Influence of scat ageing on the gut microbiome: how old is too old?

BACKGROUND: The study of the host-microbiome by the collection of non-invasive samples has the potential to become a powerful tool for conservation monitoring and surveillance of wildlife. However, multiple factors can bias the quality of data recovered from scats, particularly when field-collected samples are used given that the time of defecation is unknown. Previous studies using scats have shown that the impact of aerobic exposure on the microbial composition is species-specific, leading to different rates of change in microbial communities. However, the impact that this aging process has on the relationship between the bacterial and fungal composition has yet to be explored. In this study, we measured the effects of time post-defecation on bacterial and fungal compositions in a controlled experiment using scat samples from the endangered koala (Phascolarctos cinereus). RESULTS: We found that the bacterial composition remained stable through the scat aging process, while the fungal composition did not. The absence of an increase in facultative anaerobes and the stable population of obligate anaerobic bacteria were likely due to our sampling from the inner portion of the scat. We report a cluster of fungal taxa that colonises scats after defecation which can dilute the genetic material from the autochthonous mycoflora and inhibit recovery. CONCLUSION: We emphasize the need to preserve the integrity of scat samples collected in the wild and combat the effects of time and provide strategies for doing so.

Limited effects of traffic noise on behavioural responses to conspecific mating calls in the eastern sedge frog Litoria fallax.

Anthropogenic noise is a pervasive environmental feature across both urban and non-urban habitats and presents a novel challenge especially for acoustically communicating species. While it is known that some species adjust acoustic signals to communicate more effectively in noisy habitats, we know very little about how the receivers of these signals might be impacted by anthropogenic noise. Here, we investigated female and male Litoria fallax frogs' ability to distinguish between high- and low-quality acoustic signals during the presence of background traffic noise and without. We performed a controlled behavioural experiment whereby frogs were presented with simultaneously broadcasted attractive and unattractive calls from opposing directions, once with background traffic noise and once without. We found that females in particular chose the unattractive call significantly more often (and males significantly less often) when noise was being broadcast. This indicates that anthropogenic noise potentially affects receiver responses to acoustic signals, even when calls are not acoustically masked, with potential consequences for maladaptive mating behaviours and population outcomes. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10211-021-00378-7.

Maternal effects and fitness consequences of individual variation in bottlenose dolphins' ecological niche.

The niche describes the ecological and social environment that an organism lives in, as well as the behavioural tactics used to interact with its environment. A species niche is key to both ecological and evolutionary processes, including speciation, and has therefore been a central focus in ecology. Recent evidence, however, points to considerable individual variation in a species' or population's niche use, although how this variation evolves or is maintained remains unclear. We used a large longitudinal dataset to investigate the drivers and maintenance of individual variation in bottlenose dolphins' Tursiops aduncus niche. Specifically, we (a) characterised the extent of individual differences in habitat use, (b) identified whether there were maternal effects associated with this variation and (c) investigated the relationship between habitat use and calving success, a component of reproductive fitness. By examining patterns of habitat use, we provide evidence that individual dolphins vary consistently between one another in their niche. We further show that such individual variation is driven by a strong maternal effect. Finally, habitat use and calving success were not related, suggesting that use of different habitats results in similar fitness outcomes. Niche partitioning, maintained by maternal effects, likely facilitates the coexistence of multiple ecotypes within this population.

Quality and quantity of genetic relatedness data affect the analysis of social structure.

Kinship plays a fundamental role in the evolution of social systems and is considered a key driver of group living. To understand the role of kinship in the formation and maintenance of social bonds, accurate measures of genetic relatedness are critical. Genotype-by-sequencing technologies are rapidly advancing the accuracy and precision of genetic relatedness estimates for wild populations. The ability to assign kinship from genetic data varies depending on a species' or population's mating system and pattern of dispersal, and empirical data from longitudinal studies are crucial to validate these methods. We use data from a long-term behavioural study of a polygynandrous, bisexually philopatric marine mammal to measure accuracy and precision of parentage and genetic relatedness estimation against a known partial pedigree. We show that with moderate but obtainable sample sizes of approximately 4,235 SNPs and 272 individuals, highly accurate parentage assignments and genetic relatedness coefficients can be obtained. Additionally, we subsample our data to quantify how data availability affects relatedness estimation and kinship assignment. Lastly, we conduct a social network analysis to investigate the extent to which accuracy and precision of relatedness estimation improve statistical power to detect an effect of relatedness on social structure. Our results provide practical guidance for minimum sample sizes and sequencing depth for future studies, as well as thresholds for post hoc interpretation of previous analyses.

A framework for the identification of long-term social avoidance in longitudinal datasets.

Animal sociality is of significant interest to evolutionary and behavioural ecologists, with efforts focused on the patterns, causes and fitness outcomes of social preference. However, individual social patterns are the consequence of both attraction to (preference for) and avoidance of conspecifics. Despite this, social avoidance has received far less attention than social preference. Here, we detail the necessary steps to generate a spatially explicit, iterative null model which can be used to identify non-random social avoidance in longitudinal studies of social animals. We specifically identify and detail parameters which will influence the validity of the model. To test the usability of this model, we applied it to two longitudinal studies of social animals (Eastern water dragons (Intellegama lesueurii) and bottlenose dolphins (Tursiops aduncus)) to identify the presence of social avoidances. Using this model allowed us to identify the presence of social avoidances in both species. We hope that the framework presented here inspires interest in addressing this critical gap in our understanding of animal sociality, in turn allowing for a more holistic understanding of social interactions, relationships and structure.

Is blood thicker than water? The role of kin and non-kin in non-mother-calf associations of captive bottlenose dolphins (Tursiops truncatus).

Relationships are important for social animals and kinship can play a vital role. Still, occurrence and function of kin bonds (aside from mother) in delphinid calf associations, alloparenting, or calf rearing are poorly represented in the literature. This study examined the role of kin and non-kin in non-mother-calf associations for a managed population of bottlenose dolphins. Calf associations were event sampled to determine if kin and non-kin differences existed in frequency or duration. Calves with kin present exhibited a higher average number of associates than calves without kin. Yet calves showed no conclusive association preference in frequency; though some individuals showed early signs of developing kin preferences. Duration and context of associations did not differ between kin and non-kin, suggesting they serve the same developmental purpose. However, personality, calf age, and associate age played a greater role in the formation of calf associations, supporting the notion that calves choose associates with similar traits, aiding in their development in difficult and changing environments. Though kinship is important in the formation of relationships in older dolphins, it appears that outside the mother-calf bond, there are other more influential factors, such as age, personality, and sociality in the formation of early developmental bonds.