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1.
Cureus ; 15(4): e37624, 2023 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-37200635

RESUMO

Purpose We aim to determine whether kinematic chain dynamics of the hindfoot and lower leg are involved in the effect of a lateral wedge insole (LWI) on reducing lateral thrust among patients with medial compartment knee osteoarthritis (KOA). Participants and methods Eight patients with knee osteoarthritis were included in the study. Evaluation of the kinematic chain and gait analysis was performed using an inertial measurement unit (IMU). The dynamics of the kinematic chain were calculated as linear regression coefficients of the external rotation angle of the lower leg relative to the inversion angle of the hindfoot during repeated inversion and eversion of the foot in the standing position (kinematic chain ratio (KCR)). Walk tests were performed under four conditions: barefoot (BF), neutral insole (NI) with an incline of 0 degrees, and LWI with an incline of approximately 5 and 10 degrees (5LWI and 10LWI, respectively). Results The mean (± standard deviation (SD)) KCR was 1.4 ± 0.5. The KCR was significantly correlated with the change in 5LWI lateral thrust acceleration relative to BF (r = 0.74). A significant correlation was also observed between changes in the hindfoot evolution angle and lower leg internal rotation angle with a 10LWI with respect to BF and NI, and changes in lateral thrust acceleration. Conclusion The results of this study suggest that the kinematic chain is involved in the effects of an LWI in patients with knee osteoarthritis.

2.
Nucleic Acids Res ; 50(9): 5080-5094, 2022 05 20.
Artigo em Inglês | MEDLINE | ID: mdl-35544282

RESUMO

The Dlk1-Dio3 imprinted domain is controlled by an imprinting control region (ICR) called IG-DMR that is hypomethylated on the maternal allele and hypermethylated on the paternal allele. Although several genetic mutation experiments have shown that IG-DMR is essential for imprinting control of the domain, how DNA methylation itself functions has not been elucidated. Here, we performed both gain and loss of DNA methylation experiments targeting IG-DMR by transiently introducing CRISPR/Cas9 based-targeted DNA methylation editing tools along with one guide RNA into mouse ES cells. Altered DNA methylation, particularly at IG-DMR-Rep, which is a tandem repeat containing ZFP57 methylated DNA-binding protein binding motifs, affected the imprinting state of the whole domain, including DNA methylation, imprinted gene expression, and histone modifications. Moreover, the altered imprinting states were persistent through neuronal differentiation. Our results suggest that the DNA methylation state at IG-DMR-Rep, but not other sites in IG-DMR, is a master element to determine whether the allele behaves as the intrinsic maternal or paternal allele. Meanwhile, this study provides a robust strategy and methodology to study core DNA methylation in cis-regulatory elements, such as ICRs and enhancers.


Assuntos
Metilação de DNA , RNA Longo não Codificante , Alelos , Animais , Proteínas de Ligação ao Cálcio/genética , Metilação de DNA/genética , Epigenoma , Impressão Genômica , Camundongos , RNA Longo não Codificante/genética
3.
F1000Res ; 3: 60, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24741441

RESUMO

RNA interference (RNAi) is widely used to suppress gene expression in a specific manner. The efficacy of RNAi is mainly dependent on the sequence of small interfering RNA (siRNA) in relation to the target mRNA. Although several algorithms have been developed for the design of siRNA, it is still difficult to choose a really effective siRNA from among multiple candidates. In this article, we report the development of an image-based, quantitative, ratiometric fluorescence reporter assay to evaluate the efficacy of RNAi at the single-cell level. Two fluorescence reporter constructs are used. One expresses the candidate small hairpin RNA (shRNA) together with an enhanced green fluorescent protein (EGFP); the other expresses a 19-nt target sequence inserted into a cassette expressing a red fluorescent protein (either DsRed or mCherry). Effectiveness of the candidate shRNA is evaluated as the extent to which it knocks down expression of the red fluorescent protein. Thus, the red-to-green fluorescence intensity ratio (appropriately normalized to controls) is used as the read-out for quantifying the siRNA efficacy at the individual cell level. We tested this dual fluorescence assay and compared predictions to actual endogenous knockdown levels for three different genes (vimentin, lamin A/C and Arp3) and twenty different shRNAs. For each of the genes, our assay successfully predicted the target sequences for effective RNAi. To further facilitate testing of RNAi efficacy, we developed a negative selection marker ( ccdB) method for construction of shRNA and red fluorescent reporter plasmids that allowed us to purify these plasmids directly from transformed bacteria without the need for colony selection and DNA sequencing verification.

