Application of Recurrence Plot Analysis to Examine Dynamics of Biological Molecules on the Example of Aggregation of Seed Mucilage Components.

The goal of the research is to describe the aggregation process inside the mucilage produced by plant seeds using molecular dynamics (MD) combined with time series algorithmic analysis based on the recurrence plots. The studied biological molecules model is seed mucilage composed of three main polysaccharides, i.e. pectins, hemicellulose, and cellulose. The modeling of biological molecules is based on the assumption that a classical-quantum passage underlies the aggregation process in the mucilage, resulting from non-covalent interactions, as they affect the macroscopic properties of the system. The applied recurrence plot approach is an important tool for time series analysis and data mining dedicated to analyzing time series data originating from complex, chaotic systems. In the current research, we demonstrated that advanced algorithmic analysis of seed mucilage data can reveal some features of the dynamics of the system, namely temperature-dependent regions with different dynamics of increments of a number of hydrogen bonds and regions of stable oscillation of increments of a number of hydrophobic-polar interactions. Henceforth, we pave the path for automatic data-mining methods for the analysis of biological molecules with the intermediate step of the application of recurrence plot analysis, as the generalization of recurrence plot applications to other (biological molecules) datasets is straightforward.

Localization of Sesquiterpene Lactones Biosynthesis in Flowers of Arnica Taxa.

Arnica montana is a valuable plant with high demand on the pharmaceutical and cosmetic market due to the presence of helenalin (H) and 11α, 13-dihydrohelenalin (DH) sesquiterpene lactones (SLs), with many applications and anti-inflammatory, anti-tumor, analgesic and other properties. Despite the great importance of these compounds for the protection of the plant and their medicinal value, the content of these lactones and the profile of the compounds present within individual elements of florets and flower heads have not been studied so far, and attempts to localize these compounds in flower tissues have also not been conducted. The three studied Arnica taxa synthesize SLs only in the aerial parts of plants, and the highest content of these substances was found in A. montana cv. Arbo; it was lower in wild species, and a very small amount of H was produced by A. chamissonis. Analysis of dissected fragments of whole inflorescences revealed a specific distribution pattern of these compounds. The lactones content in single florets increased from the top of the corolla to the ovary, with the pappus calyx being a significant source of their production. Histochemical tests for terpenes and methylene ketones indicated the colocalization of lactones with inulin vacuoles.

Plant Seed Mucilage as a Glue: Adhesive Properties of Hydrated and Dried-in-Contact Seed Mucilage of Five Plant Species.

Seed and fruit mucilage is composed of three types of polysaccharides-pectins, cellulose, and hemicelluloses-and demonstrates adhesive properties after hydration. One of the important functions of the mucilage is to enable seeds to attach to diverse natural surfaces. Due to its adhesive properties, which increase during dehydration, the diaspore can be anchored to the substrate (soil) or attached to an animal's body and dispersed over varied distances. After complete desiccation, the mucilage envelope forms a thin transparent layer around the diaspore creating a strong bond to the substrate. In the present study, we examined the mucilaginous seeds of six different plant taxa (from genera Linum, Lepidium, Ocimum, Salvia and Plantago) and addressed two main questions: (1) How strong is the adhesive bond of the dried mucilage envelope? and (2) What are the differences in adhesion between different mucilage types? Generally, the dried mucilage envelope revealed strong adhesive properties. Some differences between mucilage types were observed, particularly in relation to adhesive force (Fad) whose maximal values varied from 0.58 to 6.22 N. The highest adhesion force was revealed in the cellulose mucilage of Ocimum basilicum. However, mucilage lacking cellulose fibrils, such as that of Plantago ovata, also demonstrated high values of adhesion force with a maximum close to 5.74 N. The adhesion strength, calculated as force per unit contact area (Fad/A0), was comparable between studied taxa. Obtained results demonstrated (1) that the strength of mucilage adhesive bonds strongly surpasses the requirements necessary for epizoochory and (2) that seed mucilage has a high potential as a nontoxic, natural substance that can be used in water-based glues.

Localization of Phenolic Compounds at an Air-Solid Interface in Plant Seed Mucilage: A Strategy to Maximize Its Biological Function?

Given a low concentration of phenols in the naturally occurring aqueous lubricant (mucilage) from hydrated seeds, their biological functions should be severely limited. Here, we introduce an undisclosed natural strategy that enables maximization of phenolic functions through exposing the phenols at the air-seed solid interface. Our findings not only offer a new perspective on plant reproduction physiology but also provide insights into an innovative design of lubricating biomaterials with additional phenolic functions.

Friction-Active Surfaces Based on Free-Standing Anchored Cellulose Nanofibrils.

A specific feature of fibrous surfaces is the dependence of their mechanical properties on the alignment of the fibers. Vertically aligned fibers enhance friction and adhesion, whereas horizontal fibers are known to act as a lubricant reducing the friction. Many plants form a specific fibrous mucilage cover around their seeds upon hydration. This mucilage consists of cellulose, hemicelluloses, and strongly hydrophilic pectins. We show that the controlled critical-point drying of hydrated seed mucilage of three exemplary seed mucilage-rich plant species results in the exposure of free-standing cellulose nanofibers with a very high aspect ratio and anchored to the seed surface. The structural dimensions of the cellulose nanofibers are similar to the vertically aligned carbon nanotubes and the contact elements in the adhesion system of the gecko that show an outstanding high dry friction and adhesion. Tribological experiments demonstrate very high average friction coefficients when sliding a smooth and stiff probe over the surface of such arrays of dry free-standing cellulose nanofibrils in the range from 1.4 to 1.8. The high friction values most likely arise from bending of the single cellulose fibers and their alignment with the counterpart surface in close contact. We suggest the potential of free-standing cellulose nanofibrils of plant seed mucilage as a natural and ecologically friendly material where high contact forces to surfaces in dry environments are desired.

The micro- and nanoscale spatial architecture of the seed mucilage-Comparative study of selected plant species.

The seed coat mucilage envelope is formed just after hydration and surrounds the seed as a gel-like, transparent capsule. The mucilage envelope represents a special type of modified cell wall with all of the typical polysaccharides i.e. cellulose, pectins and hemicelluloses. The chemical composition of the mucilage is well-recognized but its structural organization remains unclear. In the presented study, we visualized the spatial architecture of the seed mucilage envelope of selected taxa which produce cellulose mucilage. Using critical point drying (CPD) and scanning electron microscopy (SEM) imaging, we demonstrated the structural details of the mucilage from the micro- down to the nanoscale. The mucilage, after CPD, had a visibly spatial structure which differed between the studied taxa; for example, a tangled organization in Arabidopsis thaliana and a more ordered arrangement in Ocimum basilicum were revealed. In general, the mucilaginous fibrillary components formed network made of long, unbranched, thicker cellulose fibrils together with shorter, thinner and, often branched other polysaccharides. Cellulose fibrils built a kind of scaffold for the rest of the components which were spread between them and/or covered their surface. The cellulose fibrils were attached to the seed surface, and therefore prevent the loss of the mucilage envelope during mechanical impacts. The loose architecture and special chemical composition of the mucilaginous cell wall is important for water binding and storage, which are crucial for the proper functioning of the seed mucilage envelope.

Oil Secretory System in Vegetative Organs of Three Arnica Taxa: Essential Oil Synthesis, Distribution and Accumulation.

Arnica, a genus including the medicinal species A. montana, in its Arbo variety, and A. chamissonis, is among the plants richest in essential oils used as pharmaceutical materials. Despite its extensive use, the role of anatomy and histochemistry in the internal secretory system producing the essential oil is poorly understood. Anatomical sections allowed differentiation between two forms of secretory structures which differ according to their distribution in plants. The first axial type is connected to the vascular system of all vegetative organs and forms canals lined with epithelial cells. The second cortical type is represented by elongated intercellular spaces filled with oil formed only between the cortex cells of roots and rhizomes at maturity, with canals lacking an epithelial layer.Only in A. montana rhizomes do secretory structures form huge characteristic reservoirs. Computed tomography illustrates their spatial distribution and fusiform shape. The axial type of root secretory canals is formed at the interface between the endodermis and cortex parenchyma, while, in the stem, they are located in direct contact with veinal parenchyma. The peripheral phloem parenchyma cells are arranged in strands around sieve tube elements which possess a unique ability to accumulate large amounts of oil bodies. The cells of phloem parenchyma give rise to the aforementioned secretory structures while the lipid components (triacylglycerols) stored there support the biosynthesis of essential oils by later becoming a medium in which these oils are dissolved. The results indicate the integrity of axial secretory structures forming a continuous system in vegetative plant organs.

"Sticky invasion" - the physical properties of Plantago lanceolata L. seed mucilage.

The mucilage envelope of seeds has various functions including the provision of different ways for the dispersal of diaspores. Chemical composition and water content of the mucilage yield particular adhesive and frictional properties in the envelope that also influence the dispersal of seeds. To determine the physical properties of Plantago lanceolata seed mucilage we studied (1) composition, (2) desiccation, (3) adhesion, and (4) friction properties of the mucilage under different hydration conditions. We revealed the presence of cellulose fibrils in the mucilage, which are responsible for a continuous and even distribution of the mucilaginous layer on the seed surface. The measured values of adhesive and frictional properties differed significantly in comparison to the previously studied pectic mucilage of Linum usitatissimum. Also, the water loss from the cellulose mucilage was more rapid. The obtained different values can result from the presence of cellulose fibrils and their interaction with pectins in the mucilage. Because of this feature the mucilage of P. lanceolata may represent a more regularly ordered and stabile system than the pectic mucilage of flax, which lacks cellulose. In spite of the fact that P. lanceolata mucilage revealed different adhesive and frictional properties than the pectic mucilage, it still demonstrates an effective system promoting zoochoric seed dispersal. Cellulose may additionally prevent the mucilage against loss from the seed surface.

Slipping vs sticking: water-dependent adhesive and frictional properties of Linum usitatissimum L. seed mucilaginous envelope and its biological significance.

Flax seeds produce mucilage after wetting. The mucilage due to its ability to absorb and maintain water is responsible for specific surface properties which are essential for seed dispersal in different ways. In the present paper, we asked how the hydration level affects the adhesive and frictional properties of the mucilage and which role does the mucilage play in seed dispersal? We have experimentally quantified: (1) desiccation dynamics of seeds with a mucilage envelope, (2) desiccation-time dependence of their friction coefficient, and (3) desiccation-time dependence of their pull-off forces on a smooth glass substrate. Freshly-hydrated seeds had an extremely low friction coefficient, which rapidly increased with an increasing desiccation time. Pull-off force just after hydration was rather low, then increased with an increasing water loss. Adhesion and friction experiments show that there is a clear maximum in the force values at certain hydration states of the mucilage. Different hydration levels of the mucilage can be employed in various dispersal mechanisms. Fully hydrated mucilage with its low viscosity gives optimal sliding conditions for endozoochory, whereas water loss provides conditions for the epizoochory. We suggest that the hydration level of the mucilage envelope can determine the potential mode of flax seed dispersal.

Variation of DNA amount in 47 populations of the subtribe Artemisiinae and related taxa (Asteraceae, Anthemideae): karyological, ecological, and systematic implications.

Genome size has been estimated by flow cytometry in 47 populations of 40 species of the tribe Anthemideae (Asteraceae), mainly from Artemisia and other genera of the subtribe Artemisiinae and related taxa. A range of 2C values from 3.54 to 21.22 pg was found. DNA amount per basic chromosome set ranged from 1.77 to 7.70 pg. First genome size estimates are provided for one subtribe, 10 genera, 32 species, and two subspecies. Nuclear DNA amount correlated well with some karyological, physiological and environmental characters, and has been demonstrated as a useful tool in the interpretation of evolutionary relationships within Artemisia and its close relatives.