Phylogenomics recovers multiple origins of portable case making in caddisflies (Insecta: Trichoptera), nature's underwater architects.

Caddisflies (Trichoptera) are among the most diverse groups of freshwater animals with more than 16 000 described species. They play a fundamental role in freshwater ecology and environmental engineering in streams, rivers and lakes. Because of this, they are frequently used as indicator organisms in biomonitoring programmes. Despite their importance, key questions concerning the evolutionary history of caddisflies, such as the timing and origin of larval case making, remain unanswered owing to the lack of a well-resolved phylogeny. Here, we estimated a phylogenetic tree using a combination of transcriptomes and targeted enrichment data for 207 species, representing 48 of 52 extant families and 174 genera. We calibrated and dated the tree with 33 carefully selected fossils. The first caddisflies originated approximately 295 million years ago in the Permian, and major suborders began to diversify in the Triassic. Furthermore, we show that portable case making evolved in three separate lineages, and shifts in diversification occurred in concert with key evolutionary innovations beyond case making.

Calamoceras sp. nov. (Trichoptera: Calamoceratidae) from the Western Rif area, Morocco.

We describe a new species of the genus Calamoceras which currently has only two species: Calamoceras illiesi Malicky & Kumanski 1974 and Calamoceras marsupus Brauer 1865. We also discuss its ecology by analyzing some biophysical parameters. The larva and the adult of this new species, Calamoceras riffensis sp. nov. have been found by specialists from the Rif region in northwestern Morocco since 1998. All the specimens collected differ from the two known species by conspicuous morphological differences.

Associating life stages and sexes of Nearctic Polycentropus Curtis, 1835 (Trichoptera: Polycentropodidae) using mitochondrial DNA barcoding.

Alpha taxonomy of caddisflies (order Trichoptera) is based primarily on male genital morphology. As such, associations of adult females and other life stages typically require conclusive association with the species' identifiable male. The aim of this study was to use molecular methods to associate females and larvae of Polycentropus species represented in the Nearctic. Analysis of mtCOI sequences using distance- and tree-based methods resulted in the association of larvae for 14 species of Polycentropus (P. alabamensis Hamilton, Harris & Lago, 1990, P. blicklei Ross & Yamamoto 1965, P. carlsoni Morse 1971, P. carolinensis Banks 1905, P. colei Ross 1941, P. confusus Hagen 1861, P. denningi Smith 1962, P. elarus Ross 1944, P. gertschi Denning 1950, Polycentropus halidus Milne 1936, P. maculatus Banks 1908, P. pentus Ross 1941, P. rickeri Yamamoto 1966, and P. variegatus Banks 1900) and females for 2 species (P. carolinensis and P. chelatus Ross & Yamamoto 1965). Searches for, and descriptions of, diagnostic morphological characters for these previously unidentifiable life forms are now possible. The identity of the larva of P. centralis Banks, 1914 is confirmed and some interesting phylogenetic relationships and a possible cryptic species and potential synonyms are implied in the results. Targets for future immature- and female-male associations are discussed along with a preliminary assessment of morphological differences among larvae.

Caddisflies (Trichoptera) of Mongolia: an updated checklist with faunistic and biogeographical notes.

To establish the biogeographic affinities of the caddisfly fauna of Mongolia, published records and results of our faunistic studies were analyzed. This study captured more than 47,000 adults collected from 386 locations beside lakes, ponds, streams/rivers, and springs in ten sub-basins of Mongolia using Malaise traps, aerial sweeping, and ultraviolet lights. In total, 201 species have been recorded, and approximately 269 species may occur in Mongolia according to our estimation. In a comparison of species richness for the family level, the Limnephilidae and Leptoceridae were the richest in species. The families Brachycentridae, Glossosomatidae, and Psychomyiidae had low species richness, but they included the most dominant species in terms of abundance and/or the percentage of occurrence in the samples from multiple sub-basins. Comparing the sub-basins, the Selenge had the highest Shannon diversity (H' = 3.3) and the Gobi sub-basin had the lowest (H' = 1.5). According to the Jaccard index of similarity, caddisfly species assemblages of Mongolia's ten sub-basins were divided into two main groups: One group includes the Selenge, Shishkhed, Bulgan, Tes, and Depression of Great Lakes sub-basins; the other group includes the Kherlen, Onon, Khalkh Gol, Valley of Lakes, and Gobi sub-basins. The majority of Mongolian species were composed of East Palearctic taxa, with a small percentage of West Palearctic and Nearctic representatives and an even smaller percentage from the Oriental region, suggesting that the Mongolian Gobi Desert is, and has been, a significant barrier to the distribution of caddisfly species between China and Mongolia.

Distribution of Ecnomus McLachlan, 1864 (Trichoptera, Ecnomidae) from the Lower Mekong River with a description of Ecnomusstungtrengensis new species.

Background: Trichoptera were surveyed from four different physiographic regions of the Lower Mekong River, including the Northern Highlands, the Khorat Plateau, the Tonle Sap Basin and the Mekong Delta in Myanmar, Laos, Thailand, Cambodia and Vietnam. New information: Twenty-three species of the genus Ecnomus, including a new species, were identified and mapped. Ecnomusmammus Malicky & Chantaramongkol, 1993 is a common species which is found from Tonle Sab Basin and Mekong Delta. Ecnomusalkmene Malicky & Chantaramongkol, 1997, E.volovicus Malicky & Chantaramongkol, 1993 and Ecnomusquordaio Malicky, 1993 are the common species in the area of the Northern Highlands and the Khorat Plateau. Ecnomusplotin Malicky & Laudee 2010 is found in the Mekong Delta. Ecnomustriangularis Sun, 1997 is a new species record for Southeast Asia. In addition, E.stungtrengensis sp. n. is described and illustrated. The male genitalia of E.stungtrengensis sp. n. are clearly different from those of other species in the genus Ecnomus by the shape of superior appendages which are slender and bent downwards distally in lateral view.

Larval Taxonomy and Distribution of Genus Hydropsyche (Trichoptera: Hydropsychidae) in Northwestern Algeria.

The main purpose of our paper is to document genus Hydropsyche (Trichoptera: Hydropsychidae) in northwestern Algeria and to provide the larval descriptions of the species set. Larvae, pupae, and imagines were collected from 14 sampling sites over a five-year period (2014-2019). Eight Hydropsyche species have been identified, with Hydropsyche siltalai being a new record for Algeria and North Africa, and Hydropsyche pellucidula a new record for Algeria. A comparison of our checklist with those of the Moroccan Rif and Europe is provided, as well as the geographical distribution of each species. This Algerian Hydropsyche species revision provides precise and reliable taxonomic characters for distinguishing larvae of the species, and a taxonomic key is proposed for their identification. In addition, information regarding their distribution is included.

Interesting new Chinese species of Leptoceridae and Odontoceridae (Insecta: Trichoptera) from several recent collecting efforts.

In contravention of Article 16.4.2 of the International Code of Zoological Nomenclature (International Trust for Zoological Nomenclature 1999), the repository for the holotypes of these species was not mentioned by Yang et al. (2020), such that the names proposed for these species are presently nomina nuda.

Interesting new Chinese species of Leptoceridae and Odontoceridae (Insecta: Trichoptera) from several recent collecting efforts.

Nine new species of caddisflies are described from southeastern and central China, including 7 species of Leptoceridae: Ceraclea (Ceraclea) megalophyllon Yang Morse sp. n., C. (Athripsodina) aerumnula Yang Morse sp. n., C. (Ath.) lamellata Yang Hu sp. n., Oecetis (Oecetis) discedens Yang Morse sp. n., Oe. (Pleurograpta) spinellosa Yang Hu sp. n., Setodes charax Yang Morse sp. n., and S. scutatus Yang Morse sp. n. Two species of Odontoceridae also are included: Phraepsyche acuminata Yang Morse sp. n. and Psilotreta longicornis Yang Morse sp. n. The male genitalia of all species and female genitalia of C. megalophylla, C. lamellata, Oecetis discedens, and Oe. spinellosa are figured.

Four new species of Rhyacophila Pictet, 1834 (Trichoptera: Rhyacophilidae) from Southeast Asia.

Four new species of genus Rhyacophila are described and illustrated from Thailand and Myanmar, Southeast Asia. Rhyacophila longicaudata sp. n. is in the R. nigrocephala Group; the very long basal segment of each inferior appendage distinguishes it from other related species. Rhyacophila aksornkoaei sp. n. and R. limsakuli sp. n. are in the R. anatina Group: they can be differentiated from other species of the group by the brush-like parameres and presence of a ventral process of the aedeagus in R. aksornkoaei sp. n., and by the rectangular apical segment of each inferior appendage and the hooked parameres in R. limsakuli sp. n.. Rhyacophila kengtungensis is in the R. yishepa Group and is characterized by the subtriangular shape of the preanal appendages in dorsal view and by the very large dorsal appendages of the phallic apparatus.

Burden of disease from Helicobacter pylori infection in western Canadian Arctic communities.

BACKGROUND: Indigenous communities across the circumpolar north have elevated H. pylori (Hp) prevalence and stomach cancer incidence. We aimed to describe the Hp-associated disease burden among western Canadian Arctic participants in community-driven projects that address concerns about health risks from Hp infection. METHODS: During 2008-2013, participants underwent Hp screening by urea breath test and gastroscopy with gastric biopsies. We estimated Hp prevalence and prevalence by Hp status of endoscopic and histopathologic diagnoses. RESULTS: Among 878 participants with Hp status data, Hp prevalence was: 62% overall; 66% in 740 Indigenous participants; 22% in 77 non-Indigenous participants (61 participants did not disclose ethnicity); 45% at 0-14 years old, 69% at 15-34 years old, and 61% at 35-96 years old. Among 309 participants examined endoscopically, visible mucosal lesions were more frequent in the stomach than the duodenum: the gastric to duodenal ratio was 2 for inflammation, 8 for erosions, and 3 for ulcers. Pathological examination in 308 participants with gastric biopsies revealed normal gastric mucosa in 1 of 224 Hp-positive participants and 77% (65/84) of Hp-negative participants with sharp contrasts in the prevalence of abnormalities between Hp-positive and Hp-negative participants, respectively: moderate-severe active gastritis in 50 and 0%; moderate-severe chronic gastritis in 91 and 1%; atrophic gastritis in 43 and 0%; intestinal metaplasia in 17 and 5%. CONCLUSIONS: The observed pattern of disease is consistent with increased risk of stomach cancer and reflects substantial inequity in the Hp-associated disease burden in western Arctic Canadian hamlets relative to most North American settings. This research adds to evidence that demonstrates the need for interventions aimed at reducing health risks from Hp infection in Indigenous Arctic communities.

Diversity and Ecosystem Services of Trichoptera.

The holometabolous insect order Trichoptera (caddisflies) includes more known species than all of the other primarily aquatic orders of insects combined. They are distributed unevenly; with the greatest number and density occurring in the Oriental Biogeographic Region and the smallest in the East Palearctic. Ecosystem services provided by Trichoptera are also very diverse and include their essential roles in food webs, in biological monitoring of water quality, as food for fish and other predators (many of which are of human concern), and as engineers that stabilize gravel bed sediment. They are especially important in capturing and using a wide variety of nutrients in many forms, transforming them for use by other organisms in freshwaters and surrounding riparian areas. The general pattern of evolution for trichopteran families is becoming clearer as more genes from more taxa are sequenced and as morphological characters are becoming understood in greater detail. This increasingly credible phylogeny provides a foundation for interpreting and hypothesizing the functional traits of this diverse order of freshwater organisms and for understanding the richness of the ecological services corresponding with those traits. Our research also is gaining insight into the timing of evolutionary diversification in the order. Correlations for the use of angiosperm plant material as food and case construction material by the earliest ancestors of infraorder Plenitentoria-by at least 175 Ma-may provide insight into the timing of the origin of angiosperms.

Trichoptera of Canada.

Trichoptera, or caddisflies, are common members of freshwater ecosystems as larvae and are important indicators of aquatic system health. As such, the species are relatively well studied, with keys available for larvae and adults of many of the taxa occurring in Canada. The number of species recorded from Canada since 1979 (Wiggins 1979) has increased from 546 to 636, an increase of 16.4%. Of those species newly recorded, 17 represent newly described taxa since 1979. Taking into consideration the species likely to be subsequently found in Canada based on records in adjacent parts of the United States and results from DNA barcoding, an estimated 129-181 species remain to be documented in Canada.

A multipurpose instrument for time-resolved ultra-small-angle and coherent X-ray scattering.

This article presents the main technical features and performance of the upgraded beamline ID02 at the ESRF. The beamline combines different small-angle X-ray scattering techniques in one unique instrument, enabling static and kinetic investigations from ångström to micrometre size scales and time resolution down to the sub-millisecond range. The main component of the instrument is an evacuated detector tube of length 34 m and diameter 2 m. Several different detectors are housed inside a motorized wagon that travels along a rail system, allowing an automated change of the sample-detector distance from about 1 to 31 m as well as selection of the desired detector. For optional combined wide-angle scattering measurements, a wide-angle detector is installed at the entrance cone of the tube. A scattering vector (of magnitude q) range of 0.002 ≤ q ≤ 50 nm-1 is covered with two sample-detector distances and a single-beam setting for an X-ray wavelength of 1 Å. In the high-resolution mode, two-dimensional ultra-small-angle X-ray scattering patterns down to q < 0.001 nm-1 can be recorded, and the resulting one-dimensional profiles have superior quality as compared to those measured with an optimized Bonse-Hart instrument. In the highest-resolution mode, the beam is nearly coherent, thereby permitting multispeckle ultra-small-angle X-ray photon correlation spectroscopy measurements. The main applications of the instrument include the elucidation of static and transient hierarchical structures, and nonequilibrium dynamics in soft matter and biophysical systems.

Generation of Electronic Cigarette Aerosol by a Third-Generation Machine-Vaping Device: Application to Toxicological Studies.

Electronic-cigarette (e-cig) devices use heat to produce an inhalable aerosol from a liquid (e-liquid) composed mainly of humectants, nicotine, and flavoring chemicals. The aerosol produced includes fine and ultrafine particles, and potentially nicotine and aldehydes, which can be harmful to human health. E-cig users inhale these aerosols and, with the third-generation of e-cig devices, control design features (resistance and voltage) in addition to the choice of e-liquids, and the puffing profile. These are key factors that can significantly impact the toxicity of the inhaled aerosols. E-cig research, however, is challenging and complex mostly due to the absence of standardized assessments and to the numerous varieties of e-cig models and brands, as well as e-liquid flavors and solvents that are available on the market. These considerations highlight the urgent need to harmonize e-cig research protocols, starting with e-cig aerosol generation and characterization techniques. The current study focuses on this challenge by describing a detailed step-by-step e-cig aerosol generation technique with specific experimental parameters that are thought to be realistic and representative of real-life exposure scenarios. The methodology is divided into four sections: preparation, exposure, post-exposure analysis, plus cleaning and maintenance of the device. Representative results from using two types of e-liquid and various voltages are presented in terms of mass concentration, particle size distribution, chemical composition and cotinine levels in mice. These data demonstrate the versatility of the e-cig exposure system used, aside from its value for toxicological studies, as it allows for a broad range of computer-controlled exposure scenarios, including automated representative vaping topography profiles.

MHz frame rate hard X-ray phase-contrast imaging using synchrotron radiation.

Third generation synchrotron light sources offer high photon flux, partial spatial coherence, and ~10-10 s pulse widths. These enable hard X-ray phase-contrast imaging (XPCI) with single-bunch temporal resolutions. In this work, we exploited the MHz repetition rates of synchrotron X-ray pulses combined with indirect X-ray detection to demonstrate the potential of XPCI with millions of frames per second multiple-frame recording. This allows for the visualization of aperiodic or stochastic transient processes which are impossible to be realized using single-shot or stroboscopic XPCI. We present observations of various phenomena, such as crack tip propagation in glass, shock wave propagation in water and explosion during electric arc ignition, which evolve in the order of km/s (µm/ns).

A Novel in vivo System to Test Bronchodilators.

The incidence and severity of asthma continue to rise worldwide. ß-agonists are the most commonly prescribed therapeutic for asthma management but have less efficacy for some subsets of asthmatic patients and there are concerns surrounding the side effects from their long-term persistent use. The demand to develop novel asthma therapeutics highlights the need for a standardized approach to effectively screen and test potential bronchoprotective compounds using relevant in vivo animal models. Here we describe a validated method of testing potential therapeutic compounds for their fast-acting efficacy during the midst of an induced bronchoconstriction in a house dust mite challenged animal model.

A review of the genus Metalype Klapálek, with descriptions of three new species from China (Trichoptera, Psychomyiidae).

Three new species of Metalype from China, Metalype hubeiensis Qiu & Morse, sp. n., Metalype shexianensis Qiu & Morse, sp. n., and Metalype truncata Qiu & Morse, sp. n., are described and illustrated. Metalype uncatissima (Botosaneanu, 1970) is reported from China for the first time. The differences between genus Metalype and genus Psychomyia are discussed and four Psychomyia species are transferred to Metalype: Metalype holzenthali (Schmid, 1997); Metalype klapaleki (Malicky, 1995a); Metalype kumari (Schmid, 1997); and Metalype nithaiah (Malicky, 2014). A key to the males of Metalype species of the world is provided.

The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life.

DNA barcoding was intended as a means to provide species-level identifications through associating DNA sequences from unknown specimens to those from curated reference specimens. Although barcodes were not designed for phylogenetics, they can be beneficial to the completion of the Tree of Life. The barcode database for Trichoptera is relatively comprehensive, with data from every family, approximately two-thirds of the genera, and one-third of the described species. Most Trichoptera, as with most of life's species, have never been subjected to any formal phylogenetic analysis. Here, we present a phylogeny with over 16 000 unique haplotypes as a working hypothesis that can be updated as our estimates improve. We suggest a strategy of implementing constrained tree searches, which allow larger datasets to dictate the backbone phylogeny, while the barcode data fill out the tips of the tree. We also discuss how this phylogeny could be used to focus taxonomic attention on ambiguous species boundaries and hidden biodiversity. We suggest that systematists continue to differentiate between 'Barcode Index Numbers' (BINs) and 'species' that have been formally described. Each has utility, but they are not synonyms. We highlight examples of integrative taxonomy, using both barcodes and morphology for species description.This article is part of the themed issue 'From DNA barcodes to biomes'.

New species of microcaddisflies from China (Trichoptera: Hydroptilidae).

Five new species of hydroptilids in four genera are described from China, including three new species in Hydroptilinae: Agraylea dactylina n. sp., Allotrichia rhynchophyllum n. sp., and Microptila hamatilis n. sp.; and two new species in Stactobiinae: Stactobiella mutica n. sp. and Stactobiella parallelica n. sp. New records are given for Stactobiella biramosa Martynov 1929 and Pseudoxyethira thingana (Oláh) 1989. Genera Agraylea, Allotrichia, Stactobiella, and Microptila are new to Chinese fauna.