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1.
Comput Struct Biotechnol J ; 19: 3372-3383, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34194664

RESUMO

In the wide array of physiological processes, protein-protein interactions and their binding are the most basal activities for achieving adequate biological metabolism. Among the studies on binding proteins, the examination of interactions between immunoglobulin G (IgG) and natural immunoglobulin-binding ligands, such as staphylococcal protein A (spA) and streptococcal protein G (spG), is essential in the development of pharmaceutical science, biotechnology, and affinity chromatography. The widespread utilization of IgG-spA/spG binding characteristics has allowed researchers to investigate these molecular interactions. However, the detailed binding strength of each ligand and the corresponding binding mechanisms have yet to be fully investigated. In this study, the authors analyzed the binding strengths of IgG-spA and IgG-spG complexes and identified the mechanisms enabling these bindings using molecular dynamics simulation, steered molecular dynamics, and advanced Poisson-Boltzmann Solver simulations. Based on the presented data, the binding strength of the spA ligand was found to significantly exceed that of the spG ligand. To find out which non-covalent interactions or amino acid sites have a dominant role in the tight binding of these ligands, further detailed analyses of electrostatic interactions, hydrophobic bonding, and binding free energies have been performed. In investigating their binding affinity, a relatively independent and different unbinding mechanism was found in each ligand. These distinctly different mechanisms were observed to be highly correlated to the protein secondary and tertiary structures of spA and spG ligands, as explicated from the perspective of hydrogen bonding.

2.
Nat Commun ; 12(1): 47, 2021 01 04.
Artigo em Inglês | MEDLINE | ID: mdl-33397938

RESUMO

Controlling ion transport in nanofluidics is fundamental to water purification, bio-sensing, energy storage, energy conversion, and numerous other applications. For any of these, it is essential to design nanofluidic channels that are stable in the liquid phase and enable specific ions to pass. A human neuron is one such system, where electrical signals are transmitted by cation transport for high-speed communication related to neuromorphic computing. Here, we present a concept of neuro-inspired energy harvesting that uses confined van der Waals crystal and demonstrate a method to maximise the ion diffusion flux to generate an electromotive force. The confined nanochannel is robust in liquids as in neuron cells, enabling steady-state ion diffusion for hundred of hours and exhibiting ion selectivity of 95.8%, energy conversion efficiency of 41.4%, and power density of 5.26 W/m2. This fundamental understanding and rational design strategy can enable previously unrealisable applications of passive-type large-scale power generation.

3.
Nano Lett ; 19(12): 8811-8820, 2019 12 11.
Artigo em Inglês | MEDLINE | ID: mdl-31771329

RESUMO

Wetting Na metal on the solid electrolyte of a liquid Na battery determines the operating temperature and performance of the battery. At low temperatures below 200 °C, liquid Na wets poorly on a solid electrolyte near its melting temperature (Tm = 98 °C), limiting its suitability for use in low-temperature batteries used for large-scale energy-storage systems. Herein, we propose the use of sparked reduced graphene oxide (rGO) that can improve the Na wetting in sodium-beta alumina batteries (NBBs), allowing operation at lower temperatures. Experimental and computational studies indicated rGO layers with nanogaps exhibited complete liquid Na wetting regardless of the surface energy between the liquid Na and the graphene oxide, which originated from the capillary force in the gap. Employing sparked rGO significantly enhanced the cell performance at 175 °C; the cell retained almost 100% Coulombic efficiency after the initial cycle, which is a substantial improvement over cells without sparked rGO. These results suggest that coating sparked rGO is a promising but simple strategy for the development of low-temperature NBBs.

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