Anoxygenic photosynthesis and iron-sulfur metabolic potential of Chlorobia populations from seasonally anoxic Boreal Shield lakes.

Aquatic environments with high levels of dissolved ferrous iron and low levels of sulfate serve as an important systems for exploring biogeochemical processes relevant to the early Earth. Boreal Shield lakes, which number in the tens of millions globally, commonly develop seasonally anoxic waters that become iron rich and sulfate poor, yet the iron-sulfur microbiology of these systems has been poorly examined. Here we use genome-resolved metagenomics and enrichment cultivation to explore the metabolic diversity and ecology of anoxygenic photosynthesis and iron/sulfur cycling in the anoxic water columns of three Boreal Shield lakes. We recovered four high-completeness and low-contamination draft genome bins assigned to the class Chlorobia (formerly phylum Chlorobi) from environmental metagenome data and enriched two novel sulfide-oxidizing species, also from the Chlorobia. The sequenced genomes of both enriched species, including the novel "Candidatus Chlorobium canadense", encoded the cyc2 gene that is associated with photoferrotrophy among cultured Chlorobia members, along with genes for phototrophic sulfide oxidation. One environmental genome bin also encoded cyc2. Despite the presence of cyc2 in the corresponding draft genome, we were unable to induce photoferrotrophy in "Ca. Chlorobium canadense". Genomic potential for phototrophic sulfide oxidation was more commonly detected than cyc2 among environmental genome bins of Chlorobia, and metagenome and cultivation data suggested the potential for cryptic sulfur cycling to fuel sulfide-based growth. Overall, our results provide an important basis for further probing the functional role of cyc2 and indicate that anoxygenic photoautotrophs in Boreal Shield lakes could have underexplored photophysiology pertinent to understanding Earth's early microbial communities.

Millions of Boreal Shield Lakes can be used to Probe Archaean Ocean Biogeochemistry.

Life originated in Archaean oceans, almost 4 billion years ago, in the absence of oxygen and the presence of high dissolved iron concentrations. Early Earth oxidation is marked globally by extensive banded iron formations but the contributing processes and timing remain controversial. Very few aquatic habitats have been discovered that match key physico-chemical parameters of the early Archaean Ocean. All previous whole ecosystem Archaean analogue studies have been confined to rare, low sulfur, and permanently stratified lakes. Here we provide first evidence that millions of Boreal Shield lakes with natural anoxia offer the opportunity to constrain biogeochemical and microbiological aspects of early Archaean life. Specifically, we combined novel isotopic signatures and nucleic acid sequence data to examine processes in the anoxic zone of stratified boreal lakes that are naturally low in sulfur and rich in ferrous iron, hallmark characteristics predicted for the Archaean Ocean. Anoxygenic photosynthesis was prominent in total water column biogeochemistry, marked by distinctive patterns in natural abundance isotopes of carbon, nitrogen, and iron. These processes are robust, returning reproducibly after water column re-oxygenation following lake turnover. Evidence of coupled iron oxidation, iron reduction, and methane oxidation affect current paradigms of both early Earth and modern aquatic ecosystems.

Uncertainty assessments and hydrological implications of climate change in two adjacent agricultural catchments of a rapidly urbanizing watershed.

Lake Simcoe is the most important inland lake in Southern Ontario. The watershed is predominantly agricultural and under increasing pressure from urbanization, leading to changing runoff patterns in rivers draining to the lake. Uncertainties in rainfall-runoff modeling in tributary catchments of the Lake Simcoe Watershed (LSW) can be an order of magnitude larger than pristine watersheds, hampering water quality predictions and export calculations. Here we conduct a robust assessment to constrain the uncertainty in hydrological simulations and projections in the LSW using two representative adjacent agricultural catchments. Downscaled CGCM 3 projections using A1B and A2 emission scenarios projected increases of 4°C in air temperature and a 26% longer growing season. The fraction of precipitation falling as snow will decrease. Spring runoff is an important event in LSW but individual HBV best calibrated parameter sets under-predicted peak flows by up to 32%. Using an ensemble of behavioral parameter sets achieved credible representations of present day hydrology and constrained uncertainties in future projections. Parameter uncertainty analysis showed that the catchments differ in terms of their snow accumulation/melt and groundwater dynamics. Human activities exacerbate the differences in hydrological response. Model parameterization in one catchment could not generate credible hydrological simulations in the other. We cautioned against extrapolating results from monitored to ungauged catchments in managed watersheds like the LSW.

Modelling the long term impact of climate change on the carbon budget of Lake Simcoe, Ontario using INCA-C.

This study presents a process-based model of dissolved organic carbon concentration ([DOC]) in catchments draining into Lake Simcoe, Ontario. INCA-C, the Integrated Catchment model for Carbon, incorporates carbon biogeochemical processes in a terrestrial system with hydrologic flow paths to simulate watershed wide [DOC]. The model successfully simulates present-day inter-annual and seasonal [DOC] dynamics in tributaries draining catchments with mixed or contrasting land cover in the Lake Simcoe watershed (LSW). The sensitivity of INCA-C to soil moisture, hydrologic controls and land uses within a watershed demonstrates its significance as a tool to explore pertinent environmental issues specific to the LSW. Projections of climate change under A1B and A2 SRES scenarios suggest a continuous monotonic increase in [DOC] in surface waters draining into Lake Simcoe. Large variations in seasonal DOC dynamics are predicted to occur during summer with a possibility of displacement of summer [DOC] maxima towards winter and a prolongation of summer [DOC] levels into the autumn. INCA-C also predicts possible increases in dissolved inorganic carbon in some tributaries with rising temperature suggesting increased CO(2) emissions from rivers as climate changes.

Method for determining the temporal response of microbial phosphate transport affinity.

Nutrient transport affinities of nutrient-starved microbial populations were measured as initial slopes of plots of limiting-nutrient transport rates versus extracellular limiting-nutrient concentrations. A method was devised for the determination of soluble reactive phosphate (Pi) affinity in Pi-limited continuous culture (aT), which was then used as an indicator of the effects of light/dark cycle (LD) perturbations on the temporal Pi transport abilities of three species of freshwater algae. Cell division was asynchronous for the green alga Selenastrum capricornutum grown in continuous cultures exposed to LD cycles. An apparent rhythm in aT for Pi was greatly affected by the population size parameter. Cell division was phased for the green alga Scenedesmus quadricauda grown in LD continuous culture. A rhythm in aT for Pi was not greatly affected by the biomass parameter. Cell division was also phased in LD continuous culture for the blue-green alga (cyanobacterium) Synechococcus Nägeli, but rhythms in other parameters could not be detected. Synechococcus Nägeli was an extremely efficient Pi transporter at low Pi concentrations in LD continuous culture, and so aT could not be calculated. The results demonstrate that aT is well suited to describing the temporal response of Pi transport in LD-perturbed, Pi-limited continuous culture.