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1.
J Phys Chem B ; 128(15): 3689-3706, 2024 Apr 18.
Artigo em Inglês | MEDLINE | ID: mdl-38588535

RESUMO

NMR-based measurements of the diffusion coefficients and rotation times of solitary water and benzene at 300 K are reported in a diverse collection of 13 conventional organic solvents and 10 imidazolium ionic liquids. Proton chemical shifts of water are found to be correlated to water OH-stretching frequencies, confirming the importance of electrostatic interactions in these shifts. However, the influence of magnetic interactions in aromatic solvents renders chemical shifts a less reliable indicator of electrostatics. Diffusion coefficients (DB) and rotational correlation times (τB) of benzene in the solvents examined are accurately described as functions of viscosity (η) by DB ∝ η-0.81 and τB ∝ η0.64. Literature values of DB and τB in alkane and normal alcohols, which were not included among the solvents studied here, are systematically faster than predicted by these correlations, indicating that factors beyond solvent viscosity play a role in determining the friction on benzene. In contrast to benzene, water diffusion and rotation are poorly described in terms of viscosity alone, even in the dipolar and ionic solvents measured here. The present data and the substantial literature data already available on dilute water diffusion show a systematic dependence of DW on solvent polarity among isoviscous solvents. The aspect of solvent polarity most relevant to water dynamics is the ability of a solvent to accept hydrogen bonds from water, as conveniently quantified by the frequency of water's OH stretching band, ΔνOH. The friction on translation, ζtr = kBT/DW, and rotation, ζrot = kBTτW, are both well correlated by functions of the form ζ(η, ΔνOH) = a1ηa2 exp (a3ΔνOH), where the ai are adjustable parameters. Molecular dynamics simulations reveal a strong coupling between electrostatic and nonelectrostatic water-solvent interactions, which makes it impossible to dissect the friction on water into additive dielectric and hydrodynamic components. Simulations also provide a tentative explanation for the unusual form of the correlating function ζ(η, ΔνOH), at least in the case of ζrot.

2.
J Phys Chem B ; 127(42): 9191-9203, 2023 Oct 26.
Artigo em Inglês | MEDLINE | ID: mdl-37820068

RESUMO

Infrared (IR) spectra of solutions of the lithium salt LiBF4 in diglyme, CH3O(CH2CH2O)2CH3, are studied via IR spectroscopy and ab initio molecular dynamics (AIMD) simulations. Experiments show that the major effects of LiBF4, compared to neat diglyme, are the appearance of a new broad band in the 250-500 cm-1 frequency region and a broadening and intensity enhancement of the diglyme band in the 900-1150 cm-1 region accompanied by a red-shift. Computational analysis indicates that hindered translational motions of Li+ in its solvation cage are mainly responsible for the new far-IR band, while the changes in the mid-IR are due to Li+-coordination-dependent B-F stretching vibrations of BF4- anions coupled with diglyme vibrations. Molecular motions in these and lower frequency regions are generally correlated, revealing the collective nature of the vibrational dynamics, which involve multiple ions/molecules. Herein, a detailed analysis of these features via AIMD simulations of the spectrum and its components, combined with analysis of the generalized normal modes of the solution components, is presented. Other minor spectral changes as well as diglyme conformational changes induced by the lithium salt are also discussed.

