Synthesis of "Porphyrin-linker-Thiol" molecules with diverse linkers for studies of molecular-based information storage

The attachment of redox-active molecules such as porphyrins to an electroactive surface provides an attractive approach for electrically addressable molecular-based information storage. Porphyrins are readily attached to a gold surface via thiol linkers. The rate of electron transfer between the electroactive surface and the porphyrin is one of the key factors that dictates suitability for molecular-based memory storage. This rate depends on the type and length of the linker connecting the thiol unit to the porphyrin. We have developed different routes for the preparation of thiol-derivatized porphyrins with eight different linkers. Two sets of linkers explore the effects of linker length and conjugation, with one set comprising phenylethyne units and one set comprising alkyl units. One electron-deficient linker has four fluorine atoms attached directly to a thiophenyl unit. To facilitate the synthesis of the porphyrins, convenient routes have been developed to a wide range of aldehydes possessing a protected S-acetylthio group. An efficient synthesis of 1-(S-acetylthio)-4-iodobenzene also has been developed. A set of porphyrins, each bearing one S-acetyl-derivatized linker at one meso position and mesityl moieties at the three remaining meso positions, has been synthesized. Altogether seven new aldehydes, eight free base porphyrins and eight zinc porphyrins have been prepared. The zinc porphyrins bearing the different linkers all form self-assembled monolayers (SAMs) on gold via in situ cleavage of the S-acetyl protecting group. The SAM of each porphyrin is electrochemically robust and exhibits two reversible oxidation waves.

Synthesis of thiol-derivatized ferrocene-porphyrins for studies of multibit information storage

One approach toward storage of multiple bits of information at the molecular level requires the construction of molecular architectures comprised of multiple redox-active units. Four new ferrocene-porphyrins have been synthesized to investigate questions concerning (1) the scope of redox-active molecules that can be employed in molecular information-storage schemes and (2) writing/reading rates as well as retention of charge in redox-active units located at different sites in a molecular architecture. Three of the ferrocene-porphyrins have linkers of different lengths between the ferrocene and porphyrin. The fourth ferrocene-porphyrin has two ferrocenes positioned at the lateral sites on the porphyrin. The latter architecture is designed to provide a shorter distance between the electroactive surface and the ferrocene while maintaining an upright orientation of the porphyrin. Each ferrocene-porphyrin affords three cationic oxidation states (ferrocene monocation, porphyrin monocation, porphyrin dication) in addition to the neutral state, thereby affording the capability of storing two bits of information. Each ferrocene-porphyrin bears an S-acetyl or S-(N-ethyl)carbamoyl-protected thiol moiety, thereby avoiding handling of free thiols. Each ferrocene-porphyrin forms a self-assembled monolayer (SAM) on gold via in situ cleavage of the thiol protecting group. The SAM of each array is electrochemically robust and exhibits three well-resolved, reversible oxidation waves.

Synthesis of thiol-derivatized porphyrin dimers and trimers for studies of architectural effects on multibit information storage

We present the rational design and synthesis of multiporphyrin arrays containing thiol-derivatized linkers for the purpose of multibit molecular information storage. Porphyrin dimers and trimers were synthesized by the Pd-mediated coupling of iodo-substituted and ethynyl-substituted porphyrin building blocks in 5-51% yields. Each porphyrin dimer bears one S-acetylthio group. The architecture of the trimers incorporates a trans-substituted porphyrin (central) bearing two S-acetylthio groups and two diphenylethyne-linked porphyrins (wings) in a trans geometry. The central porphyrin and the wing porphyrins bear distinct substituents and central metals, thereby affording different oxidation potentials. The S-acetylthio groups provide a means for attachment of the arrays to an electroactive surface. The dimers are designed for vertical orientation on an electroactive surface while the trimers are designed for horizontal orientation of the central porphyrin. Altogether seven different arrays were synthesized. Each array forms a self-assembled monolayer (SAM) on gold via in situ cleavage of the S-acetyl protecting group. The SAM of each array is electrochemically robust and exhibits multiple, reversible oxidation waves. In general, however, the trimeric arrays appear to form more highly ordered monolayers that exhibit sharper, better-defined redox features.

