Generation of adenosyl radical from S-adenosylmethionine (SAM) in biotin synthase.

A mechanism of the C-S bond activation of S-adenosylmethionine (SAM) in biotin synthase is discussed from quantum mechanical/molecular mechanical (QM/MM) computations. The active site of the enzyme involves a [4Fe-4S] cluster, which is coordinated to the COO(-) and NH(2) groups of the methionine moiety of SAM. The unpaired electrons on the iron atoms of the [4Fe-4S](2+) cluster are antiferromagnetically coupled, resulting in the S=0 ground spin state. An electron is transferred from an electron donor to the [4Fe-4S](2+)-SAM complex to produce the catalytically active [4Fe-4S](+) state. The SOMO of the [4Fe-4S](+)-SAM complex is localized on the [4Fe-4S] moiety and the spin density of the [4Fe-4S] core is calculated to be 0.83. The C-S bond cleavage is associated with the electron transfer from the [4Fe-4S](+) cluster to the antibonding σ* C-S orbital. The electron donor and acceptor states are effectively coupled with each other at the transition state for the C-S bond cleavage. The activation barrier is calculated to be 16.0 kcal/mol at the QM (B3LYP/SV(P))/MM (CHARMm) level of theory and the C-S bond activation process is 17.4 kcal/mol exothermic, which is in good agreement with the experimental observation that the C-S bond is irreversibly cleaved in biotin synthase. The sulfur atom of the produced methionine molecule is unlikely to bind to an iron atom of the [4Fe-4S](2+) cluster after the C-S bond cleavage from the energetical and structural points of view.

Molybdenum-catalyzed transformation of molecular dinitrogen into silylamine: experimental and DFT study on the remarkable role of ferrocenyldiphosphine ligands.

A molybdenum-dinitrogen complex bearing two ancillary ferrocenyldiphosphine ligands, trans-[Mo(N(2))(2)(depf)(2)] (depf = 1,1'-bis(diethylphosphino)ferrocene), catalyzes the conversion of molecular dinitrogen (N(2)) into silylamine (N(SiMe(3))(3)), which can be readily converted into NH(3) by acid treatment. The conversion has been achieved in the presence of Me(3)SiCl and Na at room temperature with a turnover number (TON) of 226 for the N(SiMe(3))(3) generation for 200 h. This TON is significantly improved relative to those ever reported by Hidai's group for mononuclear molybdenum complexes having monophosphine coligands [J. Am. Chem. Soc.1989, 111, 1939]. Density functional theory (DFT) calculations have been performed to figure out the mechanism of the catalytic N(2) conversion. On the basis of some pieces of experimental information, SiMe(3) radical is assumed to serve as an active species in the catalytic cycle. Calculated results also support that SiMe(3) radical is capable of working as an active species. The formation of five-coordinate intermediates, in which one of the N(2) ligands or one of the Mo-P bonds is dissociated, is essential in an early stage of the N(2) conversion. The SiMe(3) addition to a "hydrazido(2-)" intermediate having the NN(SiMe(3))(2) group will give a "hydrazido(1-)" intermediate having the (Me(3)Si)NN(SiMe(3))(2) group rather than a pair of a nitrido (≡N) intermediate and N(SiMe(3))(3). The N(SiMe(3))(3) generation would not occur at the Mo center but proceed after the (Me(3)Si)NN(SiMe(3))(2) group is released from the Mo center. The flexibility of the Mo-P bond between Mo and depf would play a vital role in the high catalysis of the Mo-Fe complex.

How axial ligands control the reactivity of high-valent iron(IV)-oxo porphyrin pi-cation radicals in alkane hydroxylation: a computational study.

The push effect of anionic axial ligands of high-valent iron(IV)-oxo porphyrin pi-cation radicals, (Porp)(+.)Fe(IV)(O)(X) (X=OH(-), AcO(-), Cl(-), and CF(3)SO(3)(-)), in alkane hydroxylation is investigated by B3LYP DFT calculations. The electron-donating ability of anionic axial ligands influences the activation energy for the alkane hydroxylation by the iron(IV)-oxo intermediates and the Fe-O bond distance of the iron-oxo species in transition state.

Participation of multioxidants in the pH dependence of the reactivity of ferrate(VI).

Alcohol oxidation by ferrate (FeO(4)(2)(-)) in water is investigated from B3LYP density functional theory calculations in the framework of polarizable continuum model. The oxidizing power of three species, nonprotonated, monoprotonated, and diprotonated ferrates, was evaluated. The LUMO energy levels of nonprotonated and monoprotonated ferrates are greatly reduced by solvent effects, and as a result the oxidizing power of these two species is increased enough to effectively mediate a hydrogen-atom abstraction from the C-H and O-H bonds of methanol. The oxidizing power of these oxidants increases in the order nonprotonated ferrate < monoprotonated ferrate < diprotonated ferrate. The reaction pathway is initiated by C-H bond activation, followed by the formation of a hydroxymethyl radical intermediate or an organometallic intermediate with an Fe-C bond. Kinetic aspects of this reaction are analyzed from calculated energy profiles and experimentally known pK(a) values. The pH dependence of this reaction in water is explained well in terms of a multioxidant scheme.