3.
J Chem Phys ; 159(3)2023 Jul 21.
Artigo em Inglês | MEDLINE | ID: mdl-37462284

RESUMO

Classical molecular dynamics simulations of water in ionic and dipolar solvents were used to interpret the far-infrared (FIR) rotation/libration spectra of "solitary water" in terms of water's rotational dynamics and interactions with solvents. Seven solvents represented by nonpolarizable all-atom force fields and a series of idealized variable-charge solvents were used to span the range of solvent polarities (hydrogen bonding) studied experimentally. Simulated spectra capture the solvent dependence observed, as well as the relationship between the frequencies of water libration (νL) and OH stretching bands (νOH). In more strongly interacting solvents, simulated νL are ∼20% higher than those of experiment. In all solvents, the simulated spectra are composites of rotational motions about the two axes perpendicular to water's dipole moment, and the different frequencies of these two motions are responsible for the breadth of the libration band and the bimodal shape observed in halide ionic liquids. Simulations overestimate the separation of these two components in most solvents. The character of water rotational motions changes markedly with solvent polarity, from quasi-free rotation in nonpolar and weakly polar solvents to highly constrained libration in strongly hydrogen bonding environments. The changeover to librational motions dominating the spectrum occurs between solvents such as benzene (νL ∼ 250 cm-1) and acetonitrile (νL ∼ 400 cm-1). For solvents in the latter category, the mean frequency of the experimental FIR band provides a direct measure of mean-squared torques and, therefore, force constants associated with interactions constraining water's librational motion.

4.
J Phys Chem B ; 126(46): 9643-9662, 2022 Nov 24.
Artigo em Inglês | MEDLINE | ID: mdl-36326052

RESUMO

Infrared (IR) spectra of solutions of the lithium salt LiBF4 in the ionic liquid 1-ethyl-3-methylimidazolium tetrafluoroborate (EmimBF4) and in the organic solvent propylene carbonate (PC) are studied via infrared spectroscopy and ab initio molecular dynamics (AIMD) simulations. The measurements show that the major effects of LiBF4 in both solutions, compared to their neat counterparts, are the appearance of a new broad band in the 300-450 cm-1 frequency region and a broadening of the IR structure in the 900-1200 cm-1 region with the development of a new peak at 980 cm-1. Computational analysis indicates that hindered translational motions of Li+ in its solvation cage are mainly responsible for the former, while the latter is due to Li+-induced structural changes and accompanying vibrational frequency shifts of constituent ions and molecules of the solutions. In addition, molecular motions in these and lower-frequency regions are generally correlated, disclosing the collective nature of the vibrational dynamics, which involve multiple ions/molecules. Herein, a detailed analysis of these features via AIMD simulations of the spectrum and its components arising from auto- and cross-correlations of motions of constituent molecular species, combined with generalized normal modes of the solutions and normal modes of small Li+-containing clusters, is presented. Other minor spectral changes caused by the lithium salt as well as the interaction-induced effect on IR spectra are also discussed.

5.
J Chem Phys ; 157(8): 084502, 2022 Aug 28.
Artigo em Inglês | MEDLINE | ID: mdl-36050016

RESUMO

In a recent study [J. Phys. Chem. B 126, 4584-4598 (2022)], we have used infrared spectroscopy to investigate the solvation and dynamics of solitary water in ionic liquids and dipolar solvents. Complex shapes observed for water OH-stretching bands, common to all high-polarity solvents, were assigned to water in several solvation states. In the present study, classical molecular dynamics simulations of a single water molecule in four ionic liquids and three dipolar solvents were used to test and refine this interpretation. Consistent with past assignments, simulations show solitary water usually donates two hydrogen bonds to distinct solvent molecules. Such symmetrically solvated water produces the primary pair of peaks identified in the OH spectra of water in nearly all solvents. We had further proposed that additional features flanking this main peak are due to asymmetric solvation states, states in which only one OH group makes a hydrogen bond to solvent. Such states were found in significant concentrations in all of the systems simulated. Simulations of the OH stretching spectra using a semiclassical description and the vibrational map developed by Auer and Skinner [J. Chem. Phys. 128, 224511-224512 (2008)] provided semi-quantitative agreement with experiment. Analysis of species-specific spectra confirmed assignment of the additional features in the experimental spectra to asymmetrically solvated water. The simulations also showed that rapid water motions cause a marked motional narrowing compared with the inhomogeneous limit. This narrowing is largely responsible for making the additional features due to minority solvation states manifest in the spectra.


