Rapid recovery of coral communities from a mass bleaching event in the summer of 2016, observed in Amitori Bay, Iriomote Island, Japan.

Devastating bleaching of coral communities at Amitori Bay, Iriomote Island, Japan, occurred in 2016 during the third global mass bleaching event in 2014-2017. The present study documented changes in coral communities in Amitori Bay from just before until after the 2016 bleaching event (2016-2020), by measuring coral cover and recruitment at nine sites (with two additional sites in 2018) in the bay. Spawning rates of acroporid corals were also monitored from 2017 to 2019 by visual observation and using bundle collectors to observe how long the effect of bleaching persisted. Reductions of 64.7 and 89.5% from 2016 to 2017 were observed in cover and recruitment of all coral families, respectively. Coral cover of all coral families recovered to pre-bleaching levels by 2020 and recruitment in 2020 was about two times greater than the pre-bleaching level. These results mirrored those of acroporids. Spawning rates of Acropora corals increased significantly from 40.6% in 2017 to 90.0% in 2019. Recovery of coral cover 4 years after the severe bleaching event was likely related to regrowth of remnants and of surviving juveniles of < 5 cm. The sudden increase in recruitment was likely driven by a combination of larval supply from other populations, increased numbers of reproductive adults, increases in spawning rates, and increased larval retention in the bay due to wind conditions in 2020. This study suggests that coral communities as in Amitori Bay will be critical for local-scale community persistence, serving as both source and sink populations. Supplementary Information: The online version contains supplementary material available at 10.1007/s00227-022-04091-2.

Random PCR-based genotyping by sequencing technology GRAS-Di (genotyping by random amplicon sequencing, direct) reveals genetic structure of mangrove fishes.

While various technologies for high-throughput genotyping have been developed for ecological studies, simple methods tolerant to low-quality DNA samples are still limited. In this study, we tested the availability of a random PCR-based genotyping-by-sequencing technology, genotyping by random amplicon sequencing, direct (GRAS-Di). We focused on population genetic analysis of estuarine mangrove fishes, including two resident species, the Amboina cardinalfish (Fibramia amboinensis, Bleeker, 1853) and the Duncker's river garfish (Zenarchopterus dunckeri, Mohr, 1926), and a marine migrant, the blacktail snapper (Lutjanus fulvus, Forster, 1801). Collections were from the Ryukyu Islands, southern Japan. PCR amplicons derived from ~130 individuals were pooled and sequenced in a single lane on a HiSeq2500 platform, and an average of three million reads was obtained per individual. Consensus contigs were assembled for each species and used for genotyping of single nucleotide polymorphisms by mapping trimmed reads onto the contigs. After quality filtering steps, 4,000-9,000 putative single nucleotide polymorphisms were detected for each species. Although DNA fragmentation can diminish genotyping performance when analysed on next-generation sequencing technology, the effect was small. Genetic differentiation and a clear pattern of isolation-by-distance was observed in F. amboinensis and Z. dunckeri by means of principal component analysis, FST and the admixture analysis. By contrast, L. fulvus comprised a genetically homogeneous population with directional recent gene flow. These genetic differentiation patterns reflect patterns of estuary use through life history. These results showed the power of GRAS-Di for fine-grained genetic analysis using field samples, including mangrove fishes.

Contaminants in tracked seabirds showing regional patterns of marine pollution.

Ocean-scale monitoring of pollution is challenging. Seabirds are useful indicators because they travel over a broad foraging range. Nevertheless, this coarse spatial resolution is not fine enough to discriminate pollution in a finer scale. Previous studies have demonstrated that pollution levels are higher in the Sea of Japan and South and East China Seas than the Northen Pacific Ocean. To test these findings in a wide-ranging animal, we tracked streaked shearwaters (Calonectris leucomelas) from four islands in Japan using global positioning system (GPS) and measured persistent organic pollutants (POPs) in the oil of their preen glands. The POPs did not change during 6 to 21 days when birds from Awashima were foraging only in the Sea of Japan, while it increased when they crossed to the Pacific through the Tsugaru Strait and foraged along the eastern coast of Hokkaido where industrial cities occur. These results indicate that POPs in the oil reflect relatively short-term exposure. Concentrations of POPs displayed greater variation among regions. Total polychlorinated biphenyls were highest in birds foraging in a small area of the semiclosed Seto Inland Sea surrounded by urbanized coast, p,p'-dichlorodiphenyltrichloroethane (DDT) was highest in birds foraging in the East China Sea, and total hexachlorocyclohexanes were highest in birds foraging in the Sea of Japan. All were lowest in birds foraging in the Pacific. This distribution of POPs concentration partly agrees with previous findings based on mussels, fish, and seawater and possibly reflects the mobility and emission sources of each type of POP. These results highlight the importance of information on the foraging area of highly mobile top predators to make them more effective monitors of regional marine pollution.

Social interactions of juvenile brown boobies at sea as observed with animal-borne video cameras.

While social interactions play a crucial role on the development of young individuals, those of highly mobile juvenile birds in inaccessible environments are difficult to observe. In this study, we deployed miniaturised video recorders on juvenile brown boobies Sula leucogaster, which had been hand-fed beginning a few days after hatching, to examine how social interactions between tagged juveniles and other birds affected their flight and foraging behaviour. Juveniles flew longer with congeners, especially with adult birds, than solitarily. In addition, approximately 40% of foraging occurred close to aggregations of congeners and other species. Young seabirds voluntarily followed other birds, which may directly enhance their foraging success and improve foraging and flying skills during their developmental stage, or both.

Development of flight performance in the brown booby.

How do birds acquire flight skills after fledging? This issue is important, as it is closely related to variation in the duration of offspring care, the causes of which remain unknown. In this study, we raised hatchling brown boobies, Sula leucogaster, and attached an acceleration data logger to each bird at fledging to record its movements. This allowed us to quantify precisely the time spent flapping, gliding and resting. The duration of foraging trips and proportion of time spent gliding during flight increased with the number of days since fledging, whereas the proportion of time spent in flight decreased. This indicates that brown boobies gradually acquire efficient flight skills during the post-fledging period, which might be the proximate cause of the long postfledging care period in this species. To the authors' knowledge, this is the first study to record precisely the ontogeny of flight behaviour in birds.