4.
Pediatr Surg Int ; 29(7): 753-7, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23543098

RESUMO

Malignant tumors of the urinary bladder in infants are extremely rare. Rhabdomyosarcoma is the most likely tumor in this site, whereas neuroblastoma of the urinary bladder is exceedingly uncommon and is not listed as a differential diagnosis for tumors of this site. We present a case of neuroblastoma arising from the dome of the bladder wall, detected by hematuria. Only six cases of neuroblastoma originating from the bladder, including the present case have been reported. Of the cases, five arose from the dome of the bladder wall. In this report, the differential diagnosis of bladder tumors in children is discussed. A diagnosis of neuroblastoma should be taken into consideration, especially in the case of tumors arising from the dome of the bladder wall despite an uncommon location.


Assuntos
Hematúria/etiologia , Neuroblastoma/complicações , Neuroblastoma/diagnóstico , Neoplasias da Bexiga Urinária/complicações , Neoplasias da Bexiga Urinária/diagnóstico , Diagnóstico Diferencial , Humanos , Lactente , Masculino , Neuroblastoma/terapia , Tomografia Computadorizada por Raios X/métodos , Ultrassonografia , Bexiga Urinária/diagnóstico por imagem , Bexiga Urinária/cirurgia , Neoplasias da Bexiga Urinária/terapia
5.
Pediatr Surg Int ; 29(6): 545-51, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23519548

RESUMO

BACKGROUND: Gastroesophageal reflux disease (GERD) in patients with neurological impairment (NI) has not been fully studied before and after fundoplication procedure because their characteristics such as generalized gastrointestinal dysmotility, non-acid reflux, and the proximal reflux due to feeding of enteral nutrition via a nasogastric tube prevent their GERD from being detected by 24 h pH monitoring. The aim of this study was to elucidate whether multichannel impedance-pH measurement (pH/MII) is able to detect the subtypes of GERD and the differences in the reflux episodes of the severity of GERD, the ingestion pathway, and before and after fundoplication. The second aim was to determine whether a trial evaluation of dry swallows was able to be used to assess the esophageal motility of NI patients as an alternative examination. PATIENTS AND METHODS: The 24 h pH/MII was conducted on 20 NI children [15 were the patients before Nissen's fundoplication (BN), of whom, six were fed orally (FO) and nine were fed via nasogastric tube (NGT), and five were the patients after Nissen's fundoplication (AN)]. All reflux episodes were evaluated and compared between patients with pathological GERD (PG) and non-pathological GERD (NG) and between patients who had FO and NGT and patients between BN and AN. Dry swallows were conducted to evaluate the esophageal motility. The average bolus presence time (BPT) and total bolus transit time (TBTT) were compared between the PG and NG, FO and NGT, and the BN and AN subgroups. RESULTS: A total of 1,064 reflux episodes were detected by pH/MII. Of those, 303 (28.5 %) were non-acid-related and 477 episodes reached the proximal esophagus. Of the 12 patients (57.1 %) showing pathological GERD, two cases (16.7 %) demonstrated predominantly weakly acidic PG. More than half of the reflux episodes of PG patients reached to the proximal esophagus. The numbers of total reflux and proximal reflux episodes in the PG were significantly higher than those in NG patients. The number of proximal reflux episodes in the FO group was significantly higher than that in the NGT groups, whereas NGT patients showed more non-acidic reflux episodes than FO patients. A trial evaluation of dry swallows demonstrated no significant differences in this study. CONCLUSION: The pH/MII was useful to detect the subtype of GERD in NI patients which could not be detected by 24 h pH monitoring. It can, therefore, be considered to have first priority for testing NI patients who are suspected to be suffering from GERD.


Assuntos
Esôfago/fisiopatologia , Fundoplicatura/métodos , Refluxo Gastroesofágico/diagnóstico , Doenças do Sistema Nervoso/complicações , Adolescente , Criança , Pré-Escolar , Impedância Elétrica , Monitoramento do pH Esofágico , Esôfago/metabolismo , Esôfago/cirurgia , Feminino , Refluxo Gastroesofágico/metabolismo , Refluxo Gastroesofágico/cirurgia , Humanos , Concentração de Íons de Hidrogênio , Lactente , Masculino , Manometria/métodos , Doenças do Sistema Nervoso/fisiopatologia , Período Pós-Operatório , Período Pré-Operatório , Adulto Jovem
6.
Am J Pathol ; 177(6): 2921-37, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-21075858

