Conversion of boreal forests to agricultural systems: soil microbial responses along a land-conversion chronosequence.

BACKGROUND: Boreal regions are warming at more than double the global average, creating opportunities for the northward expansion of agriculture. Expanding agricultural production in these regions will involve the conversion of boreal forests to agricultural fields, with cumulative impacts on soil microbial communities and associated biogeochemical cycling processes. Understanding the magnitude or rate of change that will occur with these biological processes will provide information that will enable these regions to be developed in a more sustainable manner, including managing carbon and nitrogen losses. This study, based in the southern boreal region of Canada where agricultural expansion has been occurring for decades, used a paired forest-adjacent agricultural field approach to quantify how soil microbial communities and functions were altered at three different stages post-conversion (< 10, > 10 and < 50, and > 50 years). Soil microbial functional capacity was assessed by quantitative PCR of genes associated with carbon (C), nitrogen, and phosphorous (P) cycling; microbial taxonomic diversity and community structure was assessed by amplicon sequencing. RESULTS: Fungal alpha diversity did not change, but communities shifted from Basidiomycota to Ascomycota dominant within the first decade. Bacterial alpha diversity increased, with Gemmatimonadota groups generally increasing and Actinomycetota groups generally decreasing in agricultural soils. These altered communities led to altered functional capacity. Functional genes associated with nitrification and low molecular weight C cycling potential increased after conversion, while those associated with organic P mineralization potential decreased. Stable increases in most N cycling functions occurred within the first decade, but C cycling functions were still changing 50 years post conversion. CONCLUSIONS: Microbial communities underwent a rapid shift in the first decade, followed by several decades of slower transition until stabilizing 50 years post conversion. Understanding how the microbial communities respond at different stages post-conversion improves our ability to predict C and N losses from emerging boreal agricultural systems, and provides insight into how best to manage these soils in a way that is sustainable at the local level and within a global context.

Elevated temperature alters microbial communities, but not decomposition rates, during 3 years of in situ peat decomposition.

IMPORTANCE: Microbial community changes in response to climate change drivers have the potential to alter the trajectory of important ecosystem functions. In this paper, we show that while microbial communities in peatland systems responded to manipulations of temperature and CO2 concentrations, these changes were not associated with similar responses in peat decomposition rates over 3 years. It is unclear however from our current studies whether this functional resiliency over 3 years will continue over the longer time scales relevant to peatland ecosystem functions.

Peat loss collocates with a threshold in plant-mycorrhizal associations in drained peatlands encroached by trees.

Drainage-induced encroachment by trees may have major effects on the carbon balance of northern peatlands, and responses of microbial communities are likely to play a central mechanistic role. We profiled the soil fungal community and estimated its genetic potential for the decay of lignin and phenolics (class II peroxidase potential) along peatland drainage gradients stretching from interior locations (undrained, open) to ditched locations (drained, forested). Mycorrhizal fungi dominated the community across the gradients. When moving towards ditches, the dominant type of mycorrhizal association abruptly shifted from ericoid mycorrhiza to ectomycorrhiza at c. 120 m from the ditches. This distance corresponded with increased peat loss, from which more than half may be attributed to oxidation. The ectomycorrhizal genus Cortinarius dominated at the drained end of the gradients and its relatively higher genetic potential to produce class II peroxidases (together with Mycena) was positively associated with peat humification and negatively with carbon-to-nitrogen ratio. Our study is consistent with a plant-soil feedback mechanism, driven by a shift in the mycorrhizal type of vegetation, that potentially mediates changes in aerobic decomposition during postdrainage succession. Such feedback may have long-term legacy effects upon postdrainage restoration efforts and implication for tree encroachment onto carbon-rich soils globally.

Evidence for older carbon loss with lowered water tables and changing plant functional groups in peatlands.

