Pore size and organic carbon of biochar limit the carbon sequestration potential of Bacillus cereus SR.

Carbon-fixing functional strain-loaded biochar may have significant potential in carbon sequestration given the global warming situation. The carbon-fixing functional strain Bacillus cereus SR was loaded onto rice straw biochar pyrolyzed at different temperatures with the anticipation of clarifying the carbon sequestration performance of this strain on biochar and the interaction effects with biochar. During the culture period, the content of dissolved organic carbon (DOC), easily oxidizable organic carbon, and microbial biomass carbon in biochar changed. This finding indicated that B. cereus SR utilized organic carbon for survival and enhanced carbon sequestration on biochar to increase organic carbon, manifested by changes in CO2 emissions and ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) enzyme activity. Linear regression analysis showed that the strain was likely to consume DOC on 300 °C biochar, although the Rubisco enzyme activity was higher. In contrast, the strain had a higher carbon sequestration potential on 500 °C biochar. Correlation analysis showed that Rubisco enzyme activity was controlled by the physical structure of the biochar. Our results highlight the differences in the survival mode and carbon sequestration potential of B. cereus SR on biochar pyrolyzed at different temperatures.

Integrated morphological, physiological and transcriptomic analyses reveal response mechanisms of rice under different cadmium exposure routes.

Rice (Oryza sativa) is one of the major cereal crops and takes up cadmium (Cd) more readily than other crops. Understanding the mechanism of Cd uptake and defense in rice can help us avoid Cd in the food chain. However, studies comparing Cd uptake, toxicity, and detoxification mechanisms of leaf and root Cd exposure at the morphological, physiological, and transcriptional levels are still lacking. Therefore, experiments were conducted in this study and found that root Cd exposure resulted in more severe oxidative and photosynthetic damage, lower plant biomass, higher Cd accumulation, and transcriptional changes in rice than leaf Cd exposure. The activation of phenylpropanoids biosynthesis in both root and leaf tissues under different Cd exposure routes suggests that increased lignin is the response mechanism of rice under Cd stress. Moreover, the roots of rice are more sensitive to Cd stress and their adaptation responses are more pronounced than those of leaves. Quantitative PCR revealed that OsPOX, OsCAD, OsPAL and OsCCR play important roles in the response to Cd stress, which further emphasize the importance of lignin. Therefore, this study provides theoretical evidence for future chemical and genetic regulation of lignin biosynthesis in crop plants to reduce Cd accumulation.

Composition of DOM along the depth gradients in the paddy field treated with crop straw for 10 years.

Crop straw return is a widely used agricultural management practice. The addition of crop straw significantly alters the pool of dissolved organic matter (DOM) in agricultural soils and plays a pivotal role in the global carbon (C) cycle, which is sensitive to climate change. The DOM concentration and composition at different soil depths could regulate the turnover and further storage of organic C in terrestrial systems. However, it is still unclear how crop straw return influences the change in DOM composition in rice paddy soils. Therefore, a field experiment was conducted in which paddy soil was amended with crop straw for 10 years. Two crop straw-addition treatments [NPK with 50% crop straw (NPK+1/2S) and NPK with 100% crop straw (NPK + S)], a conventional mineral fertilization control (NPK) and a non-fertilized control were included. Topsoil (0-20 cm) and subsoil (20-40 cm) samples were collected to investigate the soil DOM concentration and compositional structure of the profile. Soil nutrients, iron (Fe) fraction, microbial biomass carbon (MBC), and concentration and optical properties (UV-Vis and fluorescence spectra) of soil DOM were determined. Here, we found that the DOM in the topsoil was more humified than that in the subsoil. The addition of crop straw further decreased the humidification degree of DOM in the subsoil. In crop straw-amended topsoil, microbial decomposition controlled the composition of DOM and induced the formation of aromatic DOM. In the straw-treated subsoil, selective adsorption by poorly crystalline Fe(oxyhydr)oxides and microbial decomposition controlled the composition of DOM. In particular, the formation of protein-like compounds could have played a significant role in the microbial degradation of DOM in the subsoil. Overall, this work conducted a case study within long-term agricultural management to understand the changes in DOM composition along the soil profile, which would be further helpful for evaluating C cycling in agricultural ecosystems.