RESUMO

Desmoglein 1 (Dsg1) is a desmosomal cadherin that is essential to epidermal integrity. In the blistering diseases bullous impetigo and staphylococcal scalded-skin syndrome, pathogenesis depends on cleavage of Dsg1 by a bacterial protease, exfoliative toxin A, which removes residues 1 to 381 of the Dsg1 ectodomain. However, the cellular responses to Dsg1 cleavage that precipitate keratinocyte separation to induce blister formation are unknown. Here, we show that ectodomain-deleted Dsg1 (Δ381-Dsg1) mimics the toxin-cleaved cadherin, disrupts desmosomes, and reduces the mechanical integrity of keratinocyte sheets. In addition, we demonstrate that truncated Dsg1 remains associated with its catenin partner, plakoglobin, and causes a reduction in the levels of endogenous desmosomal cadherins in a dose-dependent manner, leading us to hypothesize that plakoglobin sequestration by truncated Dsg1 destabilizes other cadherins. Accordingly, a triple-point mutant of the ectodomain-deleted cadherin, which is uncoupled from plakoglobin, does not impair adhesion, indicating that this interaction is essential to the pathogenic potential of truncated Dsg1. Moreover, we demonstrate that increasing plakoglobin levels rescues cadherin expression, desmosome organization, and functional adhesion in cells expressing Δ381-Dsg1 or treated with exfoliative toxin A. Finally, we report that histone deacetylase inhibition up-regulates desmosomal cadherins and prevents the loss of adhesion induced by Dsg1 truncation. These findings further our understanding of the mechanism of exfoliative toxin-induced pathology and suggest novel strategies to suppress blistering in bulbous impetigo and staphylococcal scalded-skin syndrome.


Assuntos
Vesícula/etiologia , Dermatite Esfoliativa/etiologia , Desmogleína 1/genética , Exfoliatinas/efeitos adversos , Domínios e Motivos de Interação entre Proteínas/genética , Deleção de Sequência/fisiologia , gama Catenina/fisiologia , Vesícula/genética , Vesícula/patologia , Adesão Celular/genética , Células Cultivadas , Dermatite Esfoliativa/genética , Dermatite Esfoliativa/patologia , Desmogleína 1/química , Desmogleína 1/metabolismo , Desmogleína 1/fisiologia , Caderinas de Desmossomos/química , Caderinas de Desmossomos/genética , Caderinas de Desmossomos/metabolismo , Caderinas de Desmossomos/fisiologia , Exfoliatinas/farmacologia , Humanos , Queratinócitos/efeitos dos fármacos , Queratinócitos/metabolismo , Queratinócitos/patologia , Queratinócitos/fisiologia , Domínios e Motivos de Interação entre Proteínas/fisiologia , Processamento de Proteína Pós-Traducional/efeitos dos fármacos , Pele/metabolismo , Pele/patologia , Infecções Cutâneas Estafilocócicas/genética , Infecções Cutâneas Estafilocócicas/metabolismo , Infecções Cutâneas Estafilocócicas/patologia , Transdução Genética , gama Catenina/genética , gama Catenina/metabolismo
7.
J Med Chem ; 53(15): 5684-9, 2010 Aug 12.
Artigo em Inglês | MEDLINE | ID: mdl-20684605

RESUMO

Fluctuations in the brain levels of the neuromodulator kynurenic acid may control cognitive processes and play a causative role in several catastrophic brain diseases. Elimination of the pyridoxal 5'-phosphate dependent enzyme kynurenine aminotransferase II reduces cerebral kynurenic acid synthesis and has procognitive effects. The present description of the crystal structure of human kynurenine aminotransferase II in complex with its potent and specific primary amine-bearing fluoroquinolone inhibitor (S)-(-)-9-(4-aminopiperazin-1-yl)-8-fluoro-3-methyl-6-oxo-2,3-dihydro-6H-1-oxa-3a-azaphenalene-5-carboxylic acid (BFF-122) should facilitate the structure-based development of cognition-enhancing drugs. From a medicinal chemistry perspective our results demonstrate that the issue of inhibitor specificity for highly conserved PLP-dependent enzymes could be successfully addressed.


