Spatial and temporal dynamics of ammonia oxidizers in the sediments of the Gulf of Finland, Baltic Sea.

The diversity and dynamics of ammonia-oxidizing bacteria (AOB) and archaea (AOA) nitrifying communities in the sediments of the eutrophic Gulf of Finland (GoF) were investigated. Using clone libraries of ammonia monooxygenase (amoA) gene fragments and terminal restriction fragment length polymorphism (TRFLP), we found a low richness of both AOB and AOA. The AOB amoA phylogeny matched that of AOB 16S ribosomal genes from the same samples. AOA communities were characterized by strong spatial variation while AOB communities showed notable temporal patterns. At open sea sites, where transient anoxic conditions prevail, richness of both AOA and AOB was lowest and communities were dominated by organisms with gene signatures unique to the GoF. Given the importance of nitrification as a link between the fixation of nitrogen and its removal from aquatic environments, the low diversity of ammonia-oxidizing microbes across the GoF could be of relevance for ecosystem resilience in the face of rapid global environmental changes.

Strategies of zooplanktivory shape the dynamics and diversity of littoral plankton communities: a mesocosm approach.

Planktivorous fish can exert strong top-down control on zooplankton communities. By incorporating different feeding strategies, from selective particulate feeding to cruising filter feeding, fish species target distinct prey. In this study, we investigated the effects of two species with different feeding strategies, the three-spined stickleback (Gasterosteus aculeatus (L.)) and roach (Rutilus rutilus (L.)), on a low-diversity brackish water zooplankton community using a 16-day mesocosm experiment. The experiment was conducted on a small-bodied spring zooplankton community in high-nutrient conditions, as well as a large-bodied summer community in low-nutrient conditions. Effects were highly dependent on the initial zooplankton community structure and hence seasonal variation. In a small-bodied community with high predation pressure and no dispersal or migration, the selective particulate-feeding stickleback depleted the zooplankton community and decreased its diversity more radically than the cruising filter-feeding roach. Cladocerans rather than copepods were efficiently removed by predation, and their removal caused altered patterns in rotifer abundance. In a large-bodied summer community with initial high taxonomic and functional diversity, predation pressure was lower and resource availability was high for omnivorous crustaceans preying on other zooplankton. In this community, predation maintained diversity, regardless of predator species. During both experimental periods, predation influenced the competitive relationship between the dominant calanoid copepods, and altered species composition and size structure of the zooplankton community. Changes also occurred to an extent at the level of nontarget prey, such as microzooplankton and rotifers, emphasizing the importance of subtle predation effects. We discuss our results in the context of the adaptive foraging mechanism and relate them to the natural littoral community.

Measuring nitrification in sediments--comparison of two techniques and three 15NO(-)3 measurement methods.

Nitrification is a crucial process in sediment nitrogen cycling. We compared two (15)N tracer-based nitrification measurement techniques (isotope pairing technique (IPT) combined with (15)N nitrate pool dilution and (15)N ammonium oxidation) and three different (15)N analyses from bottom water nitrate (ammonia diffusion, denitrifier and SPINMAS) in a sediment mesocosm. The (15)N nitrate pool dilution technique combined with IPT can be used to quantify the in situ nitrification, but the minimum detection limit for the total nitrification is higher than that in the (15)N ammonium oxidation technique. The (15)N ammonium oxidation technique, however, is not applicable for sediments that have high ammonium content. If nitrate concentration and the amount of (15)N label in the sample are low, the (15)N nitrate analysis should be done with the denitrifier method. In higher (15)N concentrations, the less sensitive SPINMAS method can also be applied. The ammonia diffusion method is not suitable for bottom water (15)N nitrate analyses.

TRUE IDENTITY OF THE EUROPEAN FRESHWATER ULVA (CHLOROPHYTA, ULVOPHYCEAE) REVEALED BY A COMBINED MOLECULAR AND MORPHOLOGICAL APPROACH(1).

A set of 18 freshwater and morphologically similar marine samples of Ulva were collected from inland and coastal waters throughout Europe to assess their taxonomic identity and invasive potential. An additional 11 specimens were obtained from herbaria. The material was studied using a combination of classical morphological methods and molecular techniques; the latter included sequencing of the nuclear internal transcribed spacer (ITS) region (ITS1-5.8S-ITS2) and the chloroplast RUBISCO LSU (rbcL) gene and comparison of the ITS2 secondary structure predictions. Based on classical methods, all the specimens could be determined as U. flexuosa Wulfen and could be further divided into three groups matching three infraspecific taxa. This pattern was generally well supported by molecular phylogenetic analyses. All sequenced samples formed a monophyletic lineage within Ulva, showing a putative synapomorphy in the ITS2 secondary structure. The individual subspecies corresponded to phylogenetic clusters within this lineage. In freshwater habitats, the dominant taxon was U. flexuosa subsp. pilifera, but subsp. paradoxa was also occasionally recorded. In marine habitats, only U. flexuosa subsp. flexuosa and subsp. paradoxa were located. These findings support the view that U. flexuosa subsp. pilifera is primarily a freshwater alga that probably dominates in Europe. As confirmed by the study of herbarium specimens, U. flexuosa should be regarded as indigenous, although it has a tendency to form blooms under certain conditions. Besides clarifying the identity of prevailing European freshwater Ulva, the study provides novel data concerning the distribution and morphological plasticity within the U. flexuosa complex.

Role of sea-ice biota in nutrient and organic material cycles in the northern Baltic Sea.

This paper compiles biological and chemical sea-ice data from three areas of the Baltic Sea: the Bothnian Bay (Hailuoto, Finland), the Bothnian Sea (Norrby, Sweden), and the Gulf of Finland (Tvärminne, Finland). The data consist mainly of field measurements and experiments conducted during the BIREME project from 2003 to 2006, supplemented with relevant published data. Our main focus was to analyze whether the biological activity in Baltic Sea sea-ice shows clear regional variability. Sea-ice in the Bothnian Bay has low chlorophyll a concentrations, and the bacterial turnover rates are low. However, we have sampled mainly land-fast level first-year sea-ice and apparently missed the most active biological system, which may reside in deformed ice (such as ice ridges). Our limited data set shows high concentrations of algae in keel blocks and keel block interstitial water under the consolidated layer of the pressure ridges in the northernmost part of the Baltic Sea. In land-fast level sea-ice in the Bothnian Sea and the Gulf of Finland, the lowermost layer appears to be the center of biological activity, though elevated biomasses can also be found occasionally in the top and interior parts of the ice. Ice algae are light limited during periods of snow cover, and phosphate is generally the limiting nutrient for ice bottom algae. Bacterial growth is evidently controlled by the production of labile dissolved organic matter by algae because low growth rates were recorded in the Bothnian Bay with high concentrations of allochthonous dissolved organic matter. Bacterial communities in the Bothnian Sea and the Gulf of Finland show high turnover rates, and activities comparable with those of open water communities during plankton blooms, which implies that sea-ice bacterial communities have high capacity to process matter during the winter period.