Whole genomes and transcriptomes reveal adaptation and domestication of pistachio.

BACKGROUND: Pistachio (Pistacia vera), one of the most important commercial nut crops worldwide, is highly adaptable to abiotic stresses and is tolerant to drought and salt stresses. RESULTS: Here, we provide a draft de novo genome of pistachio as well as large-scale genome resequencing. Comparative genomic analyses reveal stress adaptation of pistachio is likely attributable to the expanded cytochrome P450 and chitinase gene families. Particularly, a comparative transcriptomic analysis shows that the jasmonic acid (JA) biosynthetic pathway plays an important role in salt tolerance in pistachio. Moreover, we resequence 93 cultivars and 14 wild P. vera genomes and 35 closely related wild Pistacia genomes, to provide insights into population structure, genetic diversity, and domestication. We find that frequent genetic admixture occurred among the different wild Pistacia species. Comparative population genomic analyses reveal that pistachio was domesticated about 8000 years ago and suggest that key genes for domestication related to tree and seed size experienced artificial selection. CONCLUSIONS: Our study provides insight into genetic underpinning of local adaptation and domestication of pistachio. The Pistacia genome sequences should facilitate future studies to understand the genetic basis of agronomically and environmentally related traits of desert crops.

[Physiological response and salt-tolerance of Gleditsia microphylla under NaCl stress].

In order to exploit the salt-tolerance ability and mechanism of Gleditsia microphylla, the plant growth, cell membrane permeability, the activities of cell protective enzymes, and the distri- butions of Na+ and K+ in different tissues were investigated under various NaCl stress (0.053%, 0.15%, 0.3%, 0.45% and 0.6%) with potted two-year seedlings. The results were as follows: With the increase of NaCl concentration, the seedling growth decreased while the salt injured index in- creased, and the salt-tolerance thresholds of seedling was 0.42% NaCl. With the NaCl concentration increasing, the membrane permeability, superoxide anion radical generating rate and MDA content increased grandly, while the activities of SOD, POD and CAT demonstrated an increase-decrease curve which reached the peak at 0.3% or 0.45%. Under the high salt stress condition, the supero- xide anion could be consumed timely by increasing the activities of SOD, POD and CAT enzymes, which was useful to avoid cell injure. Under salt stress condition, the Na+ content in different tissues increased gradually, following the order of root > leaf > stem, and the K+ content and K+/Na+ in different tissues decreased, following the order of leaf > root > stem. The K+-Na+ selective transpor- tation coefficients (S(K+) · Na+) of stem and leaf tissues under the soil NaCl stress condition were both increased, following the order of leaf > stem. In conclusion, the findings suggested that the salt- adaptation mechanisms of G. microphylla were root salt-rejection by Na+ accumulation and restriction in root tissue and leaf salt-tolerance by a remarkably increased ability of K+ selective absorption and accumulation in leaf tissue.

[Effects of NaCl stress on photosynthesis characteristics and fast chlorophyll fluorescence induction dynamics of Pistacia chinensis leaves].

By using fast chlorophyll fluorescence induction dynamics analysis technique (JIP-test), this paper studied the photosynthesis characteristics and fast chlorophyll fluorescence induction dynamics of 1-year old Pistacia chinensis seedlings under the stress of NaCl at the concentrations 0% (CK), 0.15%, 0.3%, 0.45%, and 0.6%. With the increasing concentration of NaCl, the contents of Chl a, Chl b, and Chl (a+b) in the seedlings leaves decreased, the Chl a/b ratio decreased after an initial increase, and the carotenoid content increased. The net photosynthetic rate (P(n)) and stomatal conductance (g(s)) decreased gradually with increasing NaCl concentration. The decrease of P(n) was mainly attributed to the stomatal limitation when the NaCl concentration was lower than 0.3%, and to the non-stomatal limitation when the NaCl concentration was higher than 0.3%. The trapped energy flux per RC (TR0/CS0), electron transport flux per RC (ET0/CS0), density of RCs (RC/CS0), and yield or flux ratio (psi(0) or phi(E0)) decreased, but the absorption flux per CS (ABS/CS0) and the K phase (W(k)) and J phase (V) in the O-J-I-P chlorophyll fluorescence induction curves increased distinctly, indicating that NaCl stress damaged the leaf oxygen-evolving complex (OEC), donor sides, and PS II reaction centers. When the NaCl concentration reached 0.3%, the maximum photochemical efficiency (F(v)/F(m)) and performance index (PI(ABS)) decreased 17.7% and 36.6%, respectively, as compared with the control.