Multiple insights into lignin-mediated cadmium detoxification in rice (Oryza sativa).

Cadmium (Cd) is readily absorbed by rice and enters the food chain, posing a health risk to humans. A better understanding of the mechanisms of Cd-induced responses in rice will help in developing solutions to reduce Cd uptake in rice. Therefore, this research attempted to reveal the detoxification mechanisms of rice in response to Cd through physiological, transcriptomic and molecular approaches. The results showed that Cd stress restricted rice growth, led to Cd accumulation and H2O2 production, and resulted cell death. Transcriptomic sequencing revealed glutathione and phenylpropanoid were the major metabolic pathways under Cd stress. Physiological studies showed that antioxidant enzyme activities, glutathione and lignin contents were significantly increased under Cd stress. In response to Cd stress, q-PCR results showed that genes related to lignin and glutathione biosynthesis were upregulated, whereas metal transporter genes were downregulated. Further pot experiment with rice cultivars with increased and decreased lignin content confirmed the causal relationship between increased lignin and reduced Cd in rice. This study provides a comprehensive understanding of lignin-mediated detoxification mechanism in rice under Cd stress and explains the function of lignin in production of low-Cd rice to ensure human health and food safety.

Synergistic impacts of ferromanganese oxide biochar and optimized water management on reducing Cd accumulation in rice.

Ferromanganese oxide biochar composite (FMBC) is an efficient remediation material for cadmium -contaminated soils. However, the effect of FMBC under varied water managements on the remediation of Cd-polluted soil is unclear. In this study, we conducted both incubation and field experiments to investigate the combined effects of corn-stover-derived biochar modified with ferromanganese on the immobilization and uptake of Cd by rice under continuous aerobic (A), aerobic-flooded (AF), and flooded-aerobic (FA) water management regimes. The results showed that loading iron-manganese significantly increased the maximum sorption capacity (Qm) of Cd on FMBC (50.46 mg g-1) due to increased surface area, as compared to the pristine biochar (BC, 31.36 mg g-1). The results revealed that soil Eh and pH were significantly affected by FMBC and it's synergistic application with different water regimes, thus causing significant differences in the concentrations of DTPA-extractable Cd under different treatments. The lowest DTPA-extractable Cd content (0.28-0.46 mg-1) was observed in the treatment with FMBC (2.5 %) combined FA water amendment, which reduced the content of available Cd in soil by 2.63-28.4 %. Moreover, the treatments with FMBC-FA resulted the proportion of residual Cd increased by 22.2 % compared to the control. Variations in the content and fraction of Cd had a significant influence on its accumulation in the rice grains. The FMBC-FA treatments reduced the Cd concentration in roots, shoots and grains by 37.97 %, 33.98 %, and 53.66 %, respectively, when compared with the control. Predominantly because of the reduction in Cd biological toxicity and the improved soil nutrient content, the combined application increased the biomass and yield of rice to some extent. Taken together, the combination of the Fe-Mn modified biochar and flooded-aerobic water management may potentially be applied in Cd-polluted soil to mitigate the impacts of Cd on rice production.

The exacerbation of soil acidification correlates with structural and functional succession of the soil microbiome upon agricultural intensification.

Agricultural intensification driven by land-use changes has caused continuous and cumulative soil acidification (SA) throughout the global agroecosystem. Microorganisms mediate acid-generating reactions; however, the microbial mechanisms responsible for exacerbating SA feedback remain largely unknown. To determine the microbial community composition and putative function associated with SA, we conducted a metagenomic analysis of soils across a chronosequence that has elapsed since the conversion of rice-wheat (RW) to rice-vegetable (RV) rotations. Compared to RW rotations, soil pH decreased by 0.50 and 1.56 units (p < 0.05) in response to 10-year and 20-year RV rotations, respectively. Additionally, acid saturation ratios were increased by 7.3% and 36.2% (p < 0.05), respectively. The loss of microbial beta-diversity was a key element that contributed to the exacerbation of SA in the RV. Notably, the 20-year RV-enriched microbial taxa were more hydrogen (H+)-, aluminium (Al3+)-, and nitrate nitrogen (NO3--N) -dependent and contained more genera exhibiting dehydrogenation functions than did RW-enriched taxa. "M00115, M00151, M00417, and M00004" and "M00531 and M00135" that are the "proton-pumping" and "proton-consuming" gene modules, respectively, were linked to the massive recruitment of acid-dependent biomarkers in 20-year RV soils, particularly Rhodanobacter, Gemmatirosa, Sphingomonas, and Streptomyces. Collectively, soils in long-term RV rotations were highly acidified and acid-sensitive, as the enrichment of microbial dehydrogenation genes allowing for soil buffering capacity is more vulnerable to H+ loading and consequently promotes the colonization of more acid-tolerant and acidogenic microbes, and ultimately provide new clues for researchers to elucidate the interaction between SA and the soil microbiome.

