A biophysical elucidation for less toxicity of agglutinin than abrin-a from the seeds of Abrus precatorius in consequence of crystal structure.

X-ray crystal structure determination of agglutinin from Abrus precatorius in Taiwan is presented. The crystal structure of agglutinin, a type II ribosome-inactivating protein (RIP) from the seeds of Abrus precatorius in Taiwan, has been determined from a novel crystalline form by the molecular replacement method using the coordinates of abrin-a as the template. The structure has space group P4(1)2(1)2 with Z = 8, and been refined at 2.6 A to R-factor of 20.4%. The root-mean-square deviations of bond lengths and angles from the standard values are 0.009 A and 1.3 degrees. Primary, secondary, tertiary and quaternary structures of agglutinin have been described and compared with those of abrin-a to a certain extent. In subsequent docking research, we found that Asn200 of abrin-a may form a critical hydrogen bond with G4323 of 28SRNA, while corresponding Pro199 of agglutinin is a kink hydrophobic residue bound with the cleft in a more compact complementary relationship. This may explain the lower toxicity of agglutinin than abrin-a, despite of similarity in secondary structure and the activity cleft of two RIPs.

Polymeric networks of copper(II) using succinate and aromatic N-N donor ligands: synthesis, crystal structure, magnetic behaviour and the effect of weak interactions on their crystal packing.

Four succinato-bridged complexes of copper(II) have been synthesized. Complex 1, [Cu(2)(mu-OH(2))(2)L(bpy)(2)(NO(3))(2)](n) and 2, [Cu(2)(mu-OH(2))(2)L(phen)(2)(NO(3))(2)](n)(bpy = 2,2[prime or minute]-bipyridine; phen = 1,10-phenanthroline and LH(2)= succinic acid) exhibit 1D coordination polymer structures where both the nitrate ions are directly linked to the copper(ii) producing synthons in a 2D sheet. A novel 2D grid-like network, ([Cu(4)L(2)(bpy)(4)(H(2)O)(2)](ClO(4))(4)(H(2)O))n3, is obtained upon changing the nitrate by perchlorate anion in complex 1, where the channels are occupied by the anions. On changing the nitrate by tetrafluoroborate anion in complex 2, a novel octanuclear complex, [Cu(8)L(4)(phen)(12)](BF(4))(8).8H(2)O 4, is isolated. The coligand bpy and phen in these complexes show face-to-face (in 1,2,3,4) or edge-to-face (in 4 )pi-pi interactions forming the multidimensional supramolecular architectures. Interestingly, the appearance of edge-to-face pi-pi interactions in complex facilitates the formation of discrete octanuclear entities. Variable-temperature (300-2 K) magnetic measurements of complexes have been done. Complexes 1 and 2 show very weak antiferromagnetic (OOC-CH(2)-CH(2)-COO) and ferromagnetic coupling (mu-H(2)O). Complex 3 also shows antiferromagnetic (syn-syn mu-OCO), and ferromagnetic coupling (mu-O of the -COO group). Complex 4 with two types (syn-syn and syn-anti) of binding modes of the carboxylate group shows strong antiferromagnetic interaction.

3,3,10,10-tetramethyl-1,2-dithia-5,8-diazacyclodeca-4,8-diene.

The title compound, C(10)H(18)N(2)S(2), acts as an important precursor for the synthesis of the pharmaceutically important diaminedithiol ligand system. The molecule has a local twofold axis and the arrangement of the S(2)N(2) donor atoms in the macrocycle is anticlinal.

Crystal structure of (1,10-phenanthroline-N,N')(1,4,7,10-tetraazacyclododecane-N,N',N",N"')nickel(II) diperchlorate.

The crystal structure of the title compound, [Ni(C8H20N4)(C12H8N2)](ClO4)2, has been determined by X-ray diffraction. The Ni(II) ion is six coordinated with four nitrogen atoms of the tetradentate macrocyclic ligand and two nitrogen atoms of the bidentate ligand in a distorted octahedron geometry. The folded tetradentate macrocyclic ligand adopts a configuration having four five-membered chelate rings in distorted eclipsed conformations. The four hydrogen atoms of the amine groups of the macrocyclic ligand are on the same side towards the bidentate ligand.

Crystal structure of bromo(2,2':6',2"-terpyridine)(2-(phenylazo)-pyridine)ruthenium(II) tetrafluoroborate.

