Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 52
Filtrar
Mais filtros










Base de dados
Intervalo de ano de publicação
1.
Brief Bioinform ; 25(4)2024 May 23.
Artigo em Inglês | MEDLINE | ID: mdl-38836702

RESUMO

Non-invasive prenatal testing (NIPT) is a quite popular approach for detecting fetal genomic aneuploidies. However, due to the limitations on sequencing read length and coverage, NIPT suffers a bottleneck on further improving performance and conducting earlier detection. The errors mainly come from reference biases and population polymorphism. To break this bottleneck, we proposed NIPT-PG, which enables the NIPT algorithm to learn from population data. A pan-genome model is introduced to incorporate variant and polymorphic loci information from tested population. Subsequently, we proposed a sequence-to-graph alignment method, which considers the read mis-match rates during the mapping process, and an indexing method using hash indexing and adjacency lists to accelerate the read alignment process. Finally, by integrating multi-source aligned read and polymorphic sites across the pan-genome, NIPT-PG obtains a more accurate z-score, thereby improving the accuracy of chromosomal aneuploidy detection. We tested NIPT-PG on two simulated datasets and 745 real-world cell-free DNA sequencing data sets from pregnant women. Results demonstrate that NIPT-PG outperforms the standard z-score test. Furthermore, combining experimental and theoretical analyses, we demonstrate the probably approximately correct learnability of NIPT-PG. In summary, NIPT-PG provides a new perspective for fetal chromosomal aneuploidies detection. NIPT-PG may have broad applications in clinical testing, and its detection results can serve as a reference for false positive samples approaching the critical threshold.


Assuntos
Aneuploidia , Teste Pré-Natal não Invasivo , Humanos , Feminino , Gravidez , Teste Pré-Natal não Invasivo/métodos , Algoritmos , Genômica/métodos , Diagnóstico Pré-Natal/métodos , Análise de Sequência de DNA/métodos
2.
Adv Mater ; : e2403154, 2024 Apr 17.
Artigo em Holandês | MEDLINE | ID: mdl-38631700

RESUMO

Van der Waals (vdW) ferromagnetic materials have emerged as a promising platform for the development of 2D spintronic devices. However, studies to date are restricted to vdW ferromagnetic materials with low Curie temperature (Tc) and small magnetic anisotropy. Here, a chemical vapor transport method is developed to synthesize a high-quality room-temperature ferromagnet, Fe3GaTe2 (c-Fe3GaTe2), which boasts a high Tc = 356 K and large perpendicular magnetic anisotropy. Due to the planar symmetry breaking, an unconventional room-temperature antisymmetric magnetoresistance (MR) is first observed in c-Fe3GaTe2 devices with step features, manifesting as three distinctive states of high, intermediate, and low resistance with the sweeping magnetic field. Moreover, the modulation of the antisymmetric MR is demonstrated by controlling the height of the surface steps. This work provides new routes to achieve magnetic random storage and logic devices by utilizing the room-temperature thickness-controlled antisymmetric MR and further design room-temperature 2D spintronic devices based on the vdW ferromagnet c-Fe3GaTe2.

3.
Patterns (N Y) ; 5(3): 100915, 2024 Mar 08.
Artigo em Inglês | MEDLINE | ID: mdl-38487801

RESUMO

Understanding tissue architecture and niche-specific microenvironments in spatially resolved transcriptomics (SRT) requires in situ annotation and labeling of cells. Effective spatial visualization of these data demands appropriate colorization of numerous cell types. However, current colorization frameworks often inadequately account for the spatial relationships between cell types. This results in perceptual ambiguity in neighboring cells of biological distinct types, particularly in complex environments such as brain or tumor. To address this, we introduce Spaco, a potent tool for spatially aware colorization. Spaco utilizes the Degree of Interlacement metric to construct a weighted graph that evaluates the spatial relationships among different cell types, refining color assignments. Furthermore, Spaco incorporates an adaptive palette selection approach to amplify chromatic distinctions. When benchmarked on four diverse datasets, Spaco outperforms existing solutions, capturing complex spatial relationships and boosting visual clarity. Spaco ensures broad accessibility by accommodating color vision deficiency and offering open-accessible code in both Python and R.

