Sampling environmental DNA from trees and soil to detect cryptic arboreal mammals.

Environmental DNA (eDNA) approaches to monitoring biodiversity in terrestrial environments have largely focused on sampling water bodies, potentially limiting the geographic and taxonomic scope of eDNA investigations. We assessed the performance of two strictly terrestrial eDNA sampling approaches to detect arboreal mammals, a guild with many threatened and poorly studied taxa worldwide, within two central New Jersey (USA) woodlands. We evaluated species detected with metabarcoding using two eDNA collection methods (tree bark vs. soil sampling), and compared the performance of two detection methods (qPCR vs. metabarcoding) within a single species. Our survey, which included 94 sampling events at 21 trees, detected 16 species of mammals, representing over 60% of the diversity expected in the area. More DNA was found for the 8 arboreal versus 8 non-arboreal species detected (mean: 2466 vs. 289 reads/sample). Soil samples revealed a generally similar composition, but a lower diversity, of mammal species. Detection rates for big brown bat were 3.4 × higher for qPCR over metabarcoding, illustrating the enhanced sensitivity of single-species approaches. Our results suggest that sampling eDNA from on and around trees could serve as a useful new monitoring tool for cryptic arboreal mammal communities globally.

Dogs suppress a pivotal function in the food webs of sandy beaches.

Domestic dogs are the most abundant carnivore globally and have demonstrable negative impacts to wildlife; yet, little evidence regarding their functional roles in natural food webs exists. Adding dogs to food webs may result in a net loss (via suppression of naturally occurring species), net gain (via mesopredator release), or no change (via functional replacement) to ecosystem function. Scavenging is a pivotal function in ecosystems, particularly those that are energetically supported by carrion. Dogs also scavenge on animal carcasses, but whether scavenging by dogs influences the structural and functional properties of food webs remains unclear. Here we used camera traps baited with carrion to test the effect of dogs on the composition and diversity of the vertebrate scavenger guild, as well as carrion detection and consumption rates. We conducted this work in sandy beach ecosystems, which rely on the import of marine organic matter (i.e. stranding of dead marine animals). Diversity of the scavenger community was similar on beaches without dogs. Dogs increased the time it took for carcasses to be detected and decreased the proportion of carrion consumed. This 'dog suppression effect' on scavenging was stronger for nocturnal mammalian scavengers, presumably being driven by indirect trait-mediated effects, which raises further questions about the broader ecological consequences of domestic dogs in natural systems.