RESUMO
The complete nucleotide sequence of RNA 1 of the tentative furovirus peanut clump virus (PCV) has been determined by characterization of cloned cDNA and by direct RNA sequencing. The sequence is 5897 nucleotides in length and contains three long open reading frames (ORFs). The 5'-terminal proximal ORF has the potential to encode a polypeptide of M(r) 130942 (P131) containing methyltransferase and RNA helicase homologous domains and displaying homology with large nonstructural proteins of alpha-like viruses, which are known or thought to be involved in virus replication. The P131 ORF is followed in-frame by a second ORF which is probably expressed by partial readthrough of the UGA termination codon of the P131 ORF to produce a polypeptide of M(r) 191044 (P191). The readthrough region of P191 contains the characteristic 'core' RNA polymerase motif, indicating that the PCV replicase proteins are expressed as a pair of overlapping proteins as in the tobamoviruses, tobraviruses and the furovirus soil-borne wheat mosaic virus (SBWMV). Sequence comparisons indicate that P131 and P191 are most closely related to the replicase proteins of SBWMV and the hordeivirus barley stripe mosaic virus (BSMV) but are only distantly related to the replicase of the furovirus beet necrotic yellow vein virus (BNYVV). The 3'-terminal proximal ORF can encode a putative polypeptide of M(r) 14556 (P15) which displays homology to small cysteine-rich proteins of hordeiviruses and SBWMV. We have corrected four errors in the sequence of PCV RNA 2 published previously by Manohar et al. (Virology 195, 33-41, 1993). One of these changes causes two small ORFs near the 3' terminus of RNA 2 to be fused together to create an ORF for a putative polypeptide of M(r) 16833 (P17) which displays extensive homology with the third protein of the triple gene block of BSMV RNA beta.
Assuntos
Fungos/virologia , Vírus do Mosaico/genética , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , DNA Viral/química , DNA Viral/genética , Dados de Sequência Molecular , Vírus do Mosaico/química , Vírus do Mosaico/classificação , Fases de Leitura Aberta , RNA Viral/química , RNA Viral/genética , Homologia de Sequência de Aminoácidos , Homologia de Sequência do Ácido Nucleico , Proteínas não Estruturais Virais/biossíntese , Proteínas não Estruturais Virais/químicaRESUMO
The complete nucleotide sequence of peanut clump virus RNA 2 has been determined by characterization of cloned cDNA and by direct RNA sequencing. The sequence is 4503 residues in length and contains six long open reading frames (ORFs). The cistron for the coat protein (ORF 1) is located nearest the 5' end of the RNA and is separated from the 5' extremity by a noncoding region of 389 nucleotides. ORF 2 starts one nucleotide upstream of the first residue of the UGA termination codon of the coat protein cistron and encodes a polypeptide of 39300 M(r). Four additional ORFs with the potential to encode polypeptides with approximate M(r)'s of 51,000 (ORF 3), 13,800 (ORF 4), 9400 (ORF 5), and 6800 (ORF 6) are found on the 3' proximal half of the RNA. ORFs 3, 4, and 5 resemble the Triple Gene Block found in potexviruses, carlaviruses, a hordeivirus, and a furovirus. The 276 nucleotide 3' noncoding region of RNA 2 displays extensive sequence homology with the 3' noncoding region of RNA 1. Several peanut clump virus isolates propagated on Nicotiana benthamania contain RNA 2's significantly shorter than that of the type isolate. Partial characterization of two such isolates reveals that their RNA 2's have undergone deletions within ORF 2.
Assuntos
Vírus de Plantas/genética , Vírus de RNA/genética , RNA Viral/genética , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , DNA Viral , Genoma Viral , Dados de Sequência Molecular , Fases de Leitura Aberta , Vírus de Plantas/isolamento & purificação , Vírus de RNA/isolamento & purificação , RNA Viral/isolamento & purificação , Deleção de Sequência , Homologia de Sequência de Aminoácidos , Proteínas Virais/genéticaRESUMO
A double-stranded RNA (ds RNA) with an approximate size of 4.7 kb was found in 6 Phytomonas isolates specifically associated with plant pathogenicity in coconut trees ("Hartrot" disease) and oil palm ("Marchitez sorpressiva" disease). This ds RNA was not detected in 10 non-pathogenic Phytomonas isolates from different lactiferous plants or in the insect trypanosomatids Crithidia and Herpetomonas. Analysis by electron microscopy of a sucrose gradient fraction containing this ds RNA revealed virus-like particles.