4.
Nat Commun ; 15(1): 1951, 2024 Mar 02.
Artigo em Inglês | MEDLINE | ID: mdl-38431716

RESUMO

Epoxides, as a prominent small ring O-heterocyclic and the privileged pharmacophores for medicinal chemistry, have recently represented an ideal substrate for the development of single-atom replacements. The previous O-to-C replacement strategy for epoxides to date typically requires high temperatures to achieve low yields and lacks substrate range and functional group tolerance, so achieving this oxygen-carbon exchange remains a formidable challenge. Here, we report a silver-catalyzed direct conversion of epoxides into trifluoromethylcyclopropanes in a single step using trifluoromethyl N-triftosylhydrazones as carbene precursors, thereby achieving oxygen-carbon exchange via a tandem deoxygenation/[2 + 1] cycloaddition. The reaction shows broad tolerance of functional groups, allowing routine cheletropic olefin synthesis in a strategy for the net oxygen-carbon exchange reaction. The utility of this method is further showcased with the late-stage diversification of epoxides derived from bioactive natural products and drugs. Mechanistic experiments and DFT calculations elucidate the reaction mechanism and the origin of the chemo- and stereoselectivity.

5.
Chemistry ; 30(16): e202304227, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38199953

RESUMO

Given the prevalence of heterocyclic scaffolds in drug-related molecules, converting these highly modular heterocyclic scaffolds into structural diversified and dearomatized analogs is an ideal strategy for improving their physicochemical and pharmacokinetic properties. Here, we described an efficient method for silver carbene-mediated dearomative N-N bond cleavage leading to skeletal hopping between indazole and 1,2-dihydroquinazoline via a highly selective single-carbon insertion procedure. Using this methodology, a series of dihydroquinazoline analogues with diarylmethylene-substituted quaternary carbon centers were constructed with excellent yields and good functional group compatibility, which was further illustrated by the late-stage diversification of important pharmaceutically active ingredients. DFT calculations indicated that the silver catalyst not only induces the formation of the silver carbene, but also activates the diazahexatriene intermediate, which plays a crucial role in the formation of the C-N bond.

6.
Angew Chem Int Ed Engl ; 63(1): e202313807, 2024 Jan 02.
Artigo em Inglês | MEDLINE | ID: mdl-37966100

RESUMO

The skeletal ring expansion of heteroarenes through carbene insertion is gaining popularity in synthetic chemistry. Efficient strategies for heterocyclic ring expansion to access heterocycles containing a fluoroalkyl quaternary carbon center through fluoroalkyl carbene insertion are highly desirable because of their broad applications in medicinal chemistry. Herein, we report a general strategy for the dearomative one-carbon insertion of azoles using fluoroalkyl N-triftosylhydrazones as fluoroalkyl carbene precursors, resulting in ring-expanded heterocycles in excellent yields with good functional-group compatibility. The broad generality of this methodology in the late-stage diversification of pharmaceutically interesting bioactive molecules and versatile transformations of the products has been demonstrated.

7.
Environ Int ; 183: 108387, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-38141490

RESUMO

Air pollution over the oceans has received less attention compared to densely populated urban areas of continents. The Bohai Sea, a semi-enclosed sea in northern China, is surrounded by thirteen industrial cities that have experienced significant improvements in air quality over the past decade. However, the changes in air pollution over the Bohai Sea and its impacts on surrounding cities remain poorly understood. To address this, this study investigated the evolution of air pollution and its chemical composition in the Bohai Sea over four decades, utilizing satellite remote sensing data, reanalysis datasets, emissions inventories, and statistical modeling. Historically, the region has suffered from severe air pollution, resulting from a combination of continental emissions and marine inputs (e.g., sea salt, ports and maritime vessel activities). The aerosol optical depth (AOD) over the sea was higher than the mean levels observed in its surrounding coastal cities. Statistically, 45% of the air masses reaching the Bohai Sea are associated with natural sources (dust- and marine-rich), while the remainder carry anthropogenic pollutants from continental regions. With the exception of Cangzhou city, these coastal cities suffer from air pollutants originating from the Bohai Sea. Cities in the northern region of the sea, spanning from Tianjin to Yingkou, are particularly impacted. The majority of the surrounding cities are affected by a large proportion of anthropogenic aerosol types transported through air masses from the Bohai Sea, including those from biomass burning and industrial activities. These findings emphasize the considerable influence of human-induced sources in the Bohai Sea on neighboring urban areas. Furthermore, being a maritime region, natural sources like sea salt and dust from the sea may also exert a discernible impact on the neighboring environment.


