A Three-Dimensional View on Soil Biogeochemistry: A Dataset for a Forested Headwater Catchment.

Current understanding of the variability in soil properties and their relationship to processes and spatial patterns in forested landscapes is limited due to the scarcity of datasets providing such information. Here we present a spatially highly resolved dataset () that provides detailed information on the three-dimensional variability of biogeochemical properties in the Wüstebach catchment (western Germany), a long-term environmental observation site of the TERENO (Terrestrial Environmental Observatories) project. High-resolution soil sampling was conducted, and physical and biogeochemical soil parameters were recorded per horizon. The dataset is helpful in the analysis of the spatial heterogeneity in biogeochemical properties within soil horizons and with depth through the soil profile. In addition, it shows links between hydrological and biogeochemical properties and processes within the system. Overall, the dataset provides a high-resolution view into (re)cycling, leaching, and storage of nutrients on the catchment scale in a forested headwater catchment.

The Yangtze-Hydro Project: a Chinese-German environmental program.

Water of good quality is one of the basic needs of human life. Worldwide, great efforts are being undertaken for an assured water supply. In this respect, one of the largest water technology projects worldwide is the Yangtze Three Gorges Dam in China. There is a need for extensive scientific and technical understanding of the challenges arising from this large hydrological engineering project. German and Chinese groups from various scientific fields are collaborating to provide knowledge for the sustainable management of the reservoir. In this project description, the Yangtze Three Gorges Dam Project, its goals and challenges, are described in brief, and the contributions of the German research projects are presented.

Electrochemistry-mass spectrometry for mechanistic studies and simulation of oxidation processes in the environment.

Electrochemistry (EC) coupled to mass spectrometry (MS) has already been successfully applied to metabolism research for pharmaceutical applications, especially for the oxidation behaviour of drug substances. Xenobiotics (chemicals in the environment) also undergo various conversions; some of which are oxidative reactions. Therefore, EC-MS might be a suitable tool for the investigation of oxidative behaviour of xenobiotics. A further evaluation of this approach to environmental research is presented in the present paper using sulfonamide antibiotics. The results with sulfadiazine showed that EC-MS is a powerful tool for the elucidation of the oxidative degradation mechanism within a short time period. In addition, it was demonstrated that EC-MS can be used as a fast and easy method to model the chemical binding of xenobiotics to soil. The reaction of sulfadiazine with catechol, as a model substance for organic matter in soil, led to the expected chemical structure. Finally, by using EC-MS a first indication was obtained of the persistence of a component under chemical oxidation conditions for the comparison of the oxidative stability of different classes of xenobiotics. Overall, using just a few examples, the study demonstrates that EC-MS can be applied as a versatile tool for mechanistic studies of oxidative degradation pathways of xenobiotics and their possible interaction with soil organic matter as well as their oxidative stability in the environment. Further studies are needed to evaluate the full range of possibilities of the application of EC-MS in environmental research.

Transport and deposition of metabolically active and stationary phase Deinococcus radiodurans in unsaturated porous media.

Bioremediation is a cost-efficient cleanup technique that involves the use of metabolically active bacteria to degrade recalcitrant pollutants. To further develop this technique it is important to understand the migration and deposition behavior of metabolically active bacteria in unsaturated soils. Unsaturated transport experiments were therefore performed using Deinococcus radiodurans cells that were harvested during the log phase and continuously supplied with nutrients during the experiments. Additional experiments were conducted using this bacterium in the stationary phase. Different water saturations were considered in these studies, namely 100 (only stationary phase), 80, and 40%. Results from this study clearly indicated thatthe physiological state of the bacteria influenced its transport and deposition in sands. Metabolically active bacteria were more hydrophobic and exhibited greater deposition than bacteria in the stationary phase, especially at a water saturation of 40%. The breakthrough curves for active bacteria also had low concentration tailing as a result of cell growth of retained bacteria that were released into the liquid phase. Collected breakthrough curves and deposition profiles were described using a model that simultaneously considers both chemical attachment and physical straining. New concepts and hypotheses were formulated in this model to include biological aspects associated with bacteria growth inside the porous media.

Bacteria transport and deposition under unsaturated conditions: the role of the matrix grain size and the bacteria surface protein.

