Ecological landscape explains aquifers microbial structure.

Aquifers have significant social, economic, and ecological importance. They supply 30 % of the freshwater for human consumption worldwide, including agricultural and industrial use. Despite aquifers' importance, the relationships between aquifer categories and their inhabiting microbial communities are still unknown. Characterizing variations within microbial communities' function and taxonomy structure at different aquifers could give a panoramic view of patterns that may enable the detection and prediction of environmental impact caused by multiple sources. Using publicly available shotgun metagenomic datasets, we examined whether soil properties, land use, and climate variables would have a more significant influence on the taxonomy and functional structure of the microbial communities than the ecological landscapes of the aquifer (i.e., Karst, Porous, Saline, Geyser, and Porous Contaminated). We found that these categories are stronger predictors of microbial communities' structure than geographical localization. In addition, our results show that microbial richness and dominance patterns are the opposite of those found in multicellular life, where extreme habitats harbour richer functional and taxonomic microbial communities. We found that low-abundant and recently described candidate taxa, such as the chemolithoautotrophic genus Candidatus Altiarcheum and the Candidate phylum Parcubacteria, are the main contributors to aquifer microbial communities' dissimilarities. Genes related to gram-negative bacteria proteins, cell wall structures, and phage activity were the primary contributors to aquifer microbial communities' dissimilarities among the aquifers' ecological landscapes. The results reported in the present study highlight the utility of using ecological landscapes for investigating aquifer microbial communities. In addition, we suggest that functions played by recently described and low abundant bacterial groups need further investigation once they might affect water quality, geochemical cycles, and the effects of anthropogenic disturbances such as pollution and climatic events on aquifers.

Integrating Computational Methods to Investigate the Macroecology of Microbiomes.

Studies in microbiology have long been mostly restricted to small spatial scales. However, recent technological advances, such as new sequencing methodologies, have ushered an era of large-scale sequencing of environmental DNA data from multiple biomes worldwide. These global datasets can now be used to explore long standing questions of microbial ecology. New methodological approaches and concepts are being developed to study such large-scale patterns in microbial communities, resulting in new perspectives that represent a significant advances for both microbiology and macroecology. Here, we identify and review important conceptual, computational, and methodological challenges and opportunities in microbial macroecology. Specifically, we discuss the challenges of handling and analyzing large amounts of microbiome data to understand taxa distribution and co-occurrence patterns. We also discuss approaches for modeling microbial communities based on environmental data, including information on biological interactions to make full use of available Big Data. Finally, we summarize the methods presented in a general approach aimed to aid microbiologists in addressing fundamental questions in microbial macroecology, including classical propositions (such as "everything is everywhere, but the environment selects") as well as applied ecological problems, such as those posed by human induced global environmental changes.

Influence of landscape structure on Euglossini composition in open vegetation environments / Influência da estrutura da paisagem na composição de Euglossini em ambientes com vegetação aberta

Abstract The fauna of Euglossini bees is poorly known in savanna regions, making it difficult to understand how these bees use open vegetation environments. The aim of this study was to evaluate the influence of landscape structure on species abundance and composition of Euglossini bees in naturally heterogeneous savanna landscapes. Nine sites were sampled monthly using six traps with chemical baits. Three aromatic essences (eucalyptol, methyl salicylate and vanillin) were used to attract the Euglossini. Surrounding environmental conditions were measured using three independent variables, calculated in multiple scales: index of local vegetation and two landscape indices (Shannon Diversity and area-weighted shape). We compared the competing hypotheses through model selection based on Second-order Akaike Information Criterion (AICc). The four competing hypothesis were: (1) The local vegetation complexity favors Euglossini bees species richness and/or abundance (local vegetation hypothesis); (2) The proportion of the native vegetation types favors Euglossini bees species richness and/or abundance (habitat amount hypothesis); (3) Higher landscape diversity shall increase species richness of Euglossini bees (landscape heterogeneity hypothesis); (4) More complex landscape configuration shall favor the Euglossini bees richness and/or abundance (landscape heterogeneity hypothesis). We sampled 647 individuals belonging to six species of two distinct genera. Our results support the habitat amount hypothesis since bees’ abundance was strongly related with the proportion of habitat in the surrounding landscape. This may be related to the availability of floral and nesting resources in some types of savanna vegetation.

Resumo A fauna das abelhas da tribo Euglossini é pouco conhecida em regiões de savana, tornando difícil a compreensão de como essas abelhas usam ambientes com vegetação aberta. O objetivo desse estudo foi avaliar a influência da estrutura da paisagem na abundância e composição de espécies de abelhas Euglossini em paisagens naturalmente heterogêneas de savana. Nove locais foram amostrados mensalmente utilizando seis armadilhas com iscas químicas. As essências eucaliptol, salicilato de metila e vanilina foram utilizadas para atrair os machos de Euglossini. As condições ambientais foram medidas usando três variáveis, calculadas em múltiplas escalas: índice de vegetação local e dois índices de paisagem (diversidade de Shannon e o índice de forma ponderado pela área). Através da seleção de modelos baseada no critério de informação de Akaike de segunda ordem (AICc) comparamos as hipóteses alternativas: (1) Vegetação local mais complexa favorece as abelhas Euglossini (hipótese da vegetação local); (2) A proporção dos tipos de vegetação nativas favorece as abelhas Euglossini (hipótese da quantidade habitat); (3) A diversidade da paisagem favorece a riqueza de espécies de abelhas Euglossini (hipótese da heterogeneidade da paisagem); (4) Configuração mais complexa da paisagem favorece a riqueza e/ou abundância de abelhas Euglossini (hipótese da heterogeneidade paisagem). Nós amostramos 647 indivíduos pertencentes a seis espécies de dois gêneros distintos. Nossos resultados apoiam a hipótese de quantidade de habitat já que a abundância das abelhas foi fortemente relacionada com a proporção de habitat nas paisagens circundantes. Esses resultados podem estar relacionados com a disponibilidade de recursos florais e substratos para nidificação em alguns tipos de savana.

Spatial heterogeneity regulates plant-pollinator networks across multiple landscape scales.

Mutualistic plant-pollinator interactions play a key role in biodiversity conservation and ecosystem functioning. In a community, the combination of these interactions can generate emergent properties, e.g., robustness and resilience to disturbances such as fluctuations in populations and extinctions. Given that these systems are hierarchical and complex, environmental changes must have multiple levels of influence. In addition, changes in habitat quality and in the landscape structure are important threats to plants, pollinators and their interactions. However, despite the importance of these phenomena for the understanding of biological systems, as well as for conservation and management strategies, few studies have empirically evaluated these effects at the network level. Therefore, the objective of this study was to investigate the influence of local conditions and landscape structure at multiple scales on the characteristics of plant-pollinator networks. This study was conducted in agri-natural lands in Chapada Diamantina, Bahia, Brazil. Pollinators were collected in 27 sampling units distributed orthogonally along a gradient of proportion of agriculture and landscape diversity. The Akaike information criterion was used to select models that best fit the metrics for network characteristics, comparing four hypotheses represented by a set of a priori candidate models with specific combinations of the proportion of agriculture, the average shape of the landscape elements, the diversity of the landscape and the structure of local vegetation. The results indicate that a reduction of habitat quality and landscape heterogeneity can cause species loss and decrease of networks nestedness. These structural changes can reduce robustness and resilience of plant-pollinator networks what compromises the reproductive success of plants, the maintenance of biodiversity and the pollination service stability. We also discuss the possible explanations for these relationships and the implications for landscape planning in agricultural areas.