Assuntos
Poluentes Atmosféricos , Poluição do Ar , Humanos , Cidades , Poluentes Atmosféricos/análise , Poeira/análise , Poluição do Ar/análise , China , Aerossóis/análise , Monitoramento Ambiental/métodos
8.
Nucleic Acids Res ; 51(21): 11770-11782, 2023 Nov 27.
Artigo em Inglês | MEDLINE | ID: mdl-37870428

RESUMO

Precision medicine depends on high-accuracy individual-level genotype data. However, the whole-genome sequencing (WGS) is still not suitable for gigantic studies due to budget constraints. It is particularly important to construct highly accurate haplotype reference panel for genotype imputation. In this study, we used 10 000 samples with medium-depth WGS to construct a reference panel that we named the CKB reference panel. By imputing microarray datasets, it showed that the CKB panel outperformed compared panels in terms of both the number of well-imputed variants and imputation accuracy. In addition, we have completed the imputation of 100 706 microarrays with the CKB panel, and the after-imputed data is the hitherto largest whole genome data of the Chinese population. Furthermore, in the GWAS analysis of real phenotype height, the number of tested SNPs tripled and the number of significant SNPs doubled after imputation. Finally, we developed an online server for offering free genotype imputation service based on the CKB reference panel (https://db.cngb.org/imputation/). We believe that the CKB panel is of great value for imputing microarray or low-coverage genotype data of Chinese population, and potentially mixed populations. The imputation-completed 100 706 microarray data are enormous and precious resources of population genetic studies for complex traits and diseases.


Assuntos
Bancos de Espécimes Biológicos , Genoma , Humanos , Haplótipos , Genótipo , Estudo de Associação Genômica Ampla , Polimorfismo de Nucleotídeo Único , China
9.
Acta Biomater ; 168: 323-332, 2023 09 15.
Artigo em Inglês | MEDLINE | ID: mdl-37414111

RESUMO

Spider silk is biocompatible, biodegradable, and rivals some of the best synthetic materials in terms of strength and toughness. Despite extensive research, comprehensive experimental evidence of the formation and morphology of its internal structure is still limited and controversially discussed. Here, we report the complete mechanical decomposition of natural silk fibers from the golden silk orb-weaver Trichonephila clavipes into ≈10 nm-diameter nanofibrils, the material's apparent fundamental building blocks. Furthermore, we produced nanofibrils of virtually identical morphology by triggering an intrinsic self-assembly mechanism of the silk proteins. Independent physico-chemical fibrillation triggers were revealed, enabling fiber assembly from stored precursors "at-will". This knowledge furthers the understanding of this exceptional material's fundamentals, and ultimately, leads toward the realization of silk-based high-performance materials. STATEMENT OF SIGNIFICANCE: Spider silk is one of the strongest and toughest biomaterials, rivaling the best man-made materials. The origins of these traits are still under debate but are mostly attributed to the material's intriguing hierarchical structure. Here we fully disassembled spider silk into 10 nm-diameter nanofibrils for the first time and showed that nanofibrils of the same appearance can be produced via molecular self-assembly of spider silk proteins under certain conditions. This shows that nanofibrils are the key structural elements in silk and leads toward the production of high-performance future materials inspired by spider silk.


Assuntos
Seda , Aranhas , Animais , Seda/química , Materiais Biocompatíveis/metabolismo , Aranhas/metabolismo
10.
J Photochem Photobiol B ; 242: 112692, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-36958087

RESUMO

Ligusticum chuanxiong Hort. (Chuanxiong) is an important Chinese medicinal herb, whose rhizomes are widely used as raw materials for treating various diseases caused by blood stasis. The fresh tender stems and leaves of Chuanxiong are also consumed and have the potential as microgreens. Here, we investigated the effect of light spectra on yield and total flavonoid content of Chuanxiong microgreens by treatment with LED-based white light (WL), red light (RL), blue light (BL), and continuous darkness (DD). The results showed that WL and BL reduced biomass accumulation but significantly increased total flavonoid content compared to RL or DD treatments. Widely targeted metabolomics analysis confirmed that BL promoted the accumulation of flavones and flavonols in Chuanxiong microgreens. Further integration of transcriptomics and metabolomics analysis revealed the mechanism by which BL induces the up-regulation of transcription factors such as HY5 and MYBs, promotes the expression of key genes targeted for flavonoid biosynthesis, and ultimately leads to the accumulation of flavones and flavonols. This study suggests that blue light is a proper light spectra to improve the quality of Chuanxiong microgreens, and the research results lay a foundation for guiding the de-etiolation of Chuanxiong microgreens to obtain both yield and quality in production practice.