Assuntos
Líquidos Iônicos , Ligação de Hidrogênio , Líquidos Iônicos/química , Solventes/química , Espectrofotometria Infravermelho/métodos , Água/química
6.
J Phys Chem B ; 126(24): 4584-4598, 2022 06 23.
Artigo em Inglês | MEDLINE | ID: mdl-35687693

RESUMO

Ionic liquids are an emerging class of materials which are finding application in a variety of technologically important areas. Because of their hydrophilic character, at least a small concentration of water is often present when ionic liquids are used in practical applications. This study employs infrared spectroscopy in the OH stretching and libration regions together with DFT calculations to better characterize the state of dilute water in ionic liquids. Water mole fractions (xw ∼ 0.1) are chosen such that nearly all water occurs in monomeric form and spectra probe the solvation structure and dynamics of solitary water molecules. New data are reported for a series of 1-ethyl-3-methylimidazolium liquids [Im21][X] with X- = (C2F5)3F3P-, (CF3SO2)2N-, BF4-, B(CN)4-, CF3SO3-, C2H5SO4-, NO3-, SCN-, and CH3CO2-, as well as for the two 1-hexyl-3-methylimidazolium liquids [Im61][Cl] and [Im61][I]. For comparison, spectra are also recorded in a variety of dipolar solvents, and much of the available literature data are summarized, providing a comprehensive perspective on monomeric water in homogeneous solution. Most prior studies of dilute water in ionic liquids interpreted OH stretching spectra only in terms of water being specifically bonded to two anions in A-···H-O-H···A- type solvates. The more detailed analysis presented here indicates the additional presence of asymmetrically solvated water, which in some cases includes both singly solvated (A-···H-O-H) and more subtle forms of asymmetric solvation. The same pattern of solvation also pertains to dipolar solvents capable of accepting hydrogen bonds from water. No clear distinction is found between OH spectra in high-polarity conventional solvents and ionic liquids. In all solvents, OH frequencies are strongly correlated to measures of solvent basicity or hydrogen bond accepting ability. Far-infrared spectra of the water libration band also show common trends in ionic and dipolar solvents. Despite the different character of the libration and OH modes, the frequencies of these vibrations show virtually the same solvent dependence (apart from sign) except in weakly polar or nonpolar solvents.


Assuntos
Líquidos Iônicos , Líquidos Iônicos/química , Íons , Solventes/química , Espectrofotometria Infravermelho , Água/química
7.
J Phys Chem B ; 124(50): 11431-11445, 2020 12 17.
Artigo em Inglês | MEDLINE | ID: mdl-33275848

RESUMO

Study of electron transfer in ionic liquids is of interest for what it may reveal about the effects of solvent dynamics on electron transfer as well as for helping to inform current efforts to employ ionic liquids as electrolytes in energy-related applications. The present report describes time-resolved fluorescence quenching measurements of electron transfer between electronically excited 7-aminocoumarin dyes and a redox-active pyridinium ionic liquid, 1-butylpyridinium bis(trifluoromethylsulfonyl)imide ([Py4][Tf2N]). Comparable measurements of fluorescence quenching in conventional dipolar solvents were made over 20 years ago, primarily in aromatic amine liquids. Like these prior experiments, use of commercially available coumarin dyes allowed the driving force for electron transfer (-ΔGET) to be varied over a 0.7 V range, leading to electron transfer rates that increase with driving force over the range 1010-1012 s-1. These rates are similar to rates previously measured in aromatic amine solvents, despite the much greater polarity of the ionic liquid, which increases the driving force by more than 0.5 eV. Fluorescence decays of most of the fluorophores in [Py4][Tf2N] were found to be highly non-exponential functions of time, including both subpicosecond components and components in the 102-103 ps range. Such broadly distributed emission dynamics were not observed in prior studies. Emission decays in [Py4][Tf2N] resemble the broadly distributed solvation response characteristic of ionic liquids, suggesting that solvent motions may control the rate of electron transfer, at least in the more slowly reacting dyes. This similarity could be interpreted either in terms of solvent motions being responsible for varying the energy gap or the electronic coupling between the reactant and product states.