A small imbalance in plant productivity and decomposition accounts for the carbon (C) accumulation capacity of peatlands. As climate changes, the continuity of peatland net C storage relies on rising primary production to offset increasing ecosystem respiration (ER) along with the persistence of older C in waterlogged peat. A lowering in the water table position in peatlands often increases decomposition rates, but concurrent plant community shifts can interactively alter ER and plant productivity responses. The combined effects of water table variation and plant communities on older peat C loss are unknown. We used a full-factorial 1-m3 mesocosm array with vascular plant functional group manipulations (Unmanipulated Control, Sedge only, and Ericaceous only) and water table depth (natural and lowered) treatments to test the effects of plants and water depth on CO2 fluxes, decomposition, and older C loss. We used Δ14 C and δ13 C of ecosystem CO2 respiration, bulk peat, plants, and porewater dissolved inorganic C to construct mixing models partitioning ER among potential sources. We found that the lowered water table treatments were respiring C fixed before the bomb spike (1955) from deep waterlogged peat. Lowered water table Sedge treatments had the oldest dissolved inorganic 14 C signature and the highest proportional peat contribution to ER. Decomposition assays corroborated sustained high rates of decomposition with lowered water tables down to 40 cm below the peat surface. Heterotrophic respiration exceeded plant respiration at the height of the growing season in lowered water table treatments. Rates of gross primary production were only impacted by vegetation, whereas ER was affected by vegetation and water table depth treatments. The decoupling of respiration and primary production with lowered water tables combined with older C losses suggests that climate and land-use-induced changes in peatland hydrology can increase the vulnerability of peatland C stores.

Long-Term Experimental Manipulation of Atmospheric Sulfate Deposition to a Peatland: Response of Methylmercury and Related Solute Export in Streamwater.

Changes in sulfate (SO42-) deposition have been linked to changes in mercury (Hg) methylation in peatlands and water quality in freshwater catchments. There is little empirical evidence, however, of how quickly methyl-Hg (MeHg, a bioaccumulative neurotoxin) export from catchments might change with declining SO42- deposition. Here, we present responses in total Hg (THg), MeHg, total organic carbon, pH, and SO42- export from a peatland-dominated catchment as a function of changing SO42- deposition in a long-term (1998-2011), whole-ecosystem, control-impact experiment. Annual SO42- deposition to half of a 2-ha peatland was experimentally increased 6-fold over natural levels and then returned to ambient levels in two phases. Sulfate additions led to a 5-fold increase in monthly flow-weighted MeHg concentrations and yields relative to a reference catchment. Once SO42- additions ceased, MeHg concentrations in the outflow streamwater returned to pre-SO42- addition levels within 2 years. The decline in streamwater MeHg was proportional to the change in the peatland area no longer receiving experimental SO42- inputs. Importantly, net demethylation and increased sorption to peat hastened the return of MeHg to baseline levels beyond purely hydrological flushing. Overall, we present clear empirical evidence of rapid and proportionate declines in MeHg export from a peatland-dominated catchment when SO42- deposition declines.

Flooding tolerance of four tropical peatland tree species in a nursery trial.

In order to facilitate hydrological restoration, initiatives have been conducted to promote tree growth in degraded and rewetted peatlands in Indonesia. For these initiatives to be successful, tree seedlings need to be able to survive flooding episodes, with or without shade. We investigated the survival rates and the formation of adventitious roots in the case of four tree species exposed to combinations of different shading and water levels under controlled conditions in a nursery, with artificial rainwater and with peat soil as the medium. The research focused on the following questions (i) whether trees can grow on flooded peat soils; and (ii) which plant traits allow plants to cope with inundation, with or without shade. The four tree species compared (Shorea balangeran, Cratoxylum arborescens, Nephelium lappaceum and Durio zibethinus) include two natural pioneer and two farmer-preferred fruit trees. The experiment used a split-split plot design with 48 treatment combinations and at least 13 tree-level replicates. The study found that S. balangeran and C. arborescens had relatively high survival rates and tolerated saturated condition for 13 weeks, while N. lappaceum and D. zibethinus required non-saturated peat conditions. S. balangeran and C. arborescens developed adventitious roots to adapt to the inundated conditions. D. zibethinus, S. balangeran and N. lappaceum grew best under moderate (30%) shading levels, while C. arborescent grew best in full sunlight.

Role of Ester Sulfate and Organic Disulfide in Mercury Methylation in Peatland Soils.