Assuntos
Flavonas , Ligusticum , Flavonóis , Transcriptoma , Flavonoides , Metabolômica
11.
Anal Methods ; 15(10): 1315-1322, 2023 Mar 09.
Artigo em Inglês | MEDLINE | ID: mdl-36802289

RESUMO

In this work, a new type of H2S sensor was fabricated by means of drop-coating of an Au/SnO-SnO2 nanosheet material, which was prepared by a one-pot hydrothermal reaction, onto a gold electrode in an alumina ceramic tube with the formation of a thin nanocomposite film. The microstructure and morphology of the nanosheet composites were characterized by scanning electron microscopy (SEM) and transmission electron microscopy (TEM). A gas-sensitivity study presented good H2S-sensing performance of such Au/SnO-SnO2 nanosheet composites. At an optimal operating temperature of 240 °C and ambient temperature of 25 °C, the resulting sensor showed a good linear response to H2S in a range of 1.0 to 100 ppm with a low detection limit of 0.7 ppm, and a very fast response-recovery time of 22 s for response and 63 s for recovery, respectively. The sensor was also unaffected by ambient humidity and had good reproducibility and selectivity. When being applied to the monitoring of H2S in an atmospheric environment in a pig farm, the response signal to H2S was only attenuated by 4.69% within 90 days, proving that the sensor had a long and stable service lifetime for continuous running and showing its important practical application prospects.

12.
J Hazard Mater ; 441: 129910, 2023 01 05.
Artigo em Inglês | MEDLINE | ID: mdl-36088877

RESUMO

The role of chloride in atmospheric chemistry received increased attention over recent years. Given the primary and chemical-active nature of PM2.5-bound chlorine (p-Cl-), it makes sense to get to know the sources and processes of p-Cl-. The temporal behavior of observed p-Cl- concentration based on 1-h high resolution exhibited seasonal variation of high in winter, low in summer and diurnal variation of high in the morning, low in afternoon. Meteorological normalization technique based on random forest was used to disentangle the effects of emission changes which affected the seasonal variation and meteorology which was related to diurnal variation on p-Cl-. Generalized additive model (GAM) identified RH and temperature as the key meteorological factors of p-Cl- generation, and p-Cl- pollution was serious under the condition of low temperature and high RH. Dispersion-normalized positive matrix factorization (DN-PMF) was used to apportion the p-Cl- to its sources, finding that coal combustion was the main source of p-Cl-, followed by biomass burning and industrial process emissions. Our results will provide the basis for further analysis the causes of p-Cl- pollution and composite air pollution control strategies.


Assuntos
Poluentes Atmosféricos , Poluição do Ar , Poluentes Atmosféricos/análise , Poluição do Ar/análise , China , Cloretos , Cloro/análise , Carvão Mineral/análise , Monitoramento Ambiental , Meteorologia , Material Particulado/análise , Estações do Ano , Emissões de Veículos/análise
13.
J Adv Res ; 43: 13-26, 2023 01.
Artigo em Inglês | MEDLINE | ID: mdl-36585103

