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1.
PLoS One ; 18(4): e0277379, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37093820

RESUMO

Recent declines of insect populations at high rates have resulted in the need to develop a quick method to determine their diversity and to process massive data for the identification of species of highly diverse groups. A short sequence of DNA from COI is widely used for insect identification by comparing it against sequences of known species. Repositories of sequences are available online with tools that facilitate matching of the sequences of interest to a known individual. However, the performance of these tools can differ. Here we aim to assess the accuracy in identification of insect taxonomic categories from two repositories, BOLD Systems and GenBank. This was done by comparing the sequence matches between the taxonomist identification and the suggested identification from the platforms. We used 1,160 COI sequences representing eight orders of insects from Colombia. After the comparison, we reanalyzed the results from a representative subset of the data from the subfamily Scarabaeinae (Coleoptera). Overall, BOLD systems outperformed GenBank, and the performance of both engines differed by orders and other taxonomic categories (species, genus and family). Higher rates of accurate identification were obtained at family and genus levels. The accuracy was higher in BOLD for the order Coleoptera at family level, for Coleoptera and Lepidoptera at genus and species level. Other orders performed similarly in both repositories. Moreover, the Scarabaeinae subset showed that species were correctly identified only when BOLD match percentage was above 93.4% and a total of 85% of the samples were correctly assigned to a taxonomic category. These results accentuate the great potential of the identification engines to place insects accurately into their respective taxonomic categories based on DNA barcodes and highlight the reliability of BOLD Systems for insect identification in the absence of a large reference database for a highly diverse country.


Assuntos
Besouros , Bases de Dados de Ácidos Nucleicos , Animais , Código de Barras de DNA Taxonômico/métodos , Reprodutibilidade dos Testes , Colômbia , Insetos , DNA/genética , Besouros/genética , Filogenia
2.
Zootaxa ; 4890(4): zootaxa.4890.4.5, 2020 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-33311107

RESUMO

We present a review of Scatimus Erichson (Coleoptera: Scarabaeidae: Scarabaeinae: Ateuchini: Scatimina) in Colombia, with the description of S. strenua new species from the Central Andes (Antioquia Department). Records of S. strandi Balthasar from southwestern Colombia (Caquetá and Nariño Departments) are validated. The distributions of S. ovatus Harold from the Magdalena, Chocó-Darién, and Sierra Nevada de Santa Marta provinces and S. fernandezi Martínez in the eastern foothills of the Eastern Cordillera (Orinoco-Amazon) are confirmed. New departmental records and distribution maps for Colombia are presented; an updated key for the taxonomic identification of Scatimus is included. With a total of four species, Colombia has the second highest Scatimus species richness of any country.


Assuntos
Besouros , Animais , Colômbia
3.
Zootaxa ; 4171(3): 401-438, 2016 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-27701209

RESUMO

The catalog of type specimens of freshwater fishes deposited in the Colección de Peces Dulceacuícolas del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH-P) is presented. This list includes 483 specimens in 65 lots representing 11 holotypes and 472 paratypes of 48 nominal species. Corrections, additions, and updating of information in the original descriptions are included in individual remarks for each catalog number entry and a gallery of pictures of holotypes or paratypes of each nominal species is also presented, which supplements some original descriptions lacking figures of their respective types. An online version of the catalog is available at http://humboldt.org.co/en/servicios/colecciones-biologicas/catalogo-de-tipos.


Assuntos
Peixes/classificação , Animais , Colômbia , Feminino , Peixes/anatomia & histologia , Água Doce , Masculino
4.
Zootaxa ; 3626: 455-76, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-26176150

RESUMO

The external and internal male genitalia of 327 species of 11 tribes of the subfamily Scarabaeinae, including species of Deltochilini, Scarabaeini, Gymnopleurini, Ateuchini, and Coprini, among others, were examined. Descriptions of the variations in the genital segment, the aedeagus, the internal sac, and its sclerites and raspules are presented. An exhaustive comparison of structures, names, and terminology used in literature for Scarabaeinae male genitalia are discussed. The internal sac of the aedeagus is divided in areas for an easer comparison of its internal structures; basal, submedial, medial, and apical areas are described in detail and compared. The variation of apical and medial sclerites, as well as the raspules of the submedial area, are described and compared in detail among all the taxa studied.


Assuntos
Besouros/anatomia & histologia , Animais , Genitália Masculina/anatomia & histologia , Masculino , Terminologia como Assunto
5.
Zookeys ; (210): 75-104, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22859897

RESUMO

A new genus of cynipid oak gallwasp, Zapatella Pujade-Villar & Melika, gen. n. (Hymenoptera: Cynipidae: Cynipini), with two new species, Zapatella grahami Pujade-Villar & Melika, sp. n. and Zapatella nievesaldreyi Melika & Pujade-Villar, sp. n., is described from the Neotropics. Zapatella grahami,known only from the sexual generation,induces galls in acorns of Quercus costaricensis and is currently known only from Costa Rica. Zapatella nievesaldreyi, known only from the asexual generation, induces inconspicuous galls in twigs of Quercus humboldtii, and is known only from Colombia. Diagnostic characters for both new species are given in detail. Five Nearctic species are transferred from Callirhytis to Zapatella: Zapatella cryptica (Weld), comb. n., Zapatella herberti (Weld), comb. n., Zapatella oblata (Weld), comb. n., Zapatella quercusmedullae (Ashmead), comb. n.,Zapatella quercusphellos (Osten Sacken), comb. n. (= Zapatella quercussimilis (Bassett), syn. n.). A key based on adults for the species belonging to Zapatella is also given. Generic limits and morphological characteristics of Zapatella and closely related genera are discussed.

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