[Cold resistance of Pistacia chinensis and Koelreuteria integrifoliola].

Taking one-year-old dormant shoots of Pistacia chinensis and Koelreuteria integrifoliola as test materials and the shoots of northern indigenous tree species K. paniculata as the control, the changes of their membrane-lipid peroxidation, antioxidative enzyme activity, and organic osmoregulatory substance content under artificial cooling were studied, aimed to analyze the differences of the three tree species in cold resistance. With the decrease of temperature, the ion leakage percentage of the three tree species increased in S-shape, and the SOD and POD activities decreased after an initial increase. The MDA, soluble protein, and soluble sugar contents of K. integrifoliola and K. paniculata under decreasing temperature decreased after an initial increase, while those of P. chinensis had an increasing trend. The semi-lethal temperature (LT50 ) of K. paniculata, K. integrifoliola, and P. chinensis calculated by the Logistic equation of ion leakage percentage was -27.2 degrees C, -23.7 degrees C, and -27.0 degrees C, respectively. Among the three tree species, K. paniculata had the strongest cold resistance, followed by P. chinensis, and K. integrifoliola.

[Effects of NaCl stress on Hovenia dulcis and Gleditsia sinensis seedlings growth, chlorophyll fluorescence, and active oxygen metabolism].

With potted Hovenia dulcis and Gleditsia sinensis seedlings as test materials, their plant growth, chlorophyll fluorescence characteristics, and active oxygen metabolism under stress of different concentration (0, 0.15%, 0.30%, 0.45%, and 0.60%) NaCl were studied. The results showed that with increasing concentration of NaCl, the plant growth, leaf chlorophyll content, photochemical efficiency of PS II (Fv/Fm), quantum yield of PS II (phi(PS II)), and photochemical quenching (q(P)) decreased gradually, while the non-photochemical quenching of fluorescence (q(N)) was in adverse. After 10 days of 0. 15% NaCl stress, the leaf chlorophyll content, Fv/Fm, phi(PS II), and q(P) of H. dulcis seedlings decreased by 19.77%, 2.94%, 29.03%, and 8.16%, respectively, with significant differences (P<0.05) to the control, while no significant differences were observed for G. sinensis seedlings. Compared with the control, the Fv/Fm and phi(PS II), of G. sinensis seedlings in treatment 0.30% NaCl decreased significantly by 1.91% and 14.66%, and the chlorophyll content and q(P) of the seedling in treatment 0.45% NaCl decreased significantly by 29.28% and 11.36%, respectively (P<0.05). With increasing concentration of NaCl, the SOD activity of G. sinensis seedlings showed a consistent increasing trend, and that of H. dulcis seedlings increased first and decreased then. The POD and CAT activities of G. sinensis and H. dulci seedlings tended to increase first and decrease then, with the increment being higher for G. sinensis than for H. dulci, while the MDA content of the seedlings had an increasing trend, with the increment being higher for H. dulcis than for G. sinensis, suggesting that the cell membrane lipid peroxidation of H. dulcis was more serious than that of G. sinensis. It was concluded that G. sinensis had greater salt tolerance than H. dulcis, which was related toits higher anti-oxidation enzyme activities.

[Histological observation on programmed cell death in wheat--leaf rust fungus intreactioin].

The ultrastructural features of mesophyll cell surrounding the fungus in different interaction between wheat and Puccinia recondita f. sp tritici were observed with transmission electron microscopy. In incompatible combination(cv. lorvin 10 x race 162), the nuclei gradually became irregular with highly condensed chromatin towards the nuclear envelope, while the chloroplast became swelling since 12 h to 24 h after inoculation(a.i.). At 48 h a.i., the condensation of the chromatin became more prominent and the chloroplast began to disintegrate. Finally, when some mitochondria started to degrade at 72 h a.i., the nuclei and the chloroplast became disruption completely. During the process, endoplasmic reticulum and vesicles did play a vital role in the further degeneration of other organelles and protoplasmic components just similar to the lysosome acting in the animal cells. These results suggest that the ultrastructural feature of cell death is a form of programmed cell death (PCD). In compatible combination (cv. lorvin 10 x race 165), ultrastructural of mesophyll cell exhibited different features from incompatible combination. At 24 h a.i., the plasmic membrane showed sunken and the chloroplast slightly exhibited swelling. Since 48 h to 72 h a.i., most of the swelling chloroplasts were observed while the other organelles still remained unaltered. At the same time, the hypha and haustorium mother cell in the intracellular space also could be observed.