We examined the composition and spatial correlation of sulfur and mercury pools in peatland soil profiles by measuring sulfur speciation by 1s X-ray absorption near-edge structure spectrocopy and mercury concentrations by cold vapor atomic fluorescence spectroscopy. Also investigated were the methylation/demethylation rate constants and the presence of hgcAB genes with depth. Methylmercury (MeHg) concentration and organic disulfide were spatially correlated and had a significant positive correlation (p < 0.05). This finding is consistent with these species being products of dissimilatory sulfate reduction. Conversely, a significant negative correlation between organic monosulfides and MeHg was observed, which is consistent with a reduction in Hg(II) bioavailability via complexation reactions. Finally, a significant positive correlation between ester sulfate and instantaneous methylation rate constants was observed, which is consistent with ester sulfate being a substrate for mercury methylation via dissimilatory sulfate reduction. Our findings point to the importance of organic sulfur species in mercury methylation processes, as substrates and products, as well as potential inhibitors of Hg(II) bioavailability. For a peatland system with sub-µmol L-1 porewater concentrations of sulfate and hydrogen sulfide, our findings indicate that the solid-phase sulfur pools, which have a much larger sulfur concentration range, may be accessible to microbial activity or exchanging with the porewater.

Warming drives a 'hummockification' of microbial communities associated with decomposing mycorrhizal fungal necromass in peatlands.

Dead fungal mycelium (necromass) represents a critical component of soil carbon (C) and nutrient cycles. Assessing how the microbial communities associated with decomposing fungal necromass change as global temperatures rise will help in determining how these belowground organic matter inputs contribute to ecosystem responses. In this study, we characterized the structure of bacterial and fungal communities associated with multiple types of decaying mycorrhizal fungal necromass incubated within mesh bags across a 9°C whole ecosystem temperature enhancement in a boreal peatland. We found major taxonomic and functional shifts in the microbial communities present on decaying mycorrhizal fungal necromass in response to warming. These changes were most pronounced in hollow microsites, which showed convergence towards the necromass-associated microbial communities present in unwarmed hummocks. We also observed a high colonization of ericoid mycorrhizal fungal necromass by fungi from the same genera as the necromass. These results indicate that microbial communities associated with mycorrhizal fungal necromass decomposition are likely to change significantly with future climate warming, which may have strong impacts on soil biogeochemical cycles in peatlands. Additionally, the high enrichment of congeneric fungal decomposers on ericoid mycorrhizal necromass may help to explain the increase in ericoid shrub dominance in warming peatlands.

Peatland microbial community responses to plant functional group and drought are depth-dependent.

Peatlands store one-third of Earth's soil carbon, the stability of which is uncertain due to climate change-driven shifts in hydrology and vegetation, and consequent impacts on microbial communities that mediate decomposition. Peatland carbon cycling varies over steep physicochemical gradients characterizing vertical peat profiles. However, it is unclear how drought-mediated changes in plant functional groups (PFGs) and water table (WT) levels affect microbial communities at different depths. We combined a multiyear mesocosm experiment with community sequencing across a 70-cm depth gradient, to test the hypotheses that vascular PFGs (Ericaceae vs. sedges) and WT (high vs. low) structure peatland microbial communities in depth-dependent ways. Several key results emerged. (i) Both fungal and prokaryote (bacteria and archaea) community structure shifted with WT and PFG manipulation, but fungi were much more sensitive to PFG whereas prokaryotes were much more sensitive to WT. (ii) PFG effects were largely driven by Ericaceae, although sedge effects were evident in specific cases (e.g., methanotrophs). (iii) Treatment effects varied with depth: the influence of PFG was strongest in shallow peat (0-10, 10-20 cm), whereas WT effects were strongest at the surface and middle depths (0-10, 30-40 cm), and all treatment effects waned in the deepest peat (60-70 cm). Our results underline the depth-dependent and taxon-specific ways that plant communities and hydrologic variability shape peatland microbial communities, pointing to the importance of understanding how these factors integrate across soil profiles when examining peatland responses to climate change.

Impacts of historical ditching on peat volume and carbon in northern Minnesota USA peatlands.