Application of a combinatorial approach for soil organic carbon mapping in hills.

Accurate mapping of soil organic carbon (SOC) is critical to improve C management and develop sustainable management policies. However, it is constrained by local variations of the model parameters under complex topography, especially in hills. This study applied a methodological framework to optimize the spatial prediction of SOC in the hilly areas during 1981-2012 by quantifying the relative importance of environmental factors, which include both qualitative factors and quantitative variables. Results showed that SOC increased twofold with a moderate spatial dependence during the past 32 years. During this period, land use patterns, soil groups, topographic factors, and vegetation coverage had significant impacts on the SOC changes (p < 0.01). Specifically, the impact of land use patterns has exceeded the impact of soil groups and became the dominant factor affecting SOC changes. Meanwhile, impacts from the topographic factors and vegetation coverage have substantially declined. Based on those results, a combinatorial approach (LS_RBF_HASM) was developed to map SOC using radial basis function neural network (RBF) and high accuracy surface modelling (HASM), and to generate more detailed spatial mapping relationships between SOC and the affecting factors. Compared with ordinary kriging (OK), land use-soil group units (LS) and HASM combined (LS_HASM), multiple linear regression (MLR) and HASM combined with LS (LS_MLR_HASM); LS_RBF_HASM showed a better performance with a decline of 6.3%-37.7% prediction errors and more accurate spatial patterns due to the quantitative combination of auxiliary environmental variables and more information on the SOC variations within local factors captured by RBF and HASM. Additionally, MLR may partially undermine the relationship of the internal spatial structure due to the highly nonlinear relation between SOC and environmental variables. This methodological framework highlights the optimization of more environmental factors and the calculation of spatial variability within local factors and provides a more accurate approach for SOC mapping in hills.

Loss of organic carbon in suburban soil upon urbanization of Chengdu megacity, China.

Urbanization is progressing rapidly. It can affect soils ecosystem services directly through land management and indirectly through changes in the socioeconomic environment, which eventually leads to an increase in emissions of greenhouse gases. Soil carbon (C) sequestration plays an important role in offsetting the anthropogenic C emissions. However, there is limited knowledge of how urbanization affects the soil C especially that in suburban. In this study, we studied changes in easily oxidizable organic C (EOC) and total organic C (TOC) of suburban soils (0-100 cm) in the rapid urbanising megacity Chengdu, China. The EOC stock and TOC stock decreased from the outer-suburb to the inner-suburb by 17.8-28.2% and 5.4-13.5%, respectively; particularly, the inner-suburb EOC decreased by 31.4-38.6% during the past 10 years. The quotient of EOC/TOC in the soil profile, reflecting the stability of soil C, declined from the outer-suburb (0.78) to the inner-suburb (0.20). Factors that influenced the EOC and TOC included the changes in economics (economic density, industrialization), farmland (cultivated area, farmland structure), urbanization (city size, population growth) and traffic flow. Among which, economic density growth was the primarily driver of the loss in TOC, explaining 31.6% of the variation in soil surface TOC and 16.0% of the variation in subsoil TOC; changes in farmland and urban expansion were the main factors contributing to the loss of subsoil EOC, with 40.4% explanatory ability. In addition, traffic flow also has contribution to the subsoil EOC loss. We concluded that the increasing soil C loss with decreasing distance from the city centre has a continuous contribution to C emission, and the C loss will persist until the suburbs are fully urbanized. The large losses of EOC and TOC caused by urbanization, and their contribution to global warming, necessitate their consideration in future appraisals of climate change and urban planning projects.