Unsaturated (80% water saturated) packed column experiments were conducted to investigate the influence of grain size distribution and bacteria surface macromolecules on bacteria (Rhodococcus rhodochrous) transport and deposition mechanisms. Three sizes of silica sands were used in these transport experiments, and their median grain sizes were 607, 567, and 330 microm. The amount of retained bacteria increased with decreasing sand size, and most of the deposited bacteria were found adjacent to the column inlet. The deposition profiles were not consistent with predictions based on classical filtration theory. The experimental data could be accurately characterized using a mathematical model that accounted for first-order attachment, detachment, and time and depth-dependent straining processes. Visual observations of the bacteria deposition as well as mathematical modelling indicated that straining was the dominant mechanism of deposition in these sands (78-99.6% of the deposited bacteria), which may have been enhanced due to the tendency of this bacterium to form aggregates. An additional unsaturated experiment was conducted to better deduce the role of bacteria surface macromolecules on attachment and straining processes. In this case, the bacteria surface was treated using a proteolitic enzyme. This technique was assessed by examining the Fourier-transform infrared spectrum and hydrophobicity of untreated and enzyme treated cells. Both of these analytical procedures demonstrated that this enzymatic treatment removed the surface proteins and/or associated macromolecules. Transport and modelling studies conducted with the enzyme treated bacteria, revealed a decrease in attachment, but that straining was not significantly affected by this treatment.

Comparison of sorption domains in molecular weight fractions of a soil humic acid using solid-state 19F NMR.

Humic acid was fractionated into eight different molecular size components using ultrafiltration. Solid-state CPMAS 13C NMR demonstrated that fractions larger than 100,000 Daltons were primarily aliphatic in character, while fractions smaller than 30,000 Daltons were predominantly aromatic in character. Solid-state 19F NMR examination of the sorptive uptake of hexafluorobenzene (HFB) by HA and each of the fractions gave spectroscopic evidence for the existence of at least three sorption sites in the smaller molecular size fractions, while two predominant sorption sites could be established in the larger molecular size fractions. Sorbed HFB displayed higher mobility in the smaller, more aromatic fractions while HFB in the larger, more aliphatic fractions displayed lower mobility. The relative mobilities of HFB in each sorption domain suggest that the rigid domain may be composed of aliphatic carbon rather than aromatic carbon moieties. In larger size fractions, this domain may be the result of rigid, glassy regions composed of aliphatic molecules or side chains.

Surfactants and complexing agents: new tasks for specimen banking?

Surfactants and complexing agents are chemical products that are released into the environment in large amounts after being used in cleaning processes, mineral flotation, pesticide formulations, etc. Although these compounds are largely degraded during sewage treatment in industrialized countries, significant amounts will be found in sediments or sewage sludges. Furthermore, large concentrations of these compounds can be found in small rivers and brooks in the vicinity of outfalls of sewage treatment plants. Since these compounds can be expected to alter the organic matrix of the soil (surfactants) or to remobilize heavy metals from soils or sediments (complexing agents), their occurrence in the environment and their effects have to be investigated to estimate their long-term risk potential. This could be a new task for specimen banking. To this end, (a) sensitive and specific detection methods for surfactants and complexing agents have to be developed at concentrations relevant to environmental occurrence, and (b) the effect of surfactants and complexing agents on the distribution of organic and inorganic pollutants in environmental compartments has to be investigated. Preliminary investigations show significant synergistic or antagonistic effects of various surfactants on the adsorption of pollutants at clay minerals.

Antigenic determinants of murein lipoprotein and its exposure at the surface of Enterobacteriaceae.

Murein lipoprotein from the outer membrane of Escherichia coli could be fixed to erythrocytes without pretreatment of the erythrocytes. Passive hemagglutination or immune hemolysis could thus be used as sensitive assays to determine antibodies against lipoprotein. In rabbit antisera prepared against whole cells of E. coli, Salmonella, Arizona, and Shigella antibodies against lipoprotein were present. The respective titers were lowest in encapsulated smooth strains and highest in rough mutants. Antisera against deep rough mutants showed even higher anti-lipoprotein titers than anti-R-lipopolysaccharide titers. Correspondingly,absorption of lipoprotein antibodies with enterobacterial strains was most pronounced with deep rough mutants and lowest with smooth strains. Lipoprotein becomes increasingly an immunogen as well as an antigen the more sugar residues are missing in the lipolysaccharide on the cell surface. In wild-type cells lipoprotein is buried in the outer membrane; its exposure in mutant cells is related to defects at the cell surface.