Assuntos
Fluoroquinolonas/química , Nootrópicos/química , Piperazinas/química , Fosfato de Piridoxal/fisiologia , Transaminases/química , Adulto , Encéfalo/efeitos dos fármacos , Encéfalo/enzimologia , Cristalografia por Raios X , Fluoroquinolonas/farmacologia , Humanos , Técnicas In Vitro , Modelos Moleculares , Nootrópicos/farmacologia , Piperazinas/farmacologia , Conformação Proteica , Estereoisomerismo , Transaminases/antagonistas & inibidores
8.
FASEB J ; 24(6): 1838-51, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20097873

RESUMO

Vimentin is used widely as a marker of the epithelial to mesenchymal transitions (EMTs) that take place during embryogenesis and metastasis, yet the functional implications of the expression of this type III intermediate filament (IF) protein are poorly understood. Using form factor analysis and quantitative Western blotting of normal, metastatic, and vimentin-null cell lines, we show that the level of expression of vimentin IFs (VIFs) correlates with mesenchymal cell shape and motile behavior. The reorganization of VIFs caused by expressing a dominant-negative mutant or by silencing vimentin with shRNA (neither of which alter microtubule or microfilament assembly) causes mesenchymal cells to adopt epithelial shapes. Following the microinjection of vimentin or transfection with vimentin cDNA, epithelial cells rapidly adopt mesenchymal shapes coincident with VIF assembly. These shape transitions are accompanied by a loss of desmosomal contacts, an increase in cell motility, and a significant increase in focal adhesion dynamics. Our results demonstrate that VIFs play a predominant role in the changes in shape, adhesion, and motility that occur during the EMT.


Assuntos
Adesão Celular/fisiologia , Movimento Celular/fisiologia , Forma Celular , Células Epiteliais/citologia , Vimentina/fisiologia , Neoplasias da Mama/patologia , Transdiferenciação Celular , Desmossomos , Feminino , Humanos , Mesoderma/citologia , RNA Interferente Pequeno/farmacologia , Células Tumorais Cultivadas
9.
Methods Mol Biol ; 585: 127-46, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-19908001

RESUMO

Gene silencing approaches afford investigators the ability to gain important insight into the normal functional requirements of specific epidermal proteins and promise to yield a powerful therapeutic means to dampen the level of proteins that are mutated or frequently overexpressed in skin disease. The efficient and tractable delivery of siRNAs into epidermal keratinocytes is seminal to this process. Here, we describe techniques for transient and long-term silencing of a representative gene product, namely desmoglein 1, in primary human epidermal keratinocytes maintained as submerged cultures or three-dimensional organotypic raft cultures. As a complement to epidermal-specific gene targeting strategies in mice, these technical approaches permit relatively rapid loss-of-function studies purely in keratinocytes without some of the potential influences present in situ, such as an immune system or vasculature.


Assuntos
Epiderme/metabolismo , Queratinócitos/metabolismo , Interferência de RNA , Animais , Diferenciação Celular , Células Cultivadas , Células Epidérmicas , Humanos , Queratinócitos/citologia , Camundongos , Engenharia Tecidual , Transdução Genética
10.
J Cell Biol ; 185(7): 1243-58, 2009 Jun 29.
Artigo em Inglês | MEDLINE | ID: mdl-19546243

RESUMO

Dsg1 (desmoglein 1) is a member of the cadherin family of Ca(2+)-dependent cell adhesion molecules that is first expressed in the epidermis as keratinocytes transit out of the basal layer and becomes concentrated in the uppermost cell layers of this stratified epithelium. In this study, we show that Dsg1 is not only required for maintaining epidermal tissue integrity in the superficial layers but also supports keratinocyte differentiation and suprabasal morphogenesis. Dsg1 lacking N-terminal ectodomain residues required for adhesion remained capable of promoting keratinocyte differentiation. Moreover, this capability did not depend on cytodomain interactions with the armadillo protein plakoglobin or coexpression of its companion suprabasal cadherin, Dsc1 (desmocollin 1). Instead, Dsg1 was required for suppression of epidermal growth factor receptor-Erk1/2 (extracellular signal-regulated kinase 1/2) signaling, thereby facilitating keratinocyte progression through a terminal differentiation program. In addition to serving as a rigid anchor between adjacent cells, this study implicates desmosomal cadherins as key components of a signaling axis governing epithelial morphogenesis.


Assuntos
Diferenciação Celular/fisiologia , Desmogleína 1/metabolismo , Epiderme/fisiologia , Receptores ErbB/metabolismo , Queratinócitos/fisiologia , Morfogênese/fisiologia , Transdução de Sinais/fisiologia , Adesão Celular/fisiologia , Células Cultivadas , Desmogleína 1/genética , Ativação Enzimática , Células Epidérmicas , Receptores ErbB/genética , MAP Quinases Reguladas por Sinal Extracelular/metabolismo , Humanos , Queratinócitos/citologia , MicroRNAs/genética , MicroRNAs/metabolismo , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Técnicas de Cultura de Tecidos
11.
Genes Dev ; 22(24): 3409-21, 2008 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-19141474