9.
J Phys Chem B ; 123(44): 9395-9407, 2019 11 07.
Artigo em Inglês | MEDLINE | ID: mdl-31596593

RESUMO

Ionic liquids are being tested as potential replacements for current electrolytes in energy-related applications. Electron transfer (ET) plays a central role in these applications, making it essential to understand how ET in ionic liquids differs from ET in conventional organic solvents and how these differences affect reaction kinetics. A new intramolecular electron donor-acceptor probe was synthesized by covalently linking the popular photoacceptor coumarin 152 with the donor dimethylaniline to create the dyad "C152-DMA" for potential use in probing dynamical solvent effects in ionic liquids. Molecular dynamics simulations of this dyad show the considerable conformational flexibility of the linker group but over a range of geometries in which the ET rate parameters vary little and should have minimal effect on reaction times >100 ps. Steady-state and time-resolved fluorescence methods show the spectra of C152-DMA to be highly responsive to solvent polarity, with ET rates varying over the range of 108 to 1012 s-1 between nonpolar and high-polarity conventional solvents. The sensitivity to hydrolysis in the presence of acidic impurities limits the dyad's use to ionic liquids of high purity. The results in the few ionic liquids examined here suggest that in addition to solvent polarity, electron transfer in C152-DMA also depends on solvent fluidity or solvation times.

10.
J Chem Phys ; 148(19): 193801, 2018 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-30307175

RESUMO

Time-resolved emission techniques were used to study the excited-state intramolecular electron transfer of 9-(4-biphenyl)-10-methylacridinium (BPAc+) in mixtures of 1-butyl-3-methylimidizolium tetrafluoroborate ([Im41][BF4])+ acetonitrile (ACN), a mixture previously shown to be of nearly constant polarity and nearly ideal mixing behavior. Reaction times (τ rxn) track solvation times (τ solv) as a function of mixture composition over a range of more than 3 orders of magnitude in τ solv. This same correlation extends to a variety of neat dipolar solvents and ionic liquids. Reaction times are ∼2-fold larger than τ solv over most of the range studied but appear to reach a limiting value of ∼3 ps in the fastest solvents.

11.
J Phys Chem Lett ; 9(15): 4174-4181, 2018 Aug 02.
Artigo em Inglês | MEDLINE | ID: mdl-29991264

RESUMO

4'- N, N-Diethylamino-3-hydroxyflavone (DEAHF), due to excited-state intramolecular proton transfer (ESIPT) reaction, exhibits two solvent-dependent emission bands. Because of the slow formation and fast decay of the ground-state tautomer, its population does not accumulate enough for its detection during the normal photocycle. As a result, the details of the ground-state intramolecular proton-transfer (GSIPT) reaction have remained unknown. The present work uses femtosecond pump-dump-probe spectroscopy to prepare the short-lived ground-state tautomer and track this GSIPT process in solution. By simultaneously measuring femtosecond pump-probe and pump-dump-probe spectra, ultrafast kinetics of the ESIPT and GSIPT reactions are obtained. The GSIPT reaction is shown to be a solvent-dependent irreversible two-state process in two solvents, with estimated time constants of 1.7 ps in toluene and 10 ps in the more polar tetrahydrofuran. These results are of great value in both fully describing the photocycle of this four-level proton transfer molecule and for providing a deeper understanding of dynamical solvent effects on tautomerization.

12.
J Phys Chem B ; 122(29): 7385-7393, 2018 07 26.
Artigo em Inglês | MEDLINE | ID: mdl-29953233

RESUMO

To temper their prohibitively high viscosities, ionic liquids are commonly mixed with polar cosolvents to retain favorable physical properties and make them suitable for industrial applications. Molecular dynamics simulations of 1-butyl-3-methylimidazolium tetrafluoroborate ([Im41][BF4]) mixed with acetonitrile (CH3CN) are conducted primarily to test the accuracy of a composite force field (FF) and also to provide some insights into the solvation and frictional characteristics of this mixture. The FF combines the united-atom model for imidazolium ionic liquids of Zhong et al. [ J. Phys. Chem. B 2011, 115, 10027] with the acetonitrile model of Nikitin and Lyubartsev [ J. Comput. Chem. 2007, 28, 2020]. Comparison of simulated properties such as mixture densities, viscosities, electrical conductivities, and component diffusion coefficients to experimental data at 298 K shows that this combined FF provides reasonable accuracy for both static and dynamic properties. Component rotational dynamics, as well as those of a dilute benzene solute, probed via new 2H NMR T1 measurements, are also reasonably reproduced. Simulated coordination numbers reveal virtually random mixing between the [Im41][BF4] and CH3CN components in this system. Comparison of translational diffusion coefficients and rotation times to simple hydrodynamic predictions indicates that the friction on most motions becomes increasingly decoupled from solution viscosity as the [Im41][BF4] concentration increases.

