Development of a Low-Cost Distributed Computing Pipeline for High-Throughput Cotton Phenotyping.

In this paper, we present the development of a low-cost distributed computing pipeline for cotton plant phenotyping using Raspberry Pi, Hadoop, and deep learning. Specifically, we use a cluster of several Raspberry Pis in a primary-replica distributed architecture using the Apache Hadoop ecosystem and a pre-trained Tiny-YOLOv4 model for cotton bloom detection from our past work. We feed cotton image data collected from a research field in Tifton, GA, into our cluster's distributed file system for robust file access and distributed, parallel processing. We then submit job requests to our cluster from our client to process cotton image data in a distributed and parallel fashion, from pre-processing to bloom detection and spatio-temporal map creation. Additionally, we present a comparison of our four-node cluster performance with centralized, one-, two-, and three-node clusters. This work is the first to develop a distributed computing pipeline for high-throughput cotton phenotyping in field-based agriculture.

Plant Root Phenotyping Using Deep Conditional GANs and Binary Semantic Segmentation.

This paper develops an approach to perform binary semantic segmentation on Arabidopsis thaliana root images for plant root phenotyping using a conditional generative adversarial network (cGAN) to address pixel-wise class imbalance. Specifically, we use Pix2PixHD, an image-to-image translation cGAN, to generate realistic and high resolution images of plant roots and annotations similar to the original dataset. Furthermore, we use our trained cGAN to triple the size of our original root dataset to reduce pixel-wise class imbalance. We then feed both the original and generated datasets into SegNet to semantically segment the root pixels from the background. Furthermore, we postprocess our segmentation results to close small, apparent gaps along the main and lateral roots. Lastly, we present a comparison of our binary semantic segmentation approach with the state-of-the-art in root segmentation. Our efforts demonstrate that cGAN can produce realistic and high resolution root images, reduce pixel-wise class imbalance, and our segmentation model yields high testing accuracy (of over 99%), low cross entropy error (of less than 2%), high Dice Score (of near 0.80), and low inference time for near real-time processing.

Development and Implementation of an IoT-Enabled Optimal and Predictive Lighting Control Strategy in Greenhouses.

Global population growth has increased food production challenges and pushed agricultural systems to deploy the Internet of Things (IoT) instead of using conventional approaches. Controlling the environmental parameters, including light, in greenhouses increases the crop yield; nonetheless, the electricity cost of supplemental lighting can be high, and hence, the importance of applying cost-effective lighting methods arises. In this research paper, a new optimal supplemental lighting approach was developed and implemented in a research greenhouse by adopting IoT technology. The proposed approach minimizes electricity cost by leveraging a Markov-based sunlight prediction, plant light needs, and a variable electricity price profile. Two experimental studies were conducted inside a greenhouse with "Green Towers" lettuce (Lactuca sativa) during winter and spring in Athens, GA, USA. The experimental results showed that compared to a heuristic method that provides light to reach a predetermined threshold at each time step, our strategy reduced the cost by 4.16% and 33.85% during the winter and spring study, respectively. A paired t-test was performed on the growth parameter measurements; it was determined that the two methods did not have different results in terms of growth. In conclusion, the proposed lighting approach reduced electricity cost while maintaining crop growth.

LPV modeling of nonlinear systems: A multi-path feedback linearization approach.

This article introduces a systematic approach to synthesize linear parameter-varying (LPV) representations of nonlinear (NL) systems which are described by input affine state-space (SS) representations. The conversion approach results in LPV-SS representations in the observable canonical form. Based on the relative degree concept, first the SS description of a given NL representation is transformed to a normal form. In the SISO case, all nonlinearities of the original system are embedded into one NL function, which is factorized, based on a proposed algorithm, to construct an LPV representation of the original NL system. The overall procedure yields an LPV model in which the scheduling variable depends on the inputs and outputs of the system and their derivatives, achieving a practically applicable transformation of the model in case of low order derivatives. In addition, if the states of the NL model can be measured or estimated, then a modified procedure is proposed to provide LPV models scheduled by these states. Examples are included to demonstrate both approaches.

Real-Time Plant Leaf Counting Using Deep Object Detection Networks.

The use of deep neural networks (DNNs) in plant phenotyping has recently received considerable attention. By using DNNs, valuable insights into plant traits can be readily achieved. While these networks have made considerable advances in plant phenotyping, the results are processed too slowly to allow for real-time decision-making. Therefore, being able to perform plant phenotyping computations in real-time has become a critical part of precision agriculture and agricultural informatics. In this work, we utilize state-of-the-art object detection networks to accurately detect, count, and localize plant leaves in real-time. Our work includes the creation of an annotated dataset of Arabidopsis plants captured using Cannon Rebel XS camera. These images and annotations have been complied and made publicly available. This dataset is then fed into a Tiny-YOLOv3 network for training. The Tiny-YOLOv3 network is then able to converge and accurately perform real-time localization and counting of the leaves. We also create a simple robotics platform based on an Android phone and iRobot create2 to demonstrate the real-time capabilities of the network in the greenhouse. Additionally, a performance comparison is conducted between Tiny-YOLOv3 and Faster R-CNN. Unlike Tiny-YOLOv3, which is a single network that does localization and identification in a single pass, the Faster R-CNN network requires two steps to do localization and identification. While with Tiny-YOLOv3, inference time, F1 Score, and false positive rate (FPR) are improved compared to Faster R-CNN, other measures such as difference in count (DiC) and AP are worsened. Specifically, for our implementation of Tiny-YOLOv3, the inference time is under 0.01 s, the F1 Score is over 0.94, and the FPR is around 24%. Last, transfer learning using Tiny-YOLOv3 to detect larger leaves on a model trained only on smaller leaves is implemented. The main contributions of the paper are in creating dataset (shared with the research community), as well as the trained Tiny-YOLOv3 network for leaf localization and counting.