RESUMO

The nuclear lamins function in the regulation of replication, transcription, and epigenetic modifications of chromatin. However, the mechanisms responsible for these lamin functions are poorly understood. We demonstrate that A- and B-type lamins form separate, but interacting, stable meshworks in the lamina and have different mobilities in the nucleoplasm as determined by fluorescence correlation spectroscopy (FCS). Silencing lamin B1 (LB1) expression dramatically increases the lamina meshwork size and the mobility of nucleoplasmic lamin A (LA). The changes in lamina mesh size are coupled to the formation of LA/C-rich nuclear envelope blebs deficient in LB2. Comparative genomic hybridization (CGH) analyses of microdissected blebs, fluorescence in situ hybridization (FISH), and immunofluorescence localization of modified histones demonstrate that gene-rich euchromatin associates with the LA/C blebs. Enrichment of hyperphosphorylated RNA polymerase II (Pol II) and histone marks for active transcription suggest that blebs are transcriptionally active. However, in vivo labeling of RNA indicates that transcription is decreased, suggesting that the LA/C-rich microenvironment induces promoter proximal stalling of Pol II. We propose that different lamins are organized into separate, but interacting, microdomains and that LB1 is essential for their organization. Our evidence suggests that the organization and regulation of chromatin are influenced by interconnections between these lamin microdomains.


Assuntos
Cromatina/genética , Cromatina/metabolismo , Proteínas do Citoesqueleto/genética , Regulação da Expressão Gênica , Lamina Tipo A/genética , DNA Polimerase II/metabolismo , Inativação Gênica , Células HeLa , Humanos , Lâmina Nuclear/metabolismo
12.
PLoS Biol ; 5(11): e317, 2007 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18044991

RESUMO

Actin polymerization-driven protrusion of the leading edge is a key element of cell motility. The important actin nucleators formins and the Arp2/3 complex are believed to have nonoverlapping functions in inducing actin filament bundles in filopodia and dendritic networks in lamellipodia, respectively. We tested this idea by investigating the role of mDia2 formin in leading-edge protrusion by loss-of-function and gain-of-function approaches. Unexpectedly, mDia2 depletion by short interfering RNA (siRNA) severely inhibited lamellipodia. Structural analysis of the actin network in the few remaining lamellipodia suggested an mDia2 role in generation of long filaments. Consistently, constitutively active mDia2 (DeltaGBD-mDia2) induced accumulation of long actin filaments in lamellipodia and increased persistence of lamellipodial protrusion. Depletion of mDia2 also inhibited filopodia, whereas expression of DeltaGBD-mDia2 promoted their formation. Correlative light and electron microscopy showed that DeltaGBD-mDia2-induced filopodia were formed from lamellipodial network through gradual convergence of long lamellipodial filaments into bundles. Efficient filopodia induction required mDia2 targeting to the membrane, likely through a scaffolding protein Abi1. Furthermore, mDia2 and Abi1 interacted through the N-terminal regulatory sequences of mDia2 and the SH3-containing Abi1 sequences. We propose that mDia2 plays an important role in formation of lamellipodia by nucleating and/or protecting from capping lamellipodial actin filaments, which subsequently exhibit high tendency to converge into filopodia.


Assuntos
Proteínas de Transporte/genética , Movimento Celular/fisiologia , Pseudópodes/metabolismo , Complexo 2-3 de Proteínas Relacionadas à Actina/genética , Complexo 2-3 de Proteínas Relacionadas à Actina/metabolismo , Proteínas Adaptadoras de Transdução de Sinal/genética , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Animais , Proteínas de Transporte/metabolismo , Membrana Celular/metabolismo , Proteínas do Citoesqueleto/genética , Proteínas do Citoesqueleto/metabolismo , Forminas , Expressão Gênica , Inativação Gênica , Células HeLa , Humanos , Camundongos , Microscopia Eletrônica de Varredura , Pseudópodes/ultraestrutura , RNA Interferente Pequeno/genética
13.
Mol Biol Cell ; 18(7): 2579-91, 2007 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17475772

RESUMO

Filopodia have been implicated in a number of diverse cellular processes including growth-cone path finding, wound healing, and metastasis. The Ena/VASP family of proteins has emerged as key to filopodia formation but the exact mechanism for how they function has yet to be fully elucidated. Using cell spreading as a model system in combination with small interfering RNA depletion of Capping Protein, we determined that Ena/VASP proteins have a role beyond anticapping activity in filopodia formation. Analysis of mutant Ena/VASP proteins demonstrated that the entire EVH2 domain was the minimal domain required for filopodia formation. Fluorescent recovery after photobleaching data indicate that Ena/VASP proteins rapidly exchange at the leading edge of lamellipodia, whereas virtually no exchange occurred at filopodial tips. Mutation of the G-actin-binding motif (GAB) partially compromised stabilization of Ena/VASP at filopodia tips. These observations led us to propose a model where the EVH2 domain of Ena/VASP induces and maintains clustering of the barbed ends of actin filaments, which putatively corresponds to a transition from lamellipodial to filopodial localization. Furthermore, the EVH1 domain, together with the GAB motif in the EVH2 domain, helps to maintain Ena/VASP at the growing barbed ends.


