Simulation of experimental synthetic DNA tracer transport through the vadose zone.

Although multiple experimental studies have proven the use of free synthetic DNA as tracers in hydrological systems, their quantitative fate and transport, especially through the vadose zone, is still not well understood. Here we simulate the water flow and breakthrough of deuterium (D) and one free synthetic DNA tracer from a 10-day experiment conducted in a transient variably saturated 1m3 10° sloped lysimeter using the HYDRUS-2D software package. Recovery and breakthrough flux of D (97.78%) and the DNA tracer (1.05%) were captured well with the advection-dispersion equation (R2 = 0.949, NSE = 0.937) and the Schijven and Simunek two-site kinetic sorption model recommended for virus transport modeling (R2 = 0.824, NSE = 0.823), respectively. The degradation of the DNA tracer was very slow (estimated to be 10% in 10 days), because the "loamy sand" porous media in our lysimeter was freshly crushed basaltic tephra (i.e., crushed rocks) and the microbes and DNase that could potentially degrade DNA in regular soils were rare in our "loamy sand". The timing of the concentration peaks and the HYDRUS-2D simulated temporal and spatial distribution of DNA in the lysimeter both revealed the role of the solid-water-air contact lines in mobilizing and carrying DNA tracer under the experimental variably saturated transient flow condition. The free DNA was nearly non-selectively transported through the porous media, and showed a slightly early breakthrough, possibly due to a slight effect of anion exclusion or size exclusion. Our results indicate that free DNA have the potential to trace vadose zone water flow and solute/contaminant transport, and to serve as surrogates to trace viral pathogen pollution in soil-water systems. To our knowledge, this study is the first to simulate transport mechanisms of free synthetic DNA tracers through real soil textured porous media under variably saturated transient flow condition.

Fabrication, detection, and analysis of DNA-labeled PLGA particles for environmental transport studies.

Poly(lactic-co-glycolic acid) (PLGA) particle carriers of synthetic DNA have recently received increased attention for environmental applications due to their biodegradability, customizability, and nearly limitless number of uniquely identifiable "labels". In this paper, we present methodologies for the preparation of DNA-labeled particles, control of particle size, extraction of DNA-labels, and analysis via quantitative polymerase chain reaction (qPCR). Characterization and analysis of the DNA-labeled particles reveal spherical particles of diameters ranging from 60 to 1000 nm, with consistent zeta potentials around -45 mV, that are stable to aggregation, even in the presence of concentrated mono- and divalent cations. A highly correlated and consistent relationship between particle concentration and DNA-label count was observed, with a detection range spanning 7 orders of magnitude, from 0.01 to 10,000 mg/L (10-107 particles/µL). The results of two environmental applications of the DNA-labeled particles are also presented, highlighting their feasibility for use in environmental studies. Whether exploring size-dependent transport phenomena or identifying potential pathogen transport pathways, the DNA-labeled particle approach presented here provides a powerful tool for the identification of overlapping particle signals at a range of concentrations.

The attachment of colloidal particles to environmentally relevant surfaces and the effect of particle shape.

Despite the prevalence of nonspherical colloidal particles, the role of particle shape in the transport of colloids is largely understudied. This study investigates the attachment of colloidal particles onto environmentally relevant surfaces while varying particle shape and ionic strength. Using quartz crystal microbalance and atomic force microscopy measurements, the role of particle shape was elucidated and possible mechanisms discussed. The attachment of both spherical and stretched polystyrene colloidal particles onto a smooth alginate-coated silica surface showed qualitative agreement with DLVO theory. Attachment onto a Harpeth humic acid (HHA) surface, however, significantly deviated from DLVO theory due to its high surface heterogeneity and extended confirmation from the silica surface. This extended confirmation provided increased potential for spherical particle entanglement, while the enlarged major axis of the stretched particles hindered their ability to attach. As ionic strength increased, the HHA layer condensed and provided less potential for spherical particle entanglement and therefore the selectivity for spherical particle attachment vanished. The findings presented in this study suggest that colloidal particle shape may play a complex and important role in predicting the transport of colloidal particles, especially in the presence of natural organic matter-coated surfaces.

nC60 deposition kinetics: the complex contribution of humic acid, ion concentration, and valence.

The demonstrated toxicity coupled with inevitable environmental release of nC60 raise serious concerns about its environmental fate and transport, therefore it is crucial to understand how nC60 will interact with subsurface materials including attached phase soil and sediment organic matter (AP-SOM). This study investigated the attachment of nC60 onto a Harpeth humic acid (HHA) coated silica surface under various solution conditions using a quartz crystal microbalance with dissipation monitoring. The HHA coating greatly enhanced nC60 attachment at low ion concentrations while hindering attachment at high ion concentrations in the presence of both mono and divalent cations. At low ion concentrations, the HHA greatly reduced the surface potential of the silica, enhancing nC60 deposition through reduction in the electrostatic repulsion. At high ion concentrations however, the reduced surface potential became less important due to the near zero energy barrier to deposition and therefore non-DLVO forces dominated, induced by compaction of the HHA layer, and leading to hindered attachment. In this manner, observed contributions from the HHA layer were more complex than previously reported and by monitoring surface charge and calculated DLVO interaction energy alongside attachment experiments, this study advances the mechanistic understanding of the variable attachment contributions from the humic acid layer.

The role of attached phase soil and sediment organic matter physicochemical properties on fullerene (nC60) attachment.

Attached phase soil and sediment organic matter is ubiquitous in the subsurface environment, with a tendency to strongly sorb contaminants, and therefore it may play an important role in contaminant transport. In this study, the deposition of C60 nanoparticles onto attached phase Harpeth Humic Acid and Harpeth Fulvic Acid (HHA and HFA) is explored by using a quartz crystal microbalance with dissipation monitoring and systematically varying thermal energy. By comparing the C60 attachment onto HHA and HFA surfaces to that of bare silica and DLVO predictions, we find that the HHA and HFA layers hinder attachment at low temperatures, while HHA enhances attachment at higher temperatures. Based on thermal characterization of the HHA and HFA layers compared to the corresponding attachment trends, the attachment efficiency is strongly correlated with hydration of the layer. Possible mechanisms explaining this phenomenon include water-assisted disruption of polar SOM contacts and hydration-induced swelling of the AP-SOM matrix. Since humic substances typically dominate subsurface organic matter, these results may prove crucial to understanding the complex interactions of engineered nanomaterials in both the natural and engineered environment.