13.
J Phys Chem B ; 122(8): 2379-2388, 2018 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-29377698

RESUMO

Recently, we have reported a systematic study of photoinduced electron-transfer reactions in ionic liquid solvents using neutral and anionic electron donors and a series of cyano-substituted anthracene acceptors [ Wu , B. ; Maroncelli , M. ; Castner , E. W. Jr Photoinduced Bimolecular Electron Transfer in Ionic Liquids . J. Am. Chem. Soc. 139 , 2017 , 14568 ]. Herein, we report complementary results for a cationic class of 1-alkyl-4-dimethylaminopyridinium electron donors. Reductive quenching of cyano-substituted anthracene fluorophores by these cationic quenchers is studied in solutions of acetonitrile and the ionic liquid 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide. Varying the length of the alkyl chain permits tuning of the quencher diffusivities in solution. The observed quenching kinetics are interpreted using a diffusion-reaction analysis. Together with results from the prior study, these results show that the intrinsic electron-transfer rate constant does not depend on the quencher charge in this family of reactions.

14.
J Am Chem Soc ; 139(41): 14568-14585, 2017 10 18.
Artigo em Inglês | MEDLINE | ID: mdl-28921977

RESUMO

The present work seeks to better understand the role of solute diffusion and solvation dynamics on bimolecular electron transfer in ionic liquids (ILs). Steady-state and time-resolved measurements of the reductive fluorescence quenching of five fluorophores ("F") by six quenchers ("Q"; electron donors) are reported in acetonitrile and two ionic liquids, 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)amide and trihexyl(tetradecyl)phosphonium bis(trifluoromethylsulfonyl)amide. Data were collected on 66 different F-Q-solvent systems, which span a 2.0 eV range in driving force and viscosities that vary 1000-fold, enabling stringent tests of bimolecular electron transfer models. A Stern-Volmer analysis yielded much larger diffusion-limited rates than simple kinetic theory predictions in the ILs and the absence of a Marcus turnover. Use of an approximate solution to the spherical diffusion-reaction equation enabled testing of several models for the reaction rate distance dependence. The Smoluchowski and Collins-Kimball models, which assume reaction at a single distance, are able to fit the data collected in acetonitrile solutions reasonably well, but not the data in the IL solvents. An extended sink model, incorporating a finite reaction zone, was able to fit all data satisfactorily with only three adjustable parameters. Diffusion coefficients extracted from these fits were much larger for the neutral versus anionic quenchers and close to predicted values. Molecular dynamics simulations and density-functional methods were then used to explore solvation structures and electronic couplings. The electronic coupling between contact F-Q pairs was found to vary strongly with the relative location and orientation of the reactants. Information from these simulations was used to constrain a model based on classical Marcus theory, which provided physically reasonable fits with only two adjustable parameters, but required systematic reduction of the driving forces in order to suppress a rate turnover at large driving force. The latter requirement indicates that reaction rates in ionic liquids are limited by some factor not properly accounted for in bimolecular electron transfer models based on a spherical diffusion-reaction approach. Small-amplitude motions within contact F-Q pairs, which gate the electronic coupling, are suggested to be the limiting dynamics.