Assuntos
Proteínas de Capeamento de Actina/metabolismo , Moléculas de Adesão Celular/metabolismo , Proteínas dos Microfilamentos/metabolismo , Fosfoproteínas/metabolismo , Pseudópodes/metabolismo , Actinas/metabolismo , Animais , Células COS , Moléculas de Adesão Celular/química , Linhagem Celular , Movimento Celular , Polaridade Celular , Chlorocebus aethiops , Proteínas do Citoesqueleto/metabolismo , Recuperação de Fluorescência Após Fotodegradação , Humanos , Camundongos , Proteínas dos Microfilamentos/química , Modelos Biológicos , Mutação/genética , Fenótipo , Fosfoproteínas/química , Fosforilação , Estrutura Terciária de Proteína , Serina/metabolismo
14.
J Cell Biol ; 174(6): 863-75, 2006 Sep 11.
Artigo em Inglês | MEDLINE | ID: mdl-16966425

RESUMO

In this study, the mechanisms of actin-bundling in filopodia were examined. Analysis of cellular localization of known actin cross-linking proteins in mouse melanoma B16F1 cells revealed that fascin was specifically localized along the entire length of all filopodia, whereas other actin cross-linkers were not. RNA interference of fascin reduced the number of filopodia, and remaining filopodia had abnormal morphology with wavy and loosely bundled actin organization. Dephosphorylation of serine 39 likely determined cellular filopodia frequency. The constitutively active fascin mutant S39A increased the number and length of filopodia, whereas the inactive fascin mutant S39E reduced filopodia frequency. Fluorescence recovery after photobleaching of GFP-tagged wild-type and S39A fascin showed that dephosphorylated fascin underwent rapid cycles of association to and dissociation from actin filaments in filopodia, with t(1/2) < 10 s. We propose that fascin is a key specific actin cross-linker, providing stiffness for filopodial bundles, and that its dynamic behavior allows for efficient coordination between elongation and bundling of filopodial actin filaments.


Assuntos
Citoesqueleto de Actina/metabolismo , Citoesqueleto de Actina/ultraestrutura , Proteínas de Transporte/metabolismo , Movimento Celular/fisiologia , Proteínas dos Microfilamentos/metabolismo , Pseudópodes/metabolismo , Pseudópodes/ultraestrutura , Animais , Proteínas de Transporte/genética , Linhagem Celular Tumoral , Recuperação de Fluorescência Após Fotodegradação , Camundongos , Proteínas dos Microfilamentos/genética , Microscopia Eletrônica , Fosforilação , Ligação Proteica/fisiologia , Proteínas Recombinantes de Fusão/metabolismo , Serina/metabolismo
15.
DNA Res ; 12(2): 117-26, 2005.
Artigo em Inglês | MEDLINE | ID: mdl-16303743

RESUMO

We have developed an in silico method of selection of human full-length cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. Fullness rates were increased to about 80% by combination of the oligo-capping method and ATGpr, software for prediction of translation start point and the coding potential. Then, using 5'-end single-pass sequences, cDNAs having the signal sequence were selected by PSORT ('signal sequence trap'). We also applied 'secretion or membrane protein-related keyword trap' based on the result of BLAST search against the SWISS-PROT database for the cDNAs which could not be selected by PSORT. Using the above procedures, 789 cDNAs were primarily selected and subjected to full-length sequencing, and 334 of these cDNAs were finally selected as novel. Most of the cDNAs (295 cDNAs: 88.3%) were predicted to encode secretion or membrane proteins. In particular, 165(80.5%) of the 205 cDNAs selected by PSORT were predicted to have signal sequences, while 70 (54.2%) of the 129 cDNAs selected by 'keyword trap' preserved the secretion or membrane protein-related keywords. Many important cDNAs were obtained, including transporters, receptors, and ligands, involved in significant cellular functions. Thus, an efficient method of selecting secretion or membrane protein-encoding cDNAs was developed by combining the above four procedures.


Assuntos
Biblioteca Gênica , Proteínas de Membrana/genética , Sinais Direcionadores de Proteínas , Região 5'-Flanqueadora , Linhagem Celular Tumoral , Clonagem Molecular , Humanos , Oligonucleotídeos/genética
16.
Cell ; 118(3): 363-73, 2004 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-15294161

RESUMO

Understanding how a particular cell type expresses the lamellipodial or filopodial form of the actin machinery is essential to understanding a cell's functional interactions. To determine how a cell "chooses" among these alternative modes of "molecular hardware," we tested the role of key proteins that affect actin filament barbed ends. Depletion of capping protein (CP) by short hairpin RNA (shRNA) caused loss of lamellipodia and explosive formation of filopodia. The knockdown phenotype was rescued by a CP mutant refractory to shRNA, but not by another barbed-end capper, gelsolin, demonstrating that the phenotype was specific for CP. In Ena/VASP deficient cells, CP depletion resulted in ruffling instead of filopodia. We propose a model for selection of lamellipodial versus filopodial organization in which CP is a negative regulator of filopodia formation and Ena/VASP has recruiting/activating functions downstream of actin filament elongation in addition to its previously suggested anticapping and antibranching activities.


Assuntos
Actinas/metabolismo , Proteínas do Citoesqueleto , Pseudópodes/metabolismo , Fatores de Despolimerização de Actina , Animais , Proteínas de Transporte/metabolismo , Moléculas de Adesão Celular/metabolismo , Destrina , Cinética , Camundongos , Proteínas dos Microfilamentos/metabolismo , Microscopia Eletrônica , Fosfoproteínas/metabolismo , Pseudópodes/ultraestrutura
17.
Biotechniques ; 36(1): 74-9, 2004 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-14740488

RESUMO

Small interfering RNA (siRNA) is a powerful tool for the specific silencing of gene expression. We developed an improved vector, pG-SUPER, that co-expresses green fluorescent protein (GFP) and small hairpin RNA simultaneously to facilitate analysis of silencing at the level of individual cells. As a test system, we analyzed lamin A/C knockdown in HeLa cells. The GFP signal was a reliable reporter (93%-98%) of strong knockdown (approximately 90%) over a wide range of GFP intensities. The GFP reporter made possible the application of fluorescent-activated cell sorting (FACS) to purify the knockdown cell population. Such populations facilitated Western blotting analysis to determine depletion of the target protein. pG-SUPER was also applied to evaluate gene replacement by exogenous genes rendered refractory to siRNA by introducing silent mutations. Recovery of lamin A was linearly correlated to the expression level of the rescue gene. pG-SUPER will expand plasmid-based siRNA applications through the easy and reliable detection of knockdown and rescued cells.


Assuntos
Inativação Gênica , Vetores Genéticos/genética , Laminas/genética , Proteínas Luminescentes/genética , RNA Interferente Pequeno/genética , Transfecção/métodos , Proteínas de Fluorescência Verde , Células HeLa , Humanos , Lamina Tipo A/genética , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes/genética
18.
J Interferon Cytokine Res ; 23(11): 667-76, 2003 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-14651781

RESUMO

2'-5'-Oligoadenylate synthetase (OAS), an interferon (IFN) induced enzyme, synthesizes 2'-5'-oligoadenylate (2-5A) from ATP when activated by dsRNA. Chicken OAS (ChOAS) has a ubiquitin-like (UbL) domain of two consecutive sequences (UbL1 and UbL2) at its carboxyl-terminus. The OAS gene has at least two alleles, OAS*A and OAS*B. OAS-A is the wild-type (wt) and OAS-B is a mutant deleted of a highly hydrophobic region of UbL1. To study the function of the UbL domain, enzymatic and physiologic properties were compared between OAS-A and OAS-B. OAS-B was more susceptible to trypsin than OAS-A and was converted very quickly into p38, deleting a greater part of the UbL domain. The p38 has the enzymatic activity to synthesize 2-5A. Thermal inactivation of OAS-B occurred at a lower temperature than that of OAS-A and p38, with loss of the ability to bind dsRNA. In contrast to OAS-A, the content of OAS-B in erythrocytes decreased during growth to a very low level. However, red blood cells (RBC) from anemic B/B chickens synthesized OAS-B at a high level comparable to A/A, although OAS-B levels decreased sharply again during maturation to erythrocytes. Thus, OAS-B carrying the mutated UbL domain is unstable compared with OAS-A in vitro and in vivo, and the wt UbL domain may contribute to the stability of the protein structure of ChOAS.


Assuntos
2',5'-Oligoadenilato Sintetase/química , 2',5'-Oligoadenilato Sintetase/genética , Alelos , Conformação Proteica , Ubiquitinas/química , 2',5'-Oligoadenilato Sintetase/metabolismo , Sequência de Aminoácidos , Animais , Galinhas , Estabilidade Enzimática , Eritrócitos/enzimologia , Dados de Sequência Molecular , Mutação , Estrutura Terciária de Proteína
19.
J Cell Biol ; 163(3): 547-57, 2003 Nov 10.
Artigo em Inglês | MEDLINE | ID: mdl-14610057

RESUMO

p120 catenin (p120) is a component of adherens junctions and has been implicated in regulating cadherin-based cell adhesion as well as the activity of Rho small GTPases, but its exact roles in cell-cell adhesion are unclear. Using time-lapse imaging, we show that p120-GFP associates with vesicles and exhibits unidirectional movements along microtubules. Furthermore, p120 forms a complex with kinesin heavy chain through the p120 NH2-terminal head domain. Overexpression of p120, but not an NH2-terminal deletion mutant deficient in kinesin binding, recruits endogenous kinesin to N-cadherin. Disruption of the interaction between N-cadherin and p120, or the interaction between p120 and kinesin, leads to a delayed accumulation of N-cadherin at cell-cell contacts during calcium-initiated junction reassembly. Our analyses identify a novel role of p120 in promoting cell surface trafficking of cadherins via association and recruitment of kinesin.


Assuntos
Junções Aderentes/metabolismo , Caderinas/metabolismo , Moléculas de Adesão Celular/metabolismo , Adesão Celular/genética , Cinesinas/metabolismo , Fosfoproteínas/metabolismo , Transporte Proteico/genética , Junções Aderentes/genética , Caderinas/genética , Sinalização do Cálcio/genética , Cateninas , Moléculas de Adesão Celular/genética , Linhagem Celular , Humanos , Cinesinas/genética , Substâncias Macromoleculares , Microtúbulos/metabolismo , Mutação/genética , Fosfoproteínas/genética , Ligação Proteica/genética , Estrutura Terciária de Proteína/genética , Vesículas Transportadoras/metabolismo , Vesículas Transportadoras/ultraestrutura , delta Catenina
20.
J Cell Biol ; 160(3): 409-21, 2003 Feb 03.
Artigo em Inglês | MEDLINE | ID: mdl-12566431

RESUMO

Afilopodium protrudes by elongation of bundled actin filaments in its core. However, the mechanism of filopodia initiation remains unknown. Using live-cell imaging with GFP-tagged proteins and correlative electron microscopy, we performed a kinetic-structural analysis of filopodial initiation in B16F1 melanoma cells. Filopodial bundles arose not by a specific nucleation event, but by reorganization of the lamellipodial dendritic network analogous to fusion of established filopodia but occurring at the level of individual filaments. Subsets of independently nucleated lamellipodial filaments elongated and gradually associated with each other at their barbed ends, leading to formation of cone-shaped structures that we term Lambda-precursors. An early marker of initiation was the gradual coalescence of GFP-vasodilator-stimulated phosphoprotein (GFP-VASP) fluorescence at the leading edge into discrete foci. The GFP-VASP foci were associated with Lambda-precursors, whereas Arp2/3 was not. Subsequent recruitment of fascin to the clustered barbed ends of Lambda-precursors initiated filament bundling and completed formation of the nascent filopodium. We propose a convergent elongation model of filopodia initiation, stipulating that filaments within the lamellipodial dendritic network acquire privileged status by binding a set of molecules (including VASP) to their barbed ends, which protect them from capping and mediate association of barbed ends with each other.


Assuntos
Citoesqueleto de Actina/metabolismo , Movimento Celular/fisiologia , Dendritos/metabolismo , Células Eucarióticas/metabolismo , Pseudópodes/metabolismo , Citoesqueleto de Actina/ultraestrutura , Proteína 2 Relacionada a Actina , Animais , Sítios de Ligação/fisiologia , Moléculas de Adesão Celular/metabolismo , Tamanho Celular/fisiologia , Proteínas do Citoesqueleto/metabolismo , Dendritos/ultraestrutura , Células Eucarióticas/ultraestrutura , Proteínas de Fluorescência Verde , Cinética , Proteínas Luminescentes , Camundongos , Proteínas dos Microfilamentos , Microscopia Eletrônica , Estrutura Molecular , Fosfoproteínas/metabolismo , Pseudópodes/ultraestrutura , Proteínas Recombinantes de Fusão , Células Tumorais Cultivadas
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