Green-house gas fluxes and soil microbial functional genes abundance in saturated and drained peatlands in South-West Iceland.

The drainage of peatlands followed by land use conversion significantly impacts on the fluxes of green-house gases (GHGs, i.e. CO2, CH4, and N2O) to and from the atmosphere, driven by changes in soil properties and microbial communities. In this study, we compared saturated peatlands with drained ones used for sheep grazing or cultivated, which are common in South-West Iceland. These areas exhibit different degrees of soil saturation and nitrogen (N) content, reflecting the anthropic pressure gradient. We aimed at covering knowledge gaps about lack of estimates on N2O fluxes and drainage, by assessing the emissions of GHGs, and the impact of land conversion on these emissions. Moreover, we investigated soil microbial community functional diversity, and its connection with processes contributing to GHGs emission. GHGs emissions differed between saturated and drained peatlands, with increased soil respiration rates (CO2 emissions) and N mineralization (N2O), consistent with the trend of anthropogenic pressure. Drainage drastically reduced methane (CH4) emissions but increased CO2 emissions, resulting in a higher global warming potential (GWP). Cultivation, involving occasional tillage and fertilization, further increased N2O emissions, mediated by higher N availability and conditions favorable to nitrification. Functional genes mirrored the overall trend, showing a shift from prevalent methanogenic archaea (mcrA) in saturated peatlands to nitrifiers (amoA) in drained-cultivated areas. Environmental variables and nutrient content were critical factors affecting community composition in both environments, which overall affected the GHGs emissions and the relative contribution of the three gases.

Decomposition of black pine (Pinus nigra J. F. Arnold) deadwood and its impact on forest soil components.

Deadwood decomposition is a complex and dynamic process with large implications for biogeochemical cycling of carbon (C) and nitrogen (N) in forest soil and litter. Moreover, it affects functional and structural diversity of fungal and bacterial communities in these components. Mesocosms with deadwood blocks at progressive decay classes were set in a black pine forest and incubated for 28 months in the field with the aim to assess the impact of deadwood decomposition on i) CO2, CH4 and N2O fluxes; ii) C and N pools and allocation among deadwood, litter and soil; iii) the fungal and bacterial structural diversity and activity. CO2, CH4 and N2O fluxes from deadwood were monitored throughout the field incubation; deadwood biomass loss and decay rate for each decay class were calculated. The stock of C and N, enzyme activities, fungal and bacterial communities in deadwood, litter fractions (fresh, fragmented and humified) and soil at two depths were measured. Emissions of CO2 and CH4 increased over the deadwood decomposition advancement and the decay reached the maximum rates in the last decomposition classes. N2O fluxes were low and showed either production (prevalent in the first year) or consumption. Independent of the decay class, 20% of C stored in deadwood was lost as CO2 in the atmosphere, whereas 32% was transferred to the fragmented and humified litter fractions in the last decay class. A corresponding increase of cellulose and hemicellulose degrading enzymes was found in deadwood, also favored by substrates accessibility through fragmentation and successional changes in fungal and bacterial communities. Deadwood, litter fractions and soil components were clearly distinguished in terms of chemical and microbiological properties and activities. Fragmented and humified litter fractions were the only components responsive to the advanced stage of deadwood decomposition, being directly affected by the physical redistribution of fragmented organic matter.

Short-term effects of thinning on soil CO2, N2O and CH4 fluxes in Mediterranean forest ecosystems.

In Mediterranean ecosystems an increasing demand for in situ trace gas exchange data is emerging to enhance the adaptation and mitigation strategies under forest degradation. Field-chamber green-house gas fluxes and site characteristics were analysed in two Mediterranean peri-urban pine forests showing degradation symptoms. We examined the effect of different thinning interventions on soil CO2, CH4 and N2O fluxes, addressing the relationships with the environmental variables and C and N contents along forest floor-soil layers. Soil temperature resulted as the main driving variable for CO2 efflux and CH4 uptake. Soil moisture content and organic matter availability affected CO2 emission patterns in the two sites. N2O fluxes showed a positive correlation with soil moisture under wetter climatic conditions only. GHG fluxes showed significant correlations with C and N content of both forest floor and mineral soil, especially in the deepest layers, suggesting that it should be considered, together with environmental variables when accounting GHG fluxes in degraded forests. Short-term effects of thinning on CO2 emissions were dependent on disturbance induced by logging operations and organic matter inputs. After thinning CH4 uptake increased significantly under selective treatment, independently from specific site-induced effects. N2O fluxes were characterized by low emissions in both sites and were not affected by treatments. Soil CO2 efflux was the largest component of global warming potential (GWP) from both sites (11,553 kg ha-1 y-1 on average). Although it has a large global warming potential, N2O contribution to GWP was about 131 kg CO2eq ha-1 y-1. The contribution of CH4-CO2 equivalent to total GWP showed a clear and significant CH4 sink behaviour under selective treatment (36 kg ha-1 y-1 on average). However, in the short-term both thinning approaches produced a weak effect on total GWP.

Effects of soil erosion on agro-ecosystem services and soil functions: A multidisciplinary study in nineteen organically farmed European and Turkish vineyards.

This multidisciplinary research work evaluated the effects of soil erosion on grape yield and quality and on different soil functions, namely water and nutrient supply, carbon sequestration, organic matter recycling, and soil biodiversity, with the aim to understand the causes of soil malfunctioning and work out a proper strategy of soil remediation. Degraded areas in nineteen organically farmed European and Turkish vineyards resulted in producing significantly lower amounts of grapes and excessive concentrations of sugar. Plants suffered from decreased water nutrition, due to shallower rooting depth, compaction, and reduced available water capacity, lower chemical fertility, as total nitrogen and cation exchange capacity, and higher concentration of carbonates. Carbon storage and organic matter recycling were also depressed. The general trend of soil enzyme activity mainly followed organic matter stock. Specific enzymatic activities suggested that in degraded soils, alongside a general slowdown in organic matter cycling, there was a greater reduction in decomposition capacity of the most recalcitrant forms. The abundance of Acari Oribatida and Collembola resulted the most sensitive indicator of soil degradation among the considered microarthropods. No clear difference in overall microbial richness and evenness were observed. All indices were relatively high and indicative of rich occurrence of many and rare microbial species. Dice cluster analyses indicated slight qualitative differences in Eubacterial and fungal community compositions in rhizosphere soil and roots in degraded soils. This multidisciplinary study indicates that the loss of soil fertility caused by excessive earth movement before planting, or accelerated erosion, mainly affects water nutrition and chemical fertility. Biological soil fertility is also reduced, in particular the ability of biota to decompose organic matter, while biodiversity is less affected, probably because of the organic management. Therefore, the restoration of the eroded soils requires site-specific and intensive treatments, including accurately chosen organic matrices for fertilization, privileging the most easily decomposable. Restoring soil fertility in depth, however, remain an open question, which needs further investigation.

How ecosystems change following invasion by Robinia pseudoacacia: Insights from soil chemical properties and soil microbial, nematode, microarthropod and plant communities.

Biological invasions are a global threat to biodiversity. Since the spread of invasive alien plants may have many impacts, an integrated approach, assessing effects across various ecosystem components, is needed for a correct understanding of the invasion process and its consequences. The nitrogen-fixing tree Robinia pseudoacacia (black locust) is a major invasive species worldwide and is used in forestry production. While its effects on plant communities and soils are well known, there have been few studies on soil fauna and microbes. We investigated the impacts of the tree on several ecosystem components, using a multi-trophic approach to combine evidence of soil chemical properties and soil microbial, nematode, microarthropod and plant communities. We sampled soil and vegetation in managed forests, comparing those dominated by black locust with native deciduous oak stands. We found qualitative and quantitative changes in all components analysed, such as the well-known soil nitrification and acidification in stands invaded by black locust. Bacterial richness was the only component favoured by the invasion. On the contrary, abundance and richness of microarthropods, richness of nematodes, and richness and diversity of plant communities decreased significantly in invaded stands. The invasion process caused a compositional shift in all studied biotic communities and in relationships between the different ecosystem components. We obtained clear insights into the effects of invasion of managed native forests by black locust. Our data confirms that the alien species transforms several ecosystem components, modifying the plant-soil community and affecting biodiversity at different levels. Correct management of this aggressive invader in temperate forests is urgently required.

Mixed Nodule Infection in Sinorhizobium meliloti-Medicago sativa Symbiosis Suggest the Presence of Cheating Behavior.

In the symbiosis between rhizobia and legumes, host plants can form symbiotic root nodules with multiple rhizobial strains, potentially showing different symbiotic performances in nitrogen fixation. Here, we investigated the presence of mixed nodules, containing rhizobia with different degrees of mutualisms, and evaluate their relative fitness in the Sinorhizobium meliloti-Medicago sativa model symbiosis. We used three S. meliloti strains, the mutualist strains Rm1021 and BL225C and the non-mutualist AK83. We performed competition experiments involving both in vitro and in vivo symbiotic assays with M. sativa host plants. We show the occurrence of a high number (from 27 to 100%) of mixed nodules with no negative effect on both nitrogen fixation and plant growth. The estimation of the relative fitness as non-mutualist/mutualist ratios in single nodules shows that in some nodules the non-mutualist strain efficiently colonized root nodules along with the mutualist ones. In conclusion, we can support the hypothesis that in S. meliloti-M. sativa symbiosis mixed nodules are formed and allow non-mutualist or less-mutualist bacterial partners to be less or not sanctioned by the host plant, hence allowing a potential form of cheating behavior to be present in the nitrogen fixing symbiosis.

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Microorganisms are vital in mediating the earth's biogeochemical cycles; yet, despite our rapidly increasing ability to explore complex environmental microbial communities, the relationship between microbial community structure and ecosystem processes remains poorly understood. Here, we address a fundamental and unanswered question in microbial ecology: 'When do we need to understand microbial community structure to accurately predict function?' We present a statistical analysis investigating the value of environmental data and microbial community structure independently and in combination for explaining rates of carbon and nitrogen cycling processes within 82 global datasets. Environmental variables were the strongest predictors of process rates but left 44% of variation unexplained on average, suggesting the potential for microbial data to increase model accuracy. Although only 29% of our datasets were significantly improved by adding information on microbial community structure, we observed improvement in models of processes mediated by narrow phylogenetic guilds via functional gene data, and conversely, improvement in models of facultative microbial processes via community diversity metrics. Our results also suggest that microbial diversity can strengthen predictions of respiration rates beyond microbial biomass parameters, as 53% of models were improved by incorporating both sets of predictors compared to 35% by microbial biomass alone. Our analysis represents the first comprehensive analysis of research examining links between microbial community structure and ecosystem function. Taken together, our results indicate that a greater understanding of microbial communities informed by ecological principles may enhance our ability to predict ecosystem process rates relative to assessments based on environmental variables and microbial physiology.

Soil and plant changing after invasion: the case of Acacia dealbata in a Mediterranean ecosystem.

Acacia dealbata Link (Fabaceae) is one of the most invasive species in the Mediterranean ecosystems of Europe, Africa and America, where it has been proved to exert strong effects on soil and plant communities. In Italy A. dealbata has been largely used for ornamental and forestry purpose and is nowadays spreading in several areas. The present study was addressed to evaluate the impacts on soil chemical properties, soil microbial communities and understory plant communities and to assess the relationships among these compartments after the invasion of A. dealbata in a typical Mediterranean shrubland. Towards these aims, a soil and vegetation sampling was performed in Elba Island where A. dealbata is invading the sclerophyllous native vegetation. Three levels of invasion status were differentiated according to the gradient from invaded, to transitional and non-invaded vegetation. Quantitative and qualitative alterations of soil chemical properties and microbial communities (i.e. bacterial and fungal communities) and above-ground understory plant communities were found. In particular, the invaded soils had lower pH values than both the non-invaded and transitional ones. High differences were detected for both the total N and the inorganic fraction (NH4(+) and NO3(-)) contents, which showed the ranking: invaded>transitional>non-invaded soils. TOC and C/N ratio showed respectively higher and lower values in invaded than in non-invaded soils. Total plant covers, species richness and diversity in both the non-invaded and transitional subplots were higher than those in the invaded ones. The contribution of the nitrophilous species was significantly different among the three invasion statuses, with a strong increase going from native to transitional and invaded subplots. All these data confirm that A. dealbata modifies several compartments of the invaded ecosystems, from soil chemical properties to soil and plant microbial communities determining strong changes in the local ecosystem processes.

Global climate change and tree nutrition: effects of elevated CO2 and temperature.

Although tree nutrition has not been the primary focus of large climate change experiments on trees, we are beginning to understand its links to elevated atmospheric CO2 and temperature changes. This review focuses on the major nutrients, namely N and P, and deals with the effects of climate change on the processes that alter their cycling and availability. Current knowledge regarding biotic and abiotic agents of weathering, mobilization and immobilization of these elements will be discussed. To date, controlled environment studies have identified possible effects of climate change on tree nutrition. Only some of these findings, however, were verified in ecosystem scale experiments. Moreover, to be able to predict future effects of climate change on tree nutrition at this scale, we need to progress from studying effects of single factors to analysing interactions between factors such as elevated CO2, temperature or water availability.

Increased nitrogen-use efficiency of a short-rotation poplar plantation in elevated CO(2) concentration.

We estimated nitrogen (N) use by trees of three poplar species exposed for 3 years to free air CO(2) enrichment (FACE) and determined whether the CO(2) treatment affected the future N availability of the plantation. Trees were harvested at the end of the first 3-year rotation and N concentration and content of woody tissues determined. Nitrogen uptake of fine roots and litter was measured throughout the first crop rotation. The results were related to previously published variations in soil N content during the same period. We estimated retranslocation from green leaves and processes determining N mobilization and immobilization, such as mineralization and nitrification, and N immobilization in litter and microbial biomass. In all species, elevated CO(2) concentration ([CO(2)]) significantly increased nitrogen-use efficiency (NUE; net primary productivity per unit of annual N uptake), decreased N concentration in most plant tissues, but did not significantly change cumulative N uptake by trees over the rotation. Total soil N was depleted more in elevated [CO(2)] than in ambient [CO(2)], although not significantly for all soil layers. The effect of elevated [CO(2)] was usually similar for all species, although differences among species were sometimes significant. During the first 3-year rotation, productivity of the plantation remained high in the elevated [CO(2)] treatment. However, we observed a potential reduction in N availability in response to elevated [CO(2)].