RESUMO

INTRODUCTION: During the arms race between plants and pathogens, pathogenesis-related proteins (PR) in host plants play a crucial role in disease resistance, especially PR1. PR1 constitute a secretory peptide family, and their role in plant defense has been widely demonstrated in both hosts and in vitro. However, the mechanisms by which they control host-pathogen interactions and the nature of their targets within the pathogen remain poorly understood. OBJECTIVES: The present study was aimed to investigate the anti-oomycete activity of secretory PR1 proteins and elaborate their underlying mechanisms. METHODS: This study was conducted in the potato-Phytophthora infestans pathosystem. After being induced by the pathogen infection, the cross-kingdom translocation of secretory PR1 was demonstrated by histochemical assays and western blot, and their targets in P. infestans were identified by yeast-two-hybrid assays, bimolecular fluorescence complementation assays, and co-immunoprecipitation assay. RESULTS: The results showed that the expression of secretory PR1-encoding genes was induced during pathogen infection, and the host could deliver PR1 into P. infestans to inhibit its vegetative growth and pathogenicity. The translocated secretory PR1 targeted the subunits of the AMPK kinase complex in P. infestans, thus affecting the AMPK-driven phosphorylation of downstream target proteins, preventing ROS homeostasis, and down-regulating the expression of RxLR effectors. CONCLUSION: The results provide novel insights into the molecular function of PR1 in protecting plants against pathogen infection, and uncover a potential target for preventing pre- and post-harvest late blight.


Assuntos
Quinases Proteína-Quinases Ativadas por AMP , Phytophthora infestans , Plantas , Phytophthora infestans/genética , Interações Hospedeiro-Patógeno , Resistência à Doença/genética
14.
Nat Commun ; 13(1): 7649, 2022 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-36496464

RESUMO

The conversion of inexpensive aqueous ammonia (NH3·H2O) into value-added primary amines by N-H insertion persists as a longstanding challenge in chemistry because of the tendency of Lewis basic ammonia (NH3) to bind and inhibit metal catalysts. Herein, we report a chemoselective carbene N-H insertion of NH3·H2O using a TpBr3Ag-catalyzed two-phase system. Coordination by a homoscorpionate TpBr3 ligand renders silver compatible with NH3 and H2O and enables the generation of electrophilic silver carbene. Water promotes subsequent [1,2]-proton shift to generate N-H insertion products with high chemoselectivity. The result of the reaction is the coupling of an inorganic nitrogen source with either diazo compounds or N-triftosylhydrazones to produce useful primary amines. Further investigations elucidate the reaction mechanism and the origin of chemoselectivity.


Assuntos
Amônia , Prótons , Amônia/química , Prata , Metano/química , Aminas/química , Água/química
15.
Chem Commun (Camb) ; 58(99): 13699-13715, 2022 Dec 13.
Artigo em Inglês | MEDLINE | ID: mdl-36453127

RESUMO

Catalytic carbene transfer reactions are fundamental transformations in modern organic synthesis, which enable direct access to diverse structurally complex molecules. Despite diazo precursors playing a crucial role in catalytic carbene transfer reactions, most reported methodologies take into account only diazoacetates or related compounds. This is primarily because diazoalkanes, unless they contain a resonance stabilizing group, are more susceptible to violent exothermic decomposition. In this feature article, we present an alternative approach to carbene-transfer reactions based on the formation of highly electrophilic silver carbenes from N-sulfonylhydrazones, where the high electrophilicity of silver carbenes stems from the weak interaction between silver and the carbenic carbon. These precursors are readily accessible, stable, and environmentally sustainable. Using the strategy that employs highly electrophilic silver carbenes, it is possible to develop novel intermolecular transformations involving non-stabilized carbenes, including C(sp3)-H insertion, C(sp3)-C(O) insertion, cycloaddition, and defluorinative functionalization. The silver-catalyzed carbene transfer reactions described here have high efficiency, unusual reactivity, exceptional selectivity, and a reaction pathway that differs from typical transition metal-catalyzed reactions. Our research provided fundamental insight into silver carbene chemistry, and we hope to apply this mode of catalysis to other more general transformations, including asymmetric transformations.