Peatlands play a critical role in terrestrial carbon (C) storage, containing an estimated 30% of global soil C, despite occupying only 3% of global land area. Historic management of peatlands has led to widespread degradation and loss of important ecosystem services, including C sequestration. Legacy drainage features in the peatlands of northern Minnesota, USA were studied to assess the volume of peat and the amount of C lost in the ~100 years since drainage. Using high-resolution Light Detection and Ranging (LiDAR) data, we measured elevation changes adjacent to legacy ditches to model pre-ditch surface elevations, which were used to calculate peat volume loss. We established relationships between volume loss and site characteristics from existing geographic information systems datasets and used those relationships to scale volume loss to all mapped peatland ditches in northern Minnesota (USA). We estimated that 0.165 ± 0.009 km3 of peat have been lost along almost 4000 km of peatland ditches. Peat loss upslope of ditches was significantly less than downslope (P < 0.001). Mean width of the entire ditch-effect zone was 333 ± 8.32 m. Using our volume loss estimates, literature estimates of oxidation, and mean bulk density and peat C% values from Minnesota peatlands, we calculate a total historic loss 3.847 ± 0.364 Tg C. Assuming a constant oxidation rate during the 100 years since drainage, euic and dysic peatlands within the ditch effect zone have lost 0.26 ± 0.08 and 0.40 ± 0.13 Mg C ha-1 yr-1, respectively, comparable to IPCC estimates. Our spatially-explicit peat loss estimates could be incorporated into decision support tools to inform management decisions regarding peatland C and other ecosystem services.

Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment.

In this study, a suite of complementary environmental geochemical analyses, including NMR and gas chromatography-mass spectrometry (GC-MS) analyses of central metabolites, Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) of secondary metabolites, and lipidomics, was used to investigate the influence of organic matter (OM) quality on the heterotrophic microbial mechanisms controlling peatland CO2, CH4, and CO2:CH4 porewater production ratios in response to climate warming. Our investigations leverage the Spruce and Peatland Responses under Changing Environments (SPRUCE) experiment, where air and peat warming were combined in a whole-ecosystem warming treatment. We hypothesized that warming would enhance the production of plant-derived metabolites, resulting in increased labile OM inputs to the surface peat, thereby enhancing microbial activity and greenhouse gas production. Because shallow peat is most susceptible to enhanced warming, increases in labile OM inputs to the surface, in particular, are likely to result in significant changes to CO2 and CH4 dynamics and methanogenic pathways. In support of this hypothesis, significant correlations were observed between metabolites and temperature consistent with increased availability of labile substrates, which may stimulate more rapid turnover of microbial proteins. An increase in the abundance of methanogenic genes in response to the increase in the abundance of labile substrates was accompanied by a shift toward acetoclastic and methylotrophic methanogenesis. Our results suggest that as peatland vegetation trends toward increasing vascular plant cover with warming, we can expect a concomitant shift toward increasingly methanogenic conditions and amplified climate-peatland feedbacks.

Biases in open-path carbon dioxide flux measurements: Roles of instrument surface heat exchange and analyzer temperature sensitivity.

Eddy covariance (EC) measurements of ecosystem-atmosphere carbon dioxide (CO2) exchange provide the most direct assessment of the terrestrial carbon cycle. Measurement biases for open-path (OP) CO2 concentration and flux measurements have been reported for over 30 years, but their origin and appropriate correction approach remain unresolved. Here, we quantify the impacts of OP biases on carbon and radiative forcing budgets for a sub-boreal wetland. Comparison with a reference closed-path (CP) system indicates that a systematic OP flux bias (0.54 µmol m-2 s-1) persists for all seasons leading to a 110% overestimate of the ecosystem CO2 sink (cumulative error of 78 gC m-2). Two potential OP bias sources are considered: Sensor-path heat exchange (SPHE) and analyzer temperature sensitivity. We examined potential OP correction approaches including: i) Fast temperature measurements within the measurement path and sensor surfaces; ii) Previously published parameterizations; and iii) Optimization algorithms. The measurements revealed year-round average temperature and heat flux gradients of 2.9 °C and 16 W m-2 between the bottom sensor surfaces and atmosphere, indicating SPHE-induced OP bias. However, measured SPHE correlated poorly with the observed differences between OP and CP CO2 fluxes. While previously proposed nominally universal corrections for SPHE reduced the cumulative OP bias, they led to either systematic under-correction (by 38.1 gC m-2) or to systematic over-correction (by 17-37 gC m-2). The resulting budget errors exceeded CP random uncertainty and change the sign of the overall carbon and radiative forcing budgets. Analysis of OP calibration residuals as a function of temperature revealed a sensitivity of 5 µmol m-3 K-1. This temperature sensitivity causes CO2 calibration errors proportional to sample air fluctuations that can offset the observed growing season flux bias by 50%. Consequently, we call for a new OP correction framework that characterizes SPHE- and temperature-induced CO2 measurement errors.

