Further studies on the lysozyme-like activity of alpha-lactalbumin: development of alternative methods of assay.

Earlier, a sensitive turbidimetric method was reported (H.A. McKenzie and F.H. White, Jr. Biochem. Int. 14, 347-356, 1987), with which evidence was found for weak lysozyme-like activity in alpha-lactalbumin (alpha-LA) against Micrococcus luteus. Alternative methods have been developed for the further study of trace cell-lytic activity, and the results are compared with those of the turbidimetric technique. These methods involve (1) determination of weight loss from a suspension of bacterial cells after exposure to the protein under investigation, and (2) viability studies on the exposed cells. In addition, exposed and control cells were subjected to microscopic examination. Results from all studies were consistent with lysis of cells by alpha-LA as well as by lysozyme. Activities of alpha-LA from the three methods of assay, expressed as ratios to those of lysozyme, were 2.2-5.2 x 10(-5) (mean = 3.6 x 10(-5). The methods were assessed with respect to sources of error characteristic of each and to protein dose requirements for a specified level of cell killing. The turbidimetric approach remains useful for measuring cell-lytic activities as described here. However, caution is urged in its general use.

Tests for character displacement.

Character displacement is an important concept in ecology which has been surrounded by controversy due largely to a lack of clearly stated hypotheses and statistical tests. Existing tests implicity assume random species sizes estimated without error--a random-effects model. We introduce the log-uniform distribution for species sizes and show that it has properties of direct relevance to character displacement. We present tests which assume uniform and log-normal species sizes and have the log-uniform distribution as an alternative. The tests have low power for sample sizes typically encountered in ecology. The effect of estimating species sizes is small. The results exemplify the shortcomings of the traditional random-effects model for species sizes.

Tests for deletion.

It has been suggested in the ecological literature that species may be excluded (or "deleted") from an environment because they do not differ sufficiently from other species in the environment. We develop tests of various deletion hypotheses based on the assumption of a random distribution of species sizes. The results provide information on the behavior of quantities of interest to ecologists studying this phenomenon, namely contiguous ratios, and allow us to gauge the extent of deletion required before we can be confident of detecting it. The results indicate that this random-effects approach leads to tests which have low power for ecological applications but may be more useful in fields which permit larger sample sizes.

Spatial distribution of biochemical parameters indicating biomass and community composition of microbial assemblies in estuarine mud flat sediments.

The spatial distribution of communities was examined in estuarine mud flat sediments by the biochemical analysis of the lipids and lipid components extracted from the sediments. Total phospholipid was used as a measure of total biomass, and fatty acids were used as indicators of community composition. Comparisons were made among 2- by 2-m (location) and 0.2- by 0.2-m (cluster) sampling plots by using a nested analysis of variance to design an optimal sampling strategy to define the microbial content of a large, relatively homogenous area. At two of the three stations, a 2- by 2-m plot was representative of the station, but 0.2- by 0.2-m areas were in no case representative of the station. The biomass measured by the extractable phospholipid and the total lipid palmitic acid showed excellent correlation with the fatty acid "signatures" characteristic of bacteria, but showed a lower correlation with the long-chain polyenoic fatty acids characteristic of the microfauna.