Depth-dependent soil organic carbon dynamics of croplands across the Chengdu Plain of China from the 1980s to the 2010s.

Agricultural soils have tremendous potential to sequester soil organic carbon (SOC) and mitigate global climate change. However, agricultural land use has a profound impact on SOC dynamics, and few studies have explored how agricultural land use combined with soil conditions affect SOC changes throughout the soil profile. Based on a paired soil resampling campaign in the 1980s and 2010s, this study investigated the SOC changes of the soil profile caused by agricultural land use and the correlations with parent material and topography across the Chengdu Plain of China. The results showed that the SOC content increased by 3.78 g C/kg in the topsoil (0-20 cm), but decreased in the 20-40 cm and 40-60 cm soil layers by 0.90 and 1.26 g C/kg respectively. SOC increases in topsoil were observed for all types of agricultural land. Afforestation on former agricultural land also caused SOC decreases in the 20-60 cm soil layers, while SOC decreases only occurred in the 40-60 cm soil layer for agricultural land using a traditional crop rotation (i.e. traditional rice-wheat/rapeseed rotation) and with rice-vegetable rotations converted from the traditional rotations. For each agricultural land use, SOC decreases in deep soils only occurred in high relief areas and in soils formed from Q4 (Quaternary Holocene) grey-brown alluvium and Q4 grey alluvium that had a relatively low soil bulk density and clay content. The results indicated that SOC change caused by agricultural land use was depth dependent and that the effects of agricultural land use on soil profile SOC dynamics varied with soil characteristics and topography. Subsoil SOC decreases were more likely to occur in high relief areas and in soils with low soil bulk density and low clay content.

Impacts of agricultural land use change on soil aggregate stability and physical protection of organic C.

Soil aggregate stability and soil organic carbon (SOC) physical sequestration is essential to regulation of anthropogenic climate change. However, relative knowledge remains elusive. The total SOC stock, aggregate stability, capacity of physically protected C, structure of macroaggregates and Al/Fe oxides under rice-wheat rotation (RW), rice-vegetable rotation (RV) and afforested land (AL) were analysed. We chose 1-2 mm macroaggregates for low-temperature ashing (LTA) treatment to mimic natural oxidation to assess the capacity of physically protected C. Using scanning electron microscopy, the N adsorption method, and energy dispersive spectroscopy, we explored the internal structure of macroaggregates under different land use types. All land use types could physically protect over 50% of SOC. AL showed the strongest capacity of C sequestration, followed by RW, which preserved 67.1% and 59.6% of SOC, respectively. After 5 h of LTA treatment, the amount of SOC removed from the macropores in cropland (RW and RV) was higher than that in AL. In micropores with further oxidation, AL and RW both lost only 5% of SOC. Fe oxides were more correlated with C dynamics than Al oxides. Free Fe oxides were associated with the easily oxidised organic matter. Soil aggregate stability significantly correlated with Al/Fe oxides (p < 0.05). The RW and AL had a greater soil aggregate stability than the RV owing to the relatively higher content of Al/Fe oxides. In conclusion, the conversion of RW to RV reduced the mechanical stability of soil aggregates and the capacity of C physical sequestration, while the conversion of RW to AL increased these two properties. Land use change affected C physical sequestration mainly via changes in surface area, pore development and the content of Fe oxides in macroaggregates.

Spatiotemporal variations and factors affecting soil nitrogen in the purple hilly area of Southwest China during the 1980s and the 2010s.

