DNA Barcoding Silver Butter Catfish (Schilbe intermedius) Reveals Patterns of Mitochondrial Genetic Diversity Across African River Systems.

The silver butter catfish (Schilbe intermedius) is widely distributed across African river systems. To date, information on its mitochondrial genetic diversity, population structure, and historical demography are not well-established. Herein, we combined newly generated mitochondrial cytochrome c oxidase (COI) subunit I gene sequences with previously published COI sequences in the global databases to reconstruct its phylogeography, population genetic structure, and historical demography. Results from the mtDNA phylogeography and species delimitation tests (Cluster algorithm - Species Identifier, Automatic Barcode Gap Discovery and Poison Tree Process model) revealed that S. intermedius comprises at least seven geographically defined matrilines. Although the overall haplotype diversity of S. intermedius was high (h = 0.90), results showed that East (Kenya) and West (Nigeria) African populations had low levels of haplotype diversity (h = ~0.40). In addition, population genetic polymorphism and historical demographics showed that S. intermedius populations in both East and West Africa underwent severe contractions as a result of biogeographic influences. The patterns of genetic diversity and population structure were consistent with adaptive responses to historical biogeographic factors and contemporary environmental variations across African river systems. This is suggestive of the influence of historical biogeographic factors and climatic conditions on population divergence of S. intermedius across African river systems. Given our discovery of previously underappreciated diversity within S. intermedius, we recommend that this species be considered for increased conservation and management.

DNA barcoding of economically important freshwater fish species from north-central Nigeria uncovers cryptic diversity.

This study examines the utility of morphology and DNA barcoding in species identification of freshwater fishes from north-central Nigeria. We compared molecular data (mitochondrial cytochrome c oxidase subunit I (COI) sequences) of 136 de novo samples from 53 morphologically identified species alongside others in GenBank and BOLD databases. Using DNA sequence similarity-based (≥97% cutoff) identification technique, 50 (94.30%) and 24 (45.30%) species were identified to species level using GenBank and BOLD databases, respectively. Furthermore, we identified cases of taxonomic problems in 26 (49.00%) morphologically identified species. There were also four (7.10%) cases of mismatch in DNA barcoding in which our query sequence in GenBank and BOLD showed a sequence match with different species names. Using DNA barcode reference data, we also identified four unknown fish samples collected from fishermen to species level. Our Neighbor-joining (NJ) tree analysis recovers several intraspecific species clusters with strong bootstrap support (≥95%). Analysis uncovers two well-supported lineages within Schilbe intermedius. The Bayesian phylogenetic analyses of Nigerian S. intermedius with others from GenBank recover four lineages. Evidence of genetic structuring is consistent with geographic regions of sub-Saharan Africa. Thus, cryptic lineage diversity may illustrate species' adaptive responses to local environmental conditions. Finally, our study underscores the importance of incorporating morphology and DNA barcoding in species identification. Although developing a complete DNA barcode reference library for Nigerian ichthyofauna will facilitate species identification and diversity studies, taxonomic revisions of DNA sequences submitted in databases alongside voucher specimens are necessary for a reliable taxonomic and diversity inventory.

Solar drying and organoleptic characteristics of two tropical African fish species using improved low-cost solar driers.

This study was done to evaluate the drying performance, efficiency, and effectiveness of five different types of improved low-cost solar driers in terms of moisture loss from two tropical African fish species Clarias gariepinus (African sharp tooth catfish) and Oreochromis niloticus (Nile tilapia) and testing the organoleptic characteristics of the dried samples. The driers used were made from plastic, aluminum, glass, glass with black igneous stone, and mosquito net, with traditional direct open-sun drying as a control. A significant (P < 0.05) decrease in weight resulting from moisture loss in the two fish species was observed in all the driers, with the highest reduction occurring in the glass drier containing black stone. The rate of weight loss was faster in the first 4 days of drying with black stone-inserted glass drier showing the fastest drying rate with a constant weight in C. gariepinus attained on the 11th day and in O. niloticus on the eighth day. The slowest drier was plastic where a constant weight of the species were recorded on and 13th day and 11th day, respectively. Volunteers were used to assess the organoleptic characteristics of the dried samples and they showed lowest acceptability for the open-sun drying, while samples from the glass drier containing black stone had the highest acceptability in terms of the taste, flavor, appearance, texture, odor, palatability, and shelf-life. The low-cost solar driers were effective found in removing water from the fish resulting in significant loss of weight and moisture. The highest drying time, efficient performance, drying effectiveness, and high acceptability of the organoleptic parameters of the dried products from the black stone-inserted glass drier were due to the ability of the glass and the black stone to retain, transmit, and radiate heat to the fish sample all the time (day and night). These low-cost driers are simple to construct, materials for its construction readily available, easy to maintain and operate, hygienic in use, reliable, effective, occupies less area, dry products faster with increased shelf-life, save man-hour, user-friendly, use renewable energy, protect the drying samples from filthiness, wetness, and invasion by pests, insects, and microbes, with well-dried, high-quality, and better preserved final products. The adoption and use any of these low-cost solar driers by artisanal fishermen and general household in sub-Saharan Africa will not only help in reducing post catch losses, but also ensure food safety and security as there is abundant solar energy in these sub-Saharan African tropical countries for the operation of the driers.

Phytoplankton assemblage of a small, shallow, tropical African reservoir

I measured physico-chemical properties and phytoplankton in the small, shallow tropical reservoir of Oyun (Offa, Nigeria) between January 2002 and December 2003. I identified 25 phytoplankton genera in three sampling stations. Bacillariophyceae dominated (75.3%), followed by Chlorophyceae (12.2%), Cyanobacteria (11.1%) and Desmidiaceae (0.73%). The high amount of nutrients (e.g. nitrate, phosphate, sulphate and silica) explain phytoplankton heterogeneity (p<0.05). Phytoplankton was abundant during the rainy season, but the transition period had the richest assemblage and abundance. Fluctuations in phytoplankton density were a result of seasonal changes in concentration of nutrients, grazing pressure and reservoir hydrology. The reservoir is eutrophic with excellent water quality and a diverse phytoplankton assemblage: fish production would be high. These conditions resulted from strategies such as watershed best management practices (BMPs) to control eutrophication and sedimentation, and priorities for water usage established through legislation. Additional measures are recommended to prevent oligotrophy, hypereutrophy, excessive phytoplankton bloom, toxic cyanobacteria, and run-off of organic waste and salts. Rev. Biol. Trop. 57 (4): 1009-1025. Epub 2009 December 01.

Investigué las propiedades físico-químicas y el fitoplancton del pequeño embalse tropical Oyun (Offa, Nigeria) entre enero de 2002 y diciembre de 2003, para determinar el efecto de las propiedades físico-químicas en el fitoplancton y la producción de peces. En las tres estaciones estudiadas identifiqué 25 géneros de fitoplancton pertenecientes a cuatro clases. Bacillariophyceae dominó (75.3%), seguida de Chlorophyceae (12.2%), Desmidiaceae (11.1%) y Cianobacteria (0.73%). La gran cantidad de nutrientes (e.g. nitrato, fosfato, sulfato y sílice) explica la heterogeneidad del fitoplancton (p<0.05), el cual fue abundante durante la época de lluvias. La zona de transición de la reserva tuvo el conjunto más rico y abundante. Las fluctuaciones en la densidad del fitoplancton fueron resultado de la concentración estacional de los nutrientes, la presión del forrajeo y la hidrología. El embalse es eutrófico con agua excelente y fitoplancton diverso, y por tanto su producción pesquera sería alta. Estas condiciones son consecuencia de estrategias como mejores prácticas de gestión de cuencas (BPM) para controlar la eutroficación y la sedimentación, y el establecimiento de prioridades legales para un buen uso del agua. Recomiendo medidas adicionales contra la oligotrofía, la hipereutrofia, el exceso de fitoplancton, las cianobacterias tóxicas, las escorrentías de residuos orgánicos y el exceso de sales disueltas.

Zooplankton assemblage of Oyun Reservoir, Offa, Nigeria

The influence of physico-chemical properties of Oyun Reservoir, Offa, Nigeria (a shallow tropical African reservoir) on its zooplankton composition and abundance were investigated at three stations for two years between January 2002 and December 2003. Diversity is not high: only three groups of zooplankton were found: Rotifera with eight genera; and Cladocera and Copepoda with three genera each. Rotifera dominated numerically (71.02%), followed by Cladocera (16.45%) and Copepoda (12.53