Thermochemistry of fluorinated single wall carbon nanotubes.

The gradient corrected Perdew-Burke-Ernzerhof density functional in conjunction with a 3-21G basis set and periodic boundary conditions was employed to investigate the geometries and energies of C(2)F fluorinated armchair single wall carbon nanotubes (F-SWNT's) with diameters ranging from 16.4 to 4.2 A [(12,12) to (3,3)] as well as a C(2)F graphene sheet fluorinated on one side only. Using an isodesmic equation, we find that the thermodynamic stability of F-SWNT's increases with decreasing tube diameter. On the other hand, the mean bond dissociation energies of the C-F bonds increase as the tubes become thinner. The C-F bonds in the (5,5) F-SWNT's are about as strong as those in graphite fluoride (CF)(n)() and are also covalent albeit slightly (<0.04 A) stretched. Whereas a fluorine atom is found not to bind covalently to the concave surface of [60]fullerene, endohedral covalent binding is possible inside a (5,5) SWNT despite a diameter similar to that of the C(60) cage.

Structure and conformational behavior of biopolymers by density functional calculations employing periodic boundary conditions. I. The case of polyglycine, polyalanine, and poly-alpha-aminoisobutyric acid in vacuo.

Fully quantum mechanical calculations exploiting periodic boundary conditions (PBC) have been applied to the study of four different regular structures (alpha- and 3(10)-helix, fully extended and repeated gamma-turns) of the infinite polypeptides of glycine, alanine, and alpha-aminoisobutyric acid (Aib) in vacuo. alpha-Helix is predicted to be the most stable conformer for polyalanine and polyglycine, being stabilized over the 3(10)-helix mainly by more favorable dipole-dipole interactions. Contrary to previous suggestions, steric effects and hydrogen-bond strengths are comparable for both helix structures. 3(10)-Helix is preferred for poly-Aib, since in this case alpha-helix is strongly distorted due to unfavorable intrachain repulsions. Extended structures and repeated gamma-turns are much less stable than helix structures for all of the polypeptides examined, mainly due to the absence of favorable long-range interactions. The optimized geometries are in good agreement with the available experimental data and reveal a remarkable dependence on the nature of the residue forming the polypeptides; at the same time the electronic and structural parameters of each residue strongly depend on the secondary structure of the polypeptides.