16.
Int J Mol Sci ; 23(19)2022 Sep 25.
Artigo em Inglês | MEDLINE | ID: mdl-36232611

RESUMO

Auxenochlorella pyrenoidosa is an efficient photosynthetic microalga with autotrophic growth and reproduction, which has the advantages of rich nutrition and high protein content. Target of rapamycin (TOR) is a conserved protein kinase in eukaryotes both structurally and functionally, but little is known about the TOR signalling in Auxenochlorella pyrenoidosa. Here, we found a conserved ApTOR protein in Auxenochlorella pyrenoidosa, and the key components of TOR complex 1 (TORC1) were present, while the components RICTOR and SIN1 of the TORC2 were absent in Auxenochlorella pyrenoidosa. Drug sensitivity experiments showed that AZD8055 could effectively inhibit the growth of Auxenochlorella pyrenoidosa, whereas rapamycin, Torin1 and KU0063794 had no obvious effect on the growth of Auxenochlorella pyrenoidosaa. Transcriptome data results indicated that Auxenochlorella pyrenoidosa TOR (ApTOR) regulates various intracellular metabolism and signaling pathways in Auxenochlorella pyrenoidosa. Most genes related to chloroplast development and photosynthesis were significantly down-regulated under ApTOR inhibition by AZD8055. In addition, ApTOR was involved in regulating protein synthesis and catabolism by multiple metabolic pathways in Auxenochlorella pyrenoidosa. Importantly, the inhibition of ApTOR by AZD8055 disrupted the normal carbon and nitrogen metabolism, protein and fatty acid metabolism, and TCA cycle of Auxenochlorella pyrenoidosa cells, thus inhibiting the growth of Auxenochlorella pyrenoidosa. These RNA-seq results indicated that ApTOR plays important roles in photosynthesis, intracellular metabolism and cell growth, and provided some insights into the function of ApTOR in Auxenochlorella pyrenoidosa.


Assuntos
Fotossíntese , Sirolimo , Carbono , Ácidos Graxos , Alvo Mecanístico do Complexo 1 de Rapamicina/metabolismo , Alvo Mecanístico do Complexo 2 de Rapamicina/metabolismo , Nitrogênio , Proteínas Quinases/metabolismo , Sirolimo/farmacologia
17.
Nat Commun ; 13(1): 4280, 2022 07 25.
Artigo em Inglês | MEDLINE | ID: mdl-35879307

RESUMO

The C-F bond cleavage and C-C bond formation (i.e., carbodefluorination) of readily accessible (per)fluoroalkyl groups constitutes an atom-economical and efficient route to partially fluorinated compounds. However, the selective mono-carbodefluorination of trifluoromethyl (CF3) groups remains a challenge, due to the notorious inertness of C-F bond and the risk of over-defluorination arising from C-F bond strength decrease as the defluorination proceeds. Herein, we report a carbene-initiated rearrangement strategy for the carbodefluorination of fluoroalkyl ketones with ß,γ-unsaturated alcohols to provide skeletally and functionally diverse α-mono- and α,α-difluoro-γ,δ-unsaturated ketones. The reaction starts with the formation of silver carbenes from fluoroalkyl N-triftosylhydrazones, followed by nucleophilic attack of a ß,γ-unsaturated alcohol to form key silver-coordinated oxonium ylide intermediates, which triggers selective C-F bond cleavage by HF elimination and C-C bond formation through Claisen rearrangement of in situ generated difluorovinyl ether. The origin of chemoselectivity and the reaction mechanism are determined by experimental and DFT calculations. Collectively, this strategy by an intramolecular cascade process offers significant advances over existing stepwise strategies in terms of selectivity, efficiency, functional group tolerance, etc.


Assuntos
Cetonas , Prata , Álcoois , Cetonas/química , Metano/análogos & derivados , Metano/química
18.
Int J Mol Sci ; 23(13)2022 Jul 04.
Artigo em Inglês | MEDLINE | ID: mdl-35806454

RESUMO

Target of rapamycin (TOR) is a serine/threonine protein kinase that plays a central regulating role in cell proliferation, growth, and metabolism, but little is known about the TOR signaling pathway in Chlorella sorokiniana. In this study, a Chlorella sorokiniana DP-1 strain was isolated and identified, and its nutritional compositions were analyzed. Based on homologous sequence analysis, the conserved CsTOR protein was found in the genome of Chlorella sorokiniana. In addition, the key components of TOR complex 1 (TORC1) were present, but the components of TORC2 (RICTOR and SIN1) were absent in Chlorella sorokiniana. Pharmacological assays showed that Chlorella sorokiniana DP-1 was insensitive to rapamycin, Torin1 and KU0063794, whereas AZD8055 could significantly inhibit the growth of Chlorella sorokiniana. RNA-seq analysis showed that CsTOR regulated various metabolic processes and signal transduction pathways in AZD8055-treated Chlorella sorokiniana DP-1. Most genes involved in photosynthesis and carbon fixation in Chlorella sorokiniana DP-1 were significantly downregulated under CsTOR inhibition, indicating that CsTOR positively regulated the photosynthesis in Chlorella sorokiniana. Furthermore, CsTOR controlled protein synthesis and degradation by positively regulating ribosome synthesis and negatively regulating autophagy. These observations suggested that CsTOR plays an important role in photosynthesis and cellular metabolism, and provide new insights into the function of CsTOR in Chlorella sorokiniana.


Assuntos
Chlorella , Chlorella/genética , Alvo Mecanístico do Complexo 1 de Rapamicina/metabolismo , Fotossíntese , Transdução de Sinais , Sirolimo/farmacologia
19.
J Adv Res ; 39: 1-13, 2022 07.
Artigo em Inglês | MEDLINE | ID: mdl-35777900

RESUMO

INTRODUCTION: Biofungicides with low toxicity and high efficiency are a global priority for sustainable agricultural development. Phytohormone salicylic acid (SA) is an ancient medicine against various diseases in humans and activates the immune system in plants, but little is known of its function as a biofungicide. OBJECTIVES: Here, Fusarium oxysporum, the causal agent of devastating Fusarium wilt and immunodepressed patients, was used as a model system to explore whether SA can enter the pathogen cells and suppress key targets of the pathogen. METHODS: Oxford Nanopore MinION sequencing and high-throughput chromosome conformation capture (Hi-C) sequencing were used to analyzed the genome of F. oxysporum. In addition, RNA-seq, qRT-PCR, and western blotting were conducted to detect gene and protein expression levels. RESULTS: We isolated and sequenced the genome of F. oxysporum from potato dry rot, and the F. oxysporum included 12 chromosomes and 52.3 Mb genomic length. Pharmacological assays showed that exogenous application of SA can efficiently arrest hyphal growth, spore production, and pathogenicity of F. oxysporum, whereas endogenous salicylate hydroxylases significantly detoxify SA. The synergistic growth inhibition of F. oxysporum was observed when SA was combined with rapamycin. Kinase assays showed that SA inhibits FoTOR complex 1 (FoTORC1) by activating FoSNF1 in vivo. Transgenic potato plants with the interference of FoTOR1 and FoSAH1 genes inhibited the invasive growth of hyphae and significantly prevented the occurrence of Fusarium wilt. CONCLUSION: This study revealed the underlying mechanisms of SA against F. oxysporum and provided insights into SA in controlling various fungal diseases by targeting the SNF1-TORC1 pathway of pathogens.


Assuntos
Fusarium , Solanum tuberosum , Fusarium/genética , Humanos , Doenças das Plantas/microbiologia , Plantas Geneticamente Modificadas , Ácido Salicílico , Transdução de Sinais , Sirolimo , Solanum tuberosum/genética
20.
Sci Total Environ ; 825: 153980, 2022 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-35217037

RESUMO

Sand and dust storms (SDS) frequently hit northern China and adversely impact both environment and health. The carbonaceous components, inorganic elements, water-soluble ions, and meteorological parameters of several severe SDS episodes have been measured in a supersite in Tianjin, which is a big and representative city located in SDS transmission pathway in northern China. Six SDS episodes were identified in Spring, 2021. The maximum PM10 mass concentration was 2684 and 1664 µg/m3 in SDS1 and SDS3, respectively. North and northwest wind was dominant and significant differences were found in wind speed and RH between the SDS and non-SDS episodes. North dust from Inner Mongolia and Mongolia was determined by back trajectory analysis as the probable source region. The mass concentration of SO42-, NO3-, and NH4+ decreased in PM2.5. Increase of Na+ and K+ and low SO42-SDS/ SO42-non-SDS indicate dust source for short length SDS transmission in northern China. The ratio of elements could also be used to distinguish SDS and non-SDS episodes identify north and northwest source for the SDS episodes. Pb/Al, Zn/Al, and Si/Al could be regarded as indicators for SDS and non-SDS episodes, Ca/Al and Ca/Si can help to indicate SDS source direction. This study provides a variety of evidences for the dust source identification and reveals the characteristics of the most severe SDS episodes of the decade in Tianjin during Spring 2021.


Assuntos
Poluentes Atmosféricos , Material Particulado , Aerossóis/análise , Poluentes Atmosféricos/análise , China , Poeira/análise , Monitoramento Ambiental , Íons/análise , Material Particulado/análise , Areia , Estações do Ano
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA
...