The title compound, C26H20N6BrRu(BF4), crystallizes in the centrosymmetric space group P2(1)/n and consists of discrete complex units. The Ru(II) ion is octahedrally coordinated to one 2,2':6',2"-terpyridine (tpy), one 2-(phenylazo)pyridine (azpy) and a Br atom in trans-axial position at a distance of 2.547(5)A. The shorter Ru-N (azo) distance (1.960(3)A) than the Ru-N(py) distance (2.061(3)A) signifies a strong pi-backbonding, which leads to a longer, N=N (azo) bond (1.304(4)A).

Crystal structure of (2,2'-bipyridine-N,N)(2,2',2''-triaminotriethylamine-N,N',N'',N''')nickel(II) diperchlorate.

An X-ray structure determination shows that the Ni(II) ion is a distorted six-coordinated octahedron by four nitrogen atoms of the tetradentate tren ligand constituting the equatorial square base, and by two nitrogen atoms of the bidentate bpy ligand in a cis position. The two six-membered rings of bpy are coplanar and almost pararell. The tetradentate ligand consists of three five-membered chelate rings in gauche coformations. The Ni-N(tren) bond lengths of this complex are almost equivalent to the reported values.

Magneto-structural xorrelations in 2D and 3D extended structures of manganese(II)-malonate systems.

Two polymeric malonato-bridged manganese(II) complexes of formula [Mn(mal)(H(2)O)(2)](n)() (1) and [Mn(2)(mal)(2)(4,4'-bipy)(H(2)O)(2)](n)() (2) have been synthesized and characterized (mal = malonate dianion; 4,4'-bipy = 4,4'-bipyridine). The crystal structure of complex 1 was already known. Complex 2 crystallizes in monoclinic space group P2(1)/n, Z = 2, with unit cell parameters of a = 7.2974(10) A, b = 18.7715(10) A, c = 7.514(3) A, and beta = 91.743(12) degrees. The structure determination reveals that the complex [Mn(2)(mal)(2)(4,4'-bipy)(H(2)O)(2)](n)() (2) is a 3D network being composed of Mn-malonate sheets which are pillared by bidentate 4,4'-bipy spacer forming small voids. The Mn-Mn distances through Mn-mu-(O3-C8-O4)-Mn, Mn-mu(O1-C6-O2)-Mn, and Mn-mu-4,4'-bipy-Mn bridges are 5.561, 5.410, and 11.723 A, respectively. The magnetic behaviors of complexes 1 and 2 in the temperature range 300-2 K are very close, corresponding to a weak antiferromagnetic coupling. The magnetic pathways of complex 1 are through two Mn-O-C-O-Mn with anti-anti conformation and two Mn-O-C-O-Mn with syn-anti conformations and in complex 2 through all Mn-O-C-O-Mn with syn-anti conformations. Both syn-anti and anti-anti conformations create weak antiferromagnetic coupling, and the susceptibility data are fitted by the expansion series of Lines and the Curély formula for an S = 5/2 antiferromagnetic quadratic layer, based on the exchange Hamiltonian H = -Sigma(nn)()JS(i)()S(j)(). The best fit is given by the superexchange parameters J = -0.32 cm(-)(1) and g = 2.00 for complex 1 and J = -0.14 cm(-)(1), J(inter) = -0.031 cm(-)(1), and g = 2.00 for complex 2. Finally, in both the complexes there is a magnetic pathway Mn-O-C-C-C-O-Mn, and this pathway through the three carbon atoms of the malonato-bridging ligand could be considered negligible.

Synthesis and characterization of luminescent osmium(II) carbonyl complexes based on chelating dibenzoylmethanate and halide ligands.

Octahedral Os(II) complexes 1-5 with formula [Os(CO)3X(dbm)] are prepared through utilization of both solid-state pyrolysis and ligand exchange reactions. These complexes exhibit prominent 3pi-pi* phosphorescence with unusually long lifetimes (29-64 micros) and high quantum yields (0.08-0.13).

(micro-C-meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetraazacyclotetradecane-N-acetato-1kappa(5)N,N',N",N"',O:2kappaO')tetrachloro-1kappaCl,2kappa(3)Cl-cobalt(III)zinc(II).

The crystal structure of the title compound, [CoCl(C(18)H(37)N(4)O(2)){ZnCl(3)}], has been determined by X-ray diffraction.C-meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetraazacyclotetradecane-N-acetate acts as a bridging ligand to coodinate with Co(III) and Zn(II) ions. The Co(III) ion is six-coordinate in a nearly octahedral environment provided by one Cl atom, four N atoms of the bridging ligand, and one O atom. The Zn(II) ion is four-coordinate in a distorted tetrahedral environment completed by three Cl atoms and an O atom of the bridging ligand.