Determination of soil nitrogen distributions and the factors affecting them is critical for nitrogen fertilizer management and prevention of nitrogen pollution. In this paper, the spatiotemporal variations of soil nitrogen and the relative importance of their affecting factors were analysed at a county scale in the purple hilly area of the mid-Sichuan Basin in Southwest China based on soil data collected in 1981 and 2012. Statistical results showed that soil total nitrogen (TN) increased from 0.88 g kg(-1) in 1981 to 1.12 g kg(-1) in 2012, whereas available nitrogen (AN) decreased from 84.22 mg kg(-1) to 74.35 mg kg(-1). In particular, AN showed a significant decrease in agricultural ecosystems but remained stable in woodland and grassland. Correspondingly, most of the study area exhibited increased TN content and decreased AN content in space. The nugget/sill ratios of TN and AN increased from 0.419 to 0.608 and from 0.733 to 0.790, whereas spatial correlation distances decreased from 12.00 km to 9.50 km and from 9.50 km to 9.00 km, respectively, suggesting that the spatial dependence of soil nitrogen became weaker and that the extrinsic factors played increasingly important roles in affecting the soil nitrogen distribution. Soil group and land use type were the two dominant factors in 1981, followed by topographic factors, vegetation coverage and parent material, whereas land use type became the most important factor in 2012, and the relative contribution of topographic factors declined markedly. The results suggested that land use related to cultivation management and fertilizer application was the decisive factor for soil nitrogen change. The increase in TN content and the decrease in AN content over the study period also suggested improper use of nitrogen fertilizer, which can result in nitrogen loss through increasing nitrification rates. Thus, effective measures should be taken to increase the uptake rate of nitrogen and prevent nitrogen pollution.

[Spatial variability of soil nitrogen and related affecting factors at a county scale in hilly area of Mid-Sichuan Basin].

Spatial distribution characteristics of soil total nitrogen ( TN ) and available nitrogen ( AN ) were analyzed by using geostatistical methods and the effects of the influencing factors were quantified by regression analysis based on 555 soil samples collected in RenShou county. The results showed that the contents of soil TN ranged from 0.34-2.57 g x kg(-1) with a mean value of 1.12 g x kg(-1), which indicated the TN of the study area was at a medium level, and AN ranged from 25.86-184.17 mg x kg(-1) with a mean value of 74.35 mg x kg(-1), which indicated the AN of the study area was low. The values of the nugget to sill ratio were 0.608 and 0.790 respectively, which suggestd TN had moderate spatial dependence, which was determined by the co-effects of structural and random factors, while AN was mainly affected by random factors. The contents of TN and AN in north area were much higher than those of south area and distribution of Patchy. The soil parent materials were able to explain 6.3% and 1.0% of TN and AN spatial variability. Soil types explained 26.5% - 36.1% of TN variability and 27.7% - 28.7% of AN variability. Topographical factors explained 5.5% of TN variability and 6.1% of AN variability, the structural factors of soil types reflected spatial variability of nitrogen in the study area. The randomness factors of land use types explained 37.7% of TN variability and 40.0% of AN variability that were much larger than the other factors, which suggested land use had the higherst independent explaining capacity for nitrogen spatial variability among those influence factors and land use type was the main factor to accurately predict the spatial distribution of soil nitrogen in the hilly area of Middle Sichuan Basin.

[Spatial variability of soil C/N ratio and its influence factors at a county scale in hilly area of Mid-Sichuan Basin, Southwest China].

Spatial distribution characteristics of soil C/N ratio and its affecting factors at a county scale in hilly area of Middle Sichuan Basin were analyzed based on field sampling. Result indicated that soil C/N ranged from 4.84 to 21.79, with a mean value of 11.93. The coefficient of variation was 26.3%; which suggested soil C/N had moderate variability in this study area. The ratio of nugget to sill was 73.0%, which suggested the spatial variability of soil C/N was determined by both structural and random factors, and the random factors played a more important role. The soil C/N was higher in northeast and southwest while the central part of the study area was characterized by relatively lower values of soil C/N. The soil C/N ranged from 10.0 to 13.5 in most parts of the study area. Parent material, soil type, topographic factors and land use type had significant impacts on soil C/N (P<0.05). Soil C/N showed a significant positive correlation with elevation and slope (P<0.05). The soil parent materials were able to explain 8.7% of soil C/N spatial variability. The explanatory power of soil group, subgroup and soil genus were 3.8%, 5.0%, 8.7%, respectively. Topographic factors showed the lowest explanatory power of only 0. 8%. However, land use type could explain 23.9% of the spatial variability, which suggested that land use type was the dominant factor in controlling the spatial variability of soil C/N.