RESUMO
Two strains, DMKU-LV83 and DMKU-LV85, of a novel yeast species were isolated from the phylloplane of vetiver grass collected in Thailand by plating of leaf washings. Analysis of the sequences of the D1/D2 region of the large subunit (LSU) rRNA gene showed that the two strains represent a single novel species and most closely related to Meira miltonrushii. However, the novel species differed from the type strain of M. miltonrushii (MCA 3882T) by 5.5â% nucleotide substitutions in the D1/D2 region and 8.9â% nucleotide substitutions in the ITS region. The phylogenetic analysis based on the D1/D2 region of the LSU rRNA gene confirmed the placement of the novel species in the Meira clade and its close affinity with M. miltonrushii. Therefore, the species Meira siamensis sp. nov. is proposed. The type strain is DMKU-LV83T (=CBS 12860T=BCC 61180T).
Assuntos
Vetiveria/microbiologia , Filogenia , Folhas de Planta/microbiologia , Basidiomycota/classificação , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , Genes de RNAr , Técnicas de Tipagem Micológica , Análise de Sequência de DNA , TailândiaRESUMO
Strain DMKU-PS11(1)T was isolated from peat in a swamp forest in Thailand. DNA sequence analysis showed that it belonged to a novel species that was most closely related to Nakazawaea laoshanensis. However, it differed from the type strain of N. laoshanensis (NRRL Y-63634T) by 2.3â% nucleotide substitutions in the D1/D2 region of the large subunit (LSU) rRNA gene, 1.0â% nucleotide substitutions in the small subunit (SSU) rRNA gene and 8.0â% nucleotide substitutions in the internal transcribed spacer (ITS) region. The phylogenetic analyses based on the combined sequences of the SSU and the D1/D2 region and that of the SSU sequences alone confirmed the placement of the novel species in the Nakazawaea clade and its close affinity with N. laoshanensis. Hence, the species Nakazawaea todaengensis f.a., sp. nov. is proposed. The type strain is DMKU-PS11(1)T (=CBS 14555T=TBRC 6559T). The MycoBank number for Nakazawaea todaengensis f.a., sp. nov. is MB 819513.
Assuntos
Filogenia , Saccharomycetales/classificação , Áreas Alagadas , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , Técnicas de Tipagem Micológica , Saccharomycetales/genética , Saccharomycetales/isolamento & purificação , Análise de Sequência de DNA , Solo , TailândiaRESUMO
Three strains representing one novel yeast species were isolated from the phylloplanes of the vetiver grasses (DMKU-LV90 and DMKU-LV99(T)) and sugarcane (DMKU-SP260) collected in Thailand by leaf washing followed by a plating technique. On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics and the sequence analysis of the D1/D2 region of the large subunit (LSU) rRNA gene and the internal transcribed spacer region (ITS), the three strains were found to represent a single novel anamorphic ustilaginomycetous yeast species in the genus Pseudozyma. The name Pseudozyma vetiver sp. nov. is proposed for this novel species. The type strain is DMKU-LV99(T) (BCC 61021 = CBS 12824). The novel species showed phylogenetic relationships to the other members of the genus Pseudozyma and to teleomorphic fungal genera, namely Ustilago, Sporisorium and Anomalomyces in Ustilaginaceae, Ustilaginales. The three strains showed identical sequences both in the D1/D2 and ITS regions. The Pseudozyma species closest to the novel species in terms of pairwise sequence similarity in the D1/D2 region was Pseudozyma pruni but with 2.3 % nucleotide substitutions (14 nucleotide substitutions and no gaps out of 606 nt). The novel species and P. pruni differed by 10.9 % nucleotide substitutions (75 nucleotide substitutions and 31 gaps out of 691 nt) in the ITS region. The phylogenetic analysis based on the combined sequences of the ITS region and the D1/D2 region of the LSU rRNA gene showed that the novel species was found to be most closely related to Pseudozyma fusiformata but with 2.9 % nucleotide substitutions in the D1/D2 region and 7.4 % nucleotide substitutions in the ITS region.
Assuntos
Ustilaginales/classificação , Ustilaginales/isolamento & purificação , Carbono/metabolismo , Análise por Conglomerados , DNA Fúngico/química , DNA Fúngico/genética , DNA Ribossômico/química , DNA Ribossômico/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Genes de RNAr , Microscopia , Dados de Sequência Molecular , Técnicas de Tipagem Micológica , Nitrogênio/metabolismo , Filogenia , Folhas de Planta/microbiologia , RNA Fúngico/genética , RNA Ribossômico/genética , Análise de Sequência de DNA , Tailândia , Ustilaginales/genéticaRESUMO
Bangkok (Thailand) covers more than 1500 km2 and has 10 million inhabitants. The disposal of wastewater is creating huge problems of pollution. The estimated amount of sewage sludge was estimated to be around 108 tonnes dry matter (DM) per day in 2005. In order to find a lasting way of disposal for this sewage sludge, the suitability of the sludge produced from three waste-water treatment plants for use as fertilizing material was investigated. Monthly samplings and analysis of sewage sludge from each plant showed that the composition of sludge varied according to the area of collection and period of sampling, and there was no link to rainfall cycle. Plant nutrient content was high (i.e. total N from 19 to 38 g kg(-1) DM) whereas organic matter content was low. The concentrations of heavy metals varied between sludge samples, and were sometimes higher than the E.U. or U.S. regulations for sewage sludge use in agriculture. Faecal coliforms were present in the sludge from one of the plants, indicating a possible contamination by night soil. In order to decrease this potentially pathogenic population the sewage sludge should be heated by composting. As the C/N ratio of sewage sludge was low (around 6) some organic by-products with high carbon content could be added as structural material to enhance the composting.
