Complexity of responses to ionizing radiation in plants, and the impact on interacting biotic factors.

In nature, plants are simultaneously exposed to different abiotic (e.g., heat, drought, and salinity) and biotic (e.g., bacteria, fungi, and insects) stresses. Climate change and anthropogenic pressure are expected to intensify the frequency of stress factors. Although plants are well equipped with unique and common defense systems protecting against stressors, they may compromise their growth and development for survival in such challenging environments. Ionizing radiation is a peculiar stress factor capable of causing clustered damage. Radionuclides are both naturally present on the planet and produced by human activities. Natural and artificial radioactivity affects plants on molecular, biochemical, cellular, physiological, populational, and transgenerational levels. Moreover, the fitness of pests, pathogens, and symbionts is concomitantly challenged in radiologically contaminated areas. Plant responses to artificial acute ionizing radiation exposure and laboratory-simulated or field chronic exposure are often discordant. Acute or chronic ionizing radiation exposure may occasionally prime the defense system of plants to better tolerate the biotic stress or could often exhaust their metabolic reserves, making plants more susceptible to pests and pathogens. Currently, these alternatives are only marginally explored. Our review summarizes the available literature on the responses of host plants, biotic factors, and their interaction to ionizing radiation exposure. Such systematic analysis contributes to improved risk assessment in radiologically contaminated areas.

Discovery of alternatively spliced isoforms and long non-coding RNA in full length brain transcriptomes of anadromous Hilsa shad, Tenualosa ilisha (Hamilton, 1822).

BACKGROUND: Full length transcriptomes, achieved through long-read sequencing, along with the isoform analysis can reveal complexities in the gene expression profiles, as well as annotate the transcriptomes of non-model organisms. METHODS AND RESULT: Full length transcripts of brain transcriptome of Tenualosa ilisha, Hilsa shad, were generated through PacBio single molecule real-time sequencing and were characterized. A total of 8.30 Gb clean reads were generated, with PacBio RSII, which resulted in 57,651 high quality consensus transcripts. After removing redundant reads, a total of 19,220 high-quality non-redundant transcripts and 17,341 full length ORF transcripts were classified to 7522 putative ortholog groups. Genes involved in various neural pathways were identified. In addition, isoform clusters and lncRNAs were discovered, along with Hilsa specific transcripts with coding frames and 29,147 SSRs in 944 transcripts (1141 annotated). CONCLUSION: The present study provided, for the first time, a comprehensive view of the alternative isoforms of genes and transcriptome complexity in Hilsa shad brain and forms a rich resource for functional studies in brain of this anadromous fish.

Effect of heat root stress and high salinity on glucosinolates metabolism in wild rocket.

Wild rocket (Diplotaxis tenuifolia L.) is a leafy vegetable appreciated for its characteristic sensory properties which are mainly due to the presence of glucosinolates (GSLs). Short-term exposure to abiotic stresses can induce physiological responses and transcriptional changes which involve GSLs. For this reason, the aim of this work was to study the mechanisms of regulation of GSLs metabolism in rocket subjected to heat stress (40 °C) and high salinity (200 mM NaCl) imposed for up to 48 h. GSLs levels and the expression of methylthioalkylmalate synthase1 (DtMAM1), cytochromeP79F1 (DtCYP79F1), cytochromeP45083A1 (DtCYP83A1), cytosolic-sulfotransferase5b (DtST5b), cytosolic-sulfotransferase5c (DtST5c), flavinmono-oxygenase (DtFMO), myrosinase (DtMyro) and thio-methyl transferase (DtTMT) were analyzed under stress conditions. In addition, the effect on chlorophyll and glucose levels, as well as on chlorophyll a fluorescence were evaluated. Chlorophyll and chlorophyll fluorescence were not affected by the short-term application of stresses. Glucose levels in roots were doubled in response to high salinity, while, in the same organ, GSLs were three fold lower in response to both stresses. The relative content of several aliphatic GSLs was significantly reduced in leaves as a response to both stresses. A key role in GSLs metabolism and in the response to salinity is hypothesized for the gene DtTMT, as it showed an increment in transcripts accumulation (three-fold) consistent with the decrement in the GSLs levels found in salt-exposed leaves and roots. The results obtained in this study can be used in breeding programmes aiming to enhance rocket sensory quality and to improve the resistance to abiotic stresses.

Mining human genome for novel purinergic P2Y receptors: a sequence analysis and molecular modeling approach.

The purinergic P2Y receptors are G-protein coupled receptors (GPCRs) that control many physiological processes by mediating cellular responses to purines, pyrimidines and their analogues. They can be used as potential therapeutic targets in a variety of disease conditions. Therefore, it is critical to identify new members of this family of receptors from the human genome and characterize them for their role in health and disease. In the present work, molecular modeling was carried out for the 21 known P2Y receptors. Binding site analysis was done on the basis of docking and site-directed mutagenesis data. Thus, conserved features of P2Y receptors could be formulated. These features can be used to determine the purinergic nature of potential P2Y receptors in the human genome. We applied this knowledge to human genome GPCR sequences found by sensitive sequence search techniques and identified two orphan receptors, namely GPR34 and GP171 that have all the necessary conserved features of P2Y receptors.