15.
J Phys Chem B ; 121(19): 5094-5109, 2017 05 18.
Artigo em Inglês | MEDLINE | ID: mdl-28429939

RESUMO

Herein are reported temperature-dependent measurements and molecular dynamics simulations designed to investigate the effects of molecular size, shape, and electrostatics on rotational dynamics in ionic liquids. Experiments were performed in the representative ionic liquid 1-butyl-3-methylimadazolium tetrafluoroborate ([Im41][BF4]) and simulations in the generic ionic liquid model ILM2 as well as a more detailed representation of [Im41][BF4]. 2H longitudinal spin relaxation times (T1) were measured for deuterated versions of 1,4-dimethylbenzene, 1-cyano-4-methylbenzene, and 1,4-dimethylpyridinium between 296 and 337 K. Fluorescence anisotropy measurements were made on the larger solutes 9,10-dimethylanthracene, 9-cyano-10-methylanthracence, and 9,10-dimethylacridnium between 240 and 292 K. Both experiment and simulation showed the nonpolar solutes rotate ∼2-fold faster than their dipolar and charged counterparts. The rotational correlation functions measured in fluorescence experiments are significantly nonexponential and can be fit to stretched exponential functions having stretching exponents 0.4 ≤ ß ≤ 0.8, with ß decreasing with decreasing temperature. Rotational correlation times in both the NMR and fluorescence experiments conform approximately to the hydrodynamic expectation τrot ∝ (η/T)p with p ≅ 1, and observed times are reasonably close to slip hydrodynamic predictions. Simulations, even with the idealized ILM2 solvent model, are in semiquantitative agreement with experiment when compared on the basis of equal values of ηT-1. When rotational diffusion coefficients (Di) rather than correlation times were considered, much larger departures from hydrodynamic predictions are found in many cases (p ∼ 0.5 and Di ≫ slip predictions). Rotational van Hove functions and trajectory analyses reveal the importance of large-angle jumps about some axes, even in the larger solutes.

16.
J Phys Chem B ; 121(3): 630-637, 2017 01 26.
Artigo em Inglês | MEDLINE | ID: mdl-28001070

RESUMO

4'-N,N-Diethylamino-3-hydroxyflavone (DEAHF) exhibits dual fluorescence in most solvents as a result of a rapid excited-state intramolecular proton transfer reaction. The high sensitivity of its dual emission to solvent polarity and hydrogen bonding make DEAHF of interest as a ratiometric fluorescence sensor. In addition, prior work has suggested that the rate of this proton transfer should depend on solvent relaxation in an unusual manner. It has been proposed that rapid solvation of the initially excited reactant should retard reaction. The present work tests this idea by using femtosecond Kerr-gated emission spectroscopy to measure the reaction kinetics of DEAHF in mixtures of propylene carbonate (PC) + acetonitrile (ACN). This mixture was chosen to maintain constant solvent polarity and thereby constant reaction energies while varying solvation times ∼10-fold with composition. The reaction kinetics observed in these mixtures are multiexponential, consisting of resolvable components of ∼2 and ∼30 ps and a small fraction of reaction faster than detectable by the 400 fs resolution of the experiment. Average reaction times increase by approximately a factor of 2 as a function of ACN mole fraction, primarily as a result of changes to the slower kinetic component. This trend is opposite to the composition dependence of solvation times, thereby supporting the unusual role of polar solvation dynamics in this proton transfer. In n-alkane solvents, where electrostatic coupling is minimized, frictional properties of the solvent do not influence reaction rates.

17.
J Phys Chem B ; 120(35): 9450-67, 2016 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-27509215

RESUMO

Temperature-dependent (2)H longitudinal spin relaxation times (T1) of dilute benzene-d6 in 1-butyl-3-methylimidazolium tetrafluoroborate ([Im41][BF4]) and two deuterated variants of the 1-ethyl-3-methylimidazolium cation (Im21(+)-d1 and Im21(+)-d6) in 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide ([Im21][Tf2N]), measured at multiple Larmor frequencies, were used to probe rotational dynamics in ionic liquids. Rotational correlation times significantly faster than predicted by slip hydrodynamic calculations were observed for both solutes. Molecular dynamics simulations of these systems enabled extraction of more information about the rotational dynamics from the NMR data than rotation times alone. The multifrequency (2)H T1(T) data could be fit to within uncertainties over a broad region about the T1 minimum using models of the relevant rotational time correlation functions and their viscosity/temperature dependence derived from simulation. Such simulation-guided fitting provided confidence in the semiquantitative accuracy of the simulation models and enabled interpretation of NMR measurements to higher viscosities than previously possible. Simulations of the benzene system were therefore used to explore the nature of solute rotation in ionic liquids and how it might differ from rotation in conventional solvents. Whereas "spinning" about the C6 axis of benzene senses similarly weak solvent friction in both types of solvents, "tumbling" (rotations about in-plane axes) differs significantly in conventional solvents and ionic liquids. In the sluggish environment provided by ionic liquids, orientational caging and the presence of rare but influential large-amplitude (180°) jumps about in-plane axes lead to rotations being markedly nondiffusive, especially below room temperature.

18.
J Phys Chem B ; 120(23): 5146-58, 2016 06 16.
Artigo em Inglês | MEDLINE | ID: mdl-27267433

RESUMO

Stretches of guanines in DNA and RNA can fold into guanine quadruplex structures (GQSs). These structures protect telomeres in DNA and regulate gene expression in RNA. GQSs have an intrinsic fluorescence that is sensitive to different parameters, including loop sequence and length. However, the dependence of GQS fluorescence on solution and sequence parameters and the origin of this fluorescence are poorly understood. Herein we examine effects of dangling nucleotides and cosolute conditions on GQS fluorescence using both steady-state and time-resolved fluorescence spectroscopy. The quantum yield of dGGGTGGGTGGGTGGG, termed "dG3T", is found to be modest at ∼2 × 10(-3). Nevertheless, dG3T and its variants are significantly brighter than the common nucleic acid fluorophore 2-aminopurine (2AP) largely due to their sizable extinction coefficients. Dangling 5'-end nucleotides generally reduce emission and blue-shift the resultant spectrum, whereas dangling 3'-end nucleotides slightly enhance fluorescence, particularly on the red side of the emission band. Time-resolved fluorescence decays are broadly distributed in time and require three exponential components for accurate fits. Time-resolved emission spectra suggest the presence of two emitting populations centered at ∼330 and ∼390 nm, with the redder component being a well-defined long-lived (∼1 ns) entity. Insights into GQS fluorescence obtained here should be useful in designing brighter intrinsic RNA and DNA quadruplexes for use in label-free biotechnological applications.


Assuntos
Corantes Fluorescentes/química , Quadruplex G , Sequência de Bases , Dicroísmo Circular , Oligonucleotídeos/síntese química , Oligonucleotídeos/química , Teoria Quântica , Espectrometria de Fluorescência , Temperatura
19.
J Phys Chem B ; 119(46): 14790-9, 2015 Nov 19.
Artigo em Inglês | MEDLINE | ID: mdl-26501776

RESUMO

Ionic liquids with electron-donating anions are used to investigate rates and mechanisms of photoinduced bimolecular electron transfer to the photoexcited acceptor 9,10-dicyanoanthracene (9,10-DCNA). The set of five cyano anion ILs studied comprises the 1-ethyl-3-methylimidazolium cation paired with each of these five anions: selenocyanate, thiocyanate, dicyanamide, tricyanomethanide, and tetracyanoborate. Measurements with these anions dilute in acetonitrile and 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)amide show that the selenocyanate and tricyanomethanide anions are strong quenchers of the 9,10-DCNA fluorescence, thiocyanate is a moderately strong quencher, dicyanamide is a weak quencher, and no quenching is observed for tetracyanoborate. Quenching rates are obtained from both time-resolved fluorescence transients and time-integrated spectra. Application of a Smoluchowski diffusion-and-reaction model showed that the complex kinetics observed can be fit using only two adjustable parameters, D and V0, where D is the relative diffusion coefficient between donor and acceptor and V0 is the value of the electronic coupling at donor-acceptor contact.


Assuntos
Ânions/química , Líquidos Iônicos , Fotoquímica , Transporte de Elétrons
20.
J Phys Chem B ; 119(29): 8811-2, 2015 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-26202145
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