Cytogenetic mapping of the retroelements Rex1, Rex3 and Rex6 among cichlid fish: new insights on the chromosomal distribution of transposable elements.

To enhance our understanding of the organization of the genome and chromosome evolution of cichlid fish species, we have isolated and physically mapped onto the chromosomes the transposable elements (TEs) Rex1, Rex3 and Rex6, which are conserved in teleost fish, in the chromosomes of African and South American cichlid species. The physical mapping of different Rex elements showed that they are primarily compartmentalized in the pericentromeric heterochromatic regions, although dispersed or clustered signals in euchromatic regions were also observed. The presence of TEs in heterochromatin can be correlated with their role in the structure and organization of heterochromatic areas (such as centromeres) or with the lower selective pressure that act on these gene-poor regions. The Rex elements were also concentrated in the largest chromosome pair of the Nile tilapia, Oreochromis niloticus. This chromosome pair is supposed to have originated by fusions, demonstrating the possible involvement of TEs with chromosome rearrangements. Besides general patterns of chromosomal distribution, comparative analysis suggests that Rex elements could differ in their chromosomal distribution among different fish groups or species and that intrinsic aspects of the genomes could influence the spread, accumulation or elimination of TEs.

Organization of repeated DNA elements in the genome of the cichlid fish Cichla kelberi and its contributions to the knowledge of fish genomes.

Repeated DNA elements have been extensively applied as physical chromosome markers in comparative studies for the identification of chromosomal rearrangements, the identification of sex chromosomes, chromosome evolution analysis and applied genetics. Here, we report the characterization of the transposable elements (TE) Tc1, Rex1, Rex3 and Rex6 and a new element called RCk in the genome of the South American cichlid fish Cichla kelberi using nucleotide sequence analysis and hybridization to metaphase chromosomes. The analysis of the repeated elements demonstrated that they are, in most cases, compartmentalized in heterochromatic regions, as has been observed in several other vertebrates. On the other hand, the elements Rex1 and Rex3 were also observed spanning extensive euchromatic regions on 2 chromosome pairs. The RCk element exhibits a wide distribution among fishes and also in amphibians, and it was spread throughout the chromosomes of C. kelberi. Our results have demonstrated that the compartmentalization of repeated elements is not restricted to heterochromatic segments, which has provided new concepts with regard to the genomic organization of transposons.

Structural chromosome polymorphism in a Pimelodus maculatus La Cepède, 1803 population (Siluriformes, Pimelodidae) from the Paranapanema River basin, PR, Brazil

In the present cytogenetic study of Pimelodus maculatus, 13 specimens (8 males and 5 females) from the Congonhas Stream in Paraná State, Brazil, were examined using conventional staining. All of them showed a karyotype of 2n = 56, with a chromosome distribution of 20m + 20sm + 10st + 6a. However, four individuals (2 males and 2 females) were found to have a variant karyotype (cytotype) with two heteromorphic chromosomes in the group of submetacentric chromosomes - one of them corresponds to the second largest chromosome of this group and the other is a chromosome of small size. This variation suggests the existence of a structural polymorphism in the studied population.

No presente estudo citogenético, foram analisados, mediante coloração convencional, 13 exemplares de Pimelodus maculatus, (8 machos e 5 fêmeas), do ribeirão Congonhas, PR, Brasil. Todos apresentaram um cariótipo com 2n = 56, distribuídos em 20 cromossomos metacêntricos (m), 20 submetacêntricos (sm), 10 subtelocêntricos (st) e 6 acrocêntricos (a). Entretanto, 4 indivíduos (2 machos e 2 fêmeas) apresentaram um cariótipo variante (citótipo) com dois cromossomos heteromórficos no grupo dos submetacêntricos, sendo um deles o segundo maior deste grupo e o outro de tamanho pequeno. Esta variação sugere a ocorrência de um polimorfismo estrutural na população estudada.

Structural chromosome polymorphism in a Pimelodus maculatus La Cepède, 1803 population (Siluriformes, Pimelodidae) from the Paranapanema River basin, PR, Brazil

In the present cytogenetic study of Pimelodus maculatus, 13 specimens (8 males and 5 females) from the Congonhas Stream in Paraná State, Brazil, were examined using conventional staining. All of them showed a karyotype of 2n = 56, with a chromosome distribution of 20m + 20sm + 10st + 6a. However, four individuals (2 males and 2 females) were found to have a variant karyotype (cytotype) with two heteromorphic chromosomes in the group of submetacentric chromosomes - one of them corresponds to the second largest chromosome of this group and the other is a chromosome of small size. This variation suggests the existence of a structural polymorphism in the studied population.

No presente estudo citogenético, foram analisados, mediante coloração convencional, 13 exemplares de Pimelodus maculatus, (8 machos e 5 fêmeas), do ribeirão Congonhas, PR, Brasil. Todos apresentaram um cariótipo com 2n = 56, distribuídos em 20 cromossomos metacêntricos (m), 20 submetacêntricos (sm), 10 subtelocêntricos (st) e 6 acrocêntricos (a). Entretanto, 4 indivíduos (2 machos e 2 fêmeas) apresentaram um cariótipo variante (citótipo) com dois cromossomos heteromórficos no grupo dos submetacêntricos, sendo um deles o segundo maior deste grupo e o outro de tamanho pequeno. Esta variação sugere a ocorrência de um polimorfismo estrutural na população estudada.

Structural chromosome polymorphism in a Pimelodus maculatus La Cepède, 1803 population (Siluriformes, Pimelodidae) from the Paranapanema River basin, PR, Brazil.

In the present cytogenetic study of Pimelodus maculatus, 13 specimens (8 males and 5 females) from the Congonhas Stream in Paraná State, Brazil, were examined using conventional staining. All of them showed a karyotype of 2n=56, with a chromosome distribution of 20m + 20sm + 10st + 6a. However, four individuals (2 males and 2 females) were found to have a variant karyotype (cytotype) with two heteromorphic chromosomes in the group of submetacentric chromosomes--one of them corresponds to the second largest chromosome of this group and the other is a chromosome of small size. This variation suggests the existence of a structural polymorphism in the studied population.