid Ar, Kr, and Xe are investigated within the classical model, which balances local distortion and long-range crystal order of the host and provides a means to estimate the relative site stabilities. The model is implemented with the additive pairwise potential field based on the ab initio and best empirical interatomic potential functions. In agreement with experiment, Mn single substitution (SS) and tetrahedral vacancy (TV) occupation are identified as stable for Ar and Kr, whereas the SS site is only found for Xe. Stable trapping sites of the weakly bound Mn2 dimer are shown to be the mergers of SS and/or TV atomic sites. For Ar, (SS + SS) and (TV + TV) sites are close in energy, whereas (SS + TV) site lies higher. The (SS + SS) accommodation is identified as the only stable site in Kr and Xe at low energies. The results are compared with the resonance Raman, electron spin resonance, and absorption spectroscopy data. Reproducing the numbers of stable sites, the calculations tend to underestimate the matrix effect on the dimer vibrational frequency and spin-spin coupling constant. Nonetheless, the level of agreement is found to be informative for tentative assignments of the complex features seen in Mn2 matrix isolation spectroscopy.