Aircraft-based inversions quantify the importance of wetlands and livestock for Upper Midwest methane emissions.

We apply airborne measurements across three seasons (summer, winter and spring 2017-2018) in a multi-inversion framework to quantify methane emissions from the US Corn Belt and Upper Midwest, a key agricultural and wetland source region. Combing our seasonal results with prior fall values we find that wetlands are the largest regional methane source (32 %, 20 [16-23] Gg/d), while livestock (enteric/manure; 25 %, 15 [14-17] Gg/d) are the largest anthropogenic source. Natural gas/petroleum, waste/landfills, and coal mines collectively make up the remainder. Optimized fluxes improve model agreement with independent datasets within and beyond the study timeframe. Inversions reveal coherent and seasonally dependent spatial errors in the WetCHARTs ensemble mean wetland emissions, with an underestimate for the Prairie Pothole region but an overestimate for Great Lakes coastal wetlands. Wetland extent and emission temperature dependence have the largest influence on prediction accuracy; better representation of coupled soil temperature-hydrology effects is therefore needed. Our optimized regional livestock emissions agree well with the Gridded EPA estimates during spring (to within 7 %) but are ∼25 % higher during summer and winter. Spatial analysis further shows good top-down and bottom-up agreement for beef facilities (with mainly enteric emissions) but larger (∼30 %) seasonal discrepancies for dairies and hog farms (with >40 % manure emissions). Findings thus support bottom-up enteric emission estimates but suggest errors for manure; we propose that the latter reflects inadequate treatment of management factors including field application. Overall, our results confirm the importance of intensive animal agriculture for regional methane emissions, implying substantial mitigation opportunities through improved management.

Restoring open canopy pine barrens from the ground up: Repeated burns correspond with increased soil hydraulic conductivity.

Prescribed fire is widely used for ecosystem restoration, yet the mechanisms that determine its effectiveness remain poorly characterized. Because soil hydrology influences ecosystem processes like erosion, runoff, and plant competition, it is important to understand how fire affects soil hydrology. A systematic approach to understanding relationships among vegetation, topography, and fire is needed to advance knowledge of how fire influences soil properties that in turn affect restoration success. Our objective was to characterize relationships among burn severity, vegetation, and soil hydrology in a heterogenous landscape under restoration management. Our study took place in a barrens-forest mosaic with recent prescribed fire history ranging from 0 to 10 burns since 1960, and additional variation in fuel loading, burn severity, vegetation cover, topography, and soils. We measured soil hydraulic conductivity (SHC) during two consecutive years, which represented control, prefire, postfire, and 1-year postfire conditions. Regression tree analysis identified an important threshold effect of antecedent soil moisture on SHC; soils with initial moisture < 13% had lower SHC than soils with initial moisture > 13%. Furthermore, above this threshold, sites with intermediate to high recent burn frequency (4-10 burns) had significantly greater SHC than unburned control sites. High fuel loads associated with brush cutting and piling increased SHC at barrens sites but not brush or pine sites, suggesting an interaction between vegetation cover and fire effects on SHC. At the local hillslope scale, toe-slopes had greater SHC than summits. Our results suggest that repeated prescribed fires of moderate to high frequency may enhance SHC, thereby reducing soil water retention and potentially restoring functional pine barren processes that limit woody plant growth. Prescribed fire may therefore be an important management tool for reversing mesophication and restoring a global array of open canopy ecosystems.