Investigation of tightly coupled porphyrin arrays comprised of identical monomers for multibit information storage

Our prior designs for molecular-based information storage devices have employed multiple redox-active units organized in weakly coupled, covalently linked arrays. To explore a simpler design, we report here the synthesis of porphyrin arrays where porphyrins with identical oxidation potentials are directly linked to one another instead of joined via a molecular linker. Oxidative coupling with AgPF(6) of zinc(II)-5,15-bis(4-tert-butylphenyl)-10-phenylporphyrin, obtained by a rational synthesis, afforded the expected dimer joined by a meso-meso linkage and an unexpected trimer joined by meso-meso linkages. For attachment to an electroactive surface we synthesized a meso-linked porphyrin dimer with a thiol-linker in one of the meso positions. The S-acetyl protecting group was used to avoid handling free thiol groups. Coupling of zinc(II)-5,10,15-tris(3, 5-di-tert-butylphenyl)porphyrin ("upper half") and zinc(II)-5-[4-(S-acetylthio)phenyl]-10,20-bis(3, 5-di-tert-butylphenyl)porphyrin ("lower half") afforded three different meso-linked dimers with the desired dimer as the main product. Electrochemical examination of the meso-linked dimer in solution shows that the first two oxidation potentials of the array differ by approximately 0.15 V and straddle the value exhibited by the monomeric constituents. The third and fourth oxidation potentials of the array are also split although to a lesser extent ( approximately 0.08 V) than the first and second. For the meso-linked trimer, the first three oxidation waves are also split; however, these waves are severely overlapped. The electrochemical behavior of the dimers and trimer is indicative of strong electronic interactions among the porphyrins. The thiol-derivatized meso-linked dimers form self-assembled monolayers (SAMs) on gold via in situ cleavage of the S-acetylthio protecting group. The porphyrin SAM exhibits four well-resolved oxidation waves. Regardless, the meso-meso linkage is relatively unstable upon formation of the pi-cation radical(s). This characteristic indicates that the structural motif is of limited utility for molecular information storage elements.

Synthesis of thiol-derivatized europium porphyrinic triple-decker sandwich complexes for multibit molecular information storage

The storage of multiple bits of information at the molecular level requires molecules with a large number of distinct oxidation states. Lanthanide triple-decker sandwich molecules employing porphyrins and phthalocyanines afford four cationic states and are very attractive for molecular information storage applications. Five triple-decker building blocks have been prepared of the type (phthalocyanine)Eu(phthalocyanine)Eu(porphyrin), each bearing one iodo, one ethyne, or one iodo and one ethyne group attached to the porphyrin unit. Two triple-decker building blocks with different oxidation potentials were derivatized with an S-acetylthiophenyl unit for attachment to an electroactive surface. To explore the preparation of arrays comprised of triple deckers, which may lead to the storage of a larger number of bits, two types of dyads of triple deckers were prepared. An ethyne-linked dyad of triple deckers bearing one S-acetylthiophenyl unit was prepared via repetitive Sonogashira couplings, and a butadiyne-linked dyad was prepared via a modified Glaser coupling. The triple deckers were characterized by absorption spectroscopy, laser-desorption mass spectrometry, and (1)H NMR spectroscopy. The thiol-derivatized triple deckers form self-assembled monolayers (SAMs) on gold via in situ cleavage of the thiol protecting group. The SAM of each array is electrochemically robust and exhibits three well-resolved, reversible oxidation waves. These electrochemical characteristics indicate that these types of molecules are well suited for storing multiple bits of information.

A tightly coupled linear array of perylene, bis(porphyrin), and phthalocyanine units that functions as a photoinduced energy-transfer cascade

We have prepared a linear array of chromophores consisting of a perylene input unit, a bis(free base porphyrin) transmission unit, and a free base phthalocyanine output unit for studies in artificial photosynthesis and molecular photonics. The synthesis involved four stages: (1) a rational synthesis of trans-AB2C-porphyrin building blocks each bearing one meso-unsubstituted position, (2) oxidative, meso,meso coupling of the zinc porphyrin monomers to afford a bis(zinc porphyrin) bearing one phthalonitrile group and one iodophenyl group, (3) preparation of a bis(porphyrin)-phthalocyanine array via a mixed cyclization involving the bis(free base porphyrin) and 4-tert-butylphthalonitrile, and (4) Pd-mediated coupling of an ethynylperylene to afford a perylene-bis(porphyrin)-phthalocyanine linear array. The perylene-bis(porphyrin)-phthalocyanine array absorbs strongly across the visible spectrum. Excitation at 490 nm, where the perylene absorbs preferentially, results in fluorescence almost exclusively from the phthalocyanine (phi(f) = 0.78). The excited phthalocyanine forms with time constants of 2 ps (90%) and 13 ps (10%). The observed time constants resemble those of corresponding phenylethyne-linked dyads, including a perylene-porphyrin (< or = 0.5 ps) and a porphyrin-phthalocyanine (1.1 ps (70%) and 8 ps (30%)). The perylene-bis(porphyrin)-phthalocyanine architecture exhibits efficient light-harvesting properties and rapid funneling of energy in a cascade from perylene to bis(porphyrin) to phthalocyanine.