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Proc Natl Acad Sci U S A ; 116(28): 13970-13976, 2019 07 09.
Artigo em Inglês | MEDLINE | ID: mdl-31235604

RESUMO

Microbial conversion of aromatic compounds is an emerging and promising strategy for valorization of the plant biopolymer lignin. A critical and often rate-limiting reaction in aromatic catabolism is O-aryl-demethylation of the abundant aromatic methoxy groups in lignin to form diols, which enables subsequent oxidative aromatic ring-opening. Recently, a cytochrome P450 system, GcoAB, was discovered to demethylate guaiacol (2-methoxyphenol), which can be produced from coniferyl alcohol-derived lignin, to form catechol. However, native GcoAB has minimal ability to demethylate syringol (2,6-dimethoxyphenol), the analogous compound that can be produced from sinapyl alcohol-derived lignin. Despite the abundance of sinapyl alcohol-based lignin in plants, no pathway for syringol catabolism has been reported to date. Here we used structure-guided protein engineering to enable microbial syringol utilization with GcoAB. Specifically, a phenylalanine residue (GcoA-F169) interferes with the binding of syringol in the active site, and on mutation to smaller amino acids, efficient syringol O-demethylation is achieved. Crystallography indicates that syringol adopts a productive binding pose in the variant, which molecular dynamics simulations trace to the elimination of steric clash between the highly flexible side chain of GcoA-F169 and the additional methoxy group of syringol. Finally, we demonstrate in vivo syringol turnover in Pseudomonas putida KT2440 with the GcoA-F169A variant. Taken together, our findings highlight the significant potential and plasticity of cytochrome P450 aromatic O-demethylases in the biological conversion of lignin-derived aromatic compounds.


Assuntos
Sistema Enzimático do Citocromo P-450/genética , Lignina/genética , Engenharia de Proteínas , Pirogalol/análogos & derivados , Sistema Enzimático do Citocromo P-450/química , Lignina/biossíntese , Lignina/metabolismo , Metilação , Oxirredução , Oxirredutases O-Desmetilantes/química , Oxirredutases O-Desmetilantes/genética , Pseudomonas putida/enzimologia , Pseudomonas putida/genética , Pirogalol/química , Pirogalol/metabolismo
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