Mercury dynamics in the pore water of peat columns during experimental freezing and thawing.

Biogeochemical processes in northern peatland ecosystems are influenced by seasonal temperature fluctuations that are changing with the climate. Methylmercury (MeHg), commonly produced in peatlands, affects downstream waters; therefore, it is important to understand how temperature transitions affect mercury (Hg) dynamics. We investigated how the freeze-thaw cycle influences belowground peat pore water total Hg (THg), MeHg, and dissolved organic carbon (DOC). Four large, intact peat columns were removed from an ombrotrophic peat bog and experimentally frozen and thawed. Pore water was sampled across seven depths in the peat columns during the freeze-thaw cycle and analyzed for THg, MeHg, and DOC concentrations. Freezing results showed increased concentrations of THg below the ice layers and limited change in MeHg concentrations. During thawing, THg concentrations significantly increased, whereas MeHg concentrations decreased. Limited bromide movement and depth decreases in THg and DOC concentrations were associated with increased bulk density and degree of humification in the peat. The experiment demonstrates the effects of the freeze-thaw cycle on Hg concentrations in northern peatlands. Changes to freeze-thaw cycles with climate change may exacerbate Hg cycling and transport processes in peatland environments.

Climate Sensitivity of Peatland Methane Emissions Mediated by Seasonal Hydrologic Dynamics.

Peatlands are among the largest natural sources of atmospheric methane (CH4) worldwide. Peatland emissions are projected to increase under climate change, as rising temperatures and shifting precipitation accelerate microbial metabolic pathways favorable for CH4 production. However, how these changing environmental factors will impact peatland emissions over the long term remains unknown. Here, we investigate a novel data set spanning an exceptionally long 11 years to analyze the influence of soil temperature and water table elevation on peatland CH4 emissions. We show that higher water tables dampen the springtime increases in CH4 emissions as well as their subsequent decreases during late summer to fall. These results imply that any hydroclimatological changes in northern peatlands that shift seasonal water availability from winter to summer will increase annual CH4 emissions, even if temperature remains unchanged. Therefore, advancing hydrological understanding in peatland watersheds will be crucial for improving predictions of CH4 emissions.

Impacts of experimental alteration of water table regime and vascular plant community composition on peat mercury profiles and methylmercury production.

Climate change is expected to alter the hydrology and vascular plant communities in peatland ecosystems. These changes may have as yet unexplored impacts on peat mercury (Hg) concentrations and net methylmercury (MeHg) production. In this study, peat was collected from PEATcosm, an outdoor, controlled mesocosm experiment where peatland water table regimes and vascular plant functional groups were manipulated over several years to simulate potential climate change effects. Potential Hg(II) methylation and MeHg demethylation rate constants were assessed using enriched stable isotope incubations at the end of the study in 2015, and ambient peat total Hg (THg) and MeHg concentration depth profiles were tracked annually from 2011 to 2014. Peat THg and MeHg concentrations and the proportion of THg methylated (%MeHg) increased significantly within the zone of water table fluctuation when water tables were lowered, but potential Hg(II) methylation rate constants were similar regardless of water table treatment. When sedges dominate over ericaceous shrubs, MeHg concentrations and %MeHg became significantly elevated within the sedge rooting zone. Increased desorption of Hg(II) and MeHg from the solid phase peat into pore water occurred with a lowered water table and predominant sedge cover, likely due to greater aerobic peat decomposition. Deeper, more variable water tables and a transition to sedge-dominated communities coincided with increased MeHg accumulation within the zone of water table fluctuation. Sustained high water tables promoted the net downward migration of Hg(II) and MeHg. The simultaneous decrease in Hg(II) and MeHg concentrations in the near-surface peat and accumulation deeper in the peat profile, combined with the trends in Hg(II) and MeHg partitioning to mobile pore waters, suggest that changes to peatland hydrology and vascular plant functional groups redistribute peat Hg(II) and MeHg via vertical hydrochemical transport mechanisms.

Melanin mitigates the accelerated decay of mycorrhizal necromass with peatland warming.

Despite being a significant input into soil carbon pools of many high-latitude ecosystems, little is known about the effects of climate change on the turnover of mycorrhizal fungal necromass. Here, we present results from the first experiment examining the effects of climate change on the long-term decomposition of mycorrhizal necromass, utilising the Spruce and Peatland Response Under Changing Environments (SPRUCE) experiment. Warming significantly increased necromass decomposition rates but was strongest in normally submerged microsites where warming caused water table drawdown. Necromass chemistry exerted the strongest control on the decomposition, with initial nitrogen content strongly predicting early decay rates (3 months) and initial melanin content determining mass remaining after 2 years. Collectively, our results suggest that as global temperatures rise, variation in species biochemical traits as well as microsites where mycorrhizal necromass is deposited will determine how these important inputs contribute to the belowground storage of carbon in boreal peatlands.

Error characterization of methane fluxes and budgets derived from a long-term comparison of open- and closed-path eddy covariance systems.

Wetlands represent the dominant natural source of methane (CH4) to the atmosphere. Thus, substantial effort has been spent examining the CH4 budgets of global wetlands via continuous ecosystem-scale measurements using the eddy covariance (EC) technique. Robust error characterization for such measurements, however, remains a major challenge. Here, we quantify systematic, random and gap-filling errors and the resulting uncertainty in CH4 fluxes using a 3.5 year time series of simultaneous open- and closed path CH4 flux measurements over a sub-boreal wetland. After correcting for high- and low frequency flux attenuation, the magnitude of systematic frequency response errors were negligible relative to other uncertainties. Based on three different random flux error estimations, we found that errors of the CH4 flux measurement systems were smaller in magnitude than errors associated with the turbulent transport and flux footprint heterogeneity. Errors on individual half-hourly CH4 fluxes were typically 6%-41%, but not normally distributed (leptokurtic), and thus need to be appropriately characterized when fluxes are compared to chamber-derived or modeled CH4 fluxes. Integrated annual fluxes were only moderately sensitive to gap-filling, based on an evaluation of 4 different methods. Calculated budgets agreed on average to within 7% (≤ 1.5 g - CH4 m-2 yr-1). Marginal distribution sampling using open source code was among the best-performing of all the evaluated gap-filling approaches and it is therefore recommended given its transparency and reproducibility. Overall, estimates of annual CH4 emissions for both EC systems were in excellent agreement (within 0.6 g - CH4 m-2 yr-1) and averaged 18 g - CH4 m-2 yr-1. Total uncertainties on the annual fluxes were larger than the uncertainty of the flux measurement systems and estimated between 7-17%. Identifying trends and differences among sites or site years requires that the observed variability exceeds these uncertainties.

Temporal fluctuations in young-of-the-year yellow perch mercury bioaccumulation in lakes of northeastern Minnesota.

Identifying what determines fish mercury (Hg) bioaccumulation remains a key scientific challenge. While there has been substantial research on spatial variation in fish Hg bioaccumulation, the factors that influence temporal fluctuations in fish Hg have received less attention to date. In this study, we built upon a growing body of research investigating young-of-the-year (YOY) yellow perch Hg bioaccumulation and investigated annual fluctuations in YOY yellow perch Hg in six lakes in northeastern Minnesota over eight years. After accounting for spatial variation between the study lakes, we used model averaging to identify the lake physiochemical and climate factors that best explain temporal variation in fish biomass and fish Hg. Fish biomass of YOY yellow perch had a positive relationship with chlorophyll-α and total Kjeldahl nitrogen and a negative relationship with dissolved iron and dissolved oxygen. There was a positive relationship between annual variation in yellow perch Hg concentration and annual variation in lake total suspended solids, dissolved Fe and pH. Additionally, there was a negative relationship between fish Hg concentration and lake total Kjeldahl nitrogen and growing degree days. Together, our results suggest that annual variation in allochthonous inputs from the watershed, in-lake processes, and climate variables can explain temporal patterns in Hg bioaccumulation and growth biodilution is an important process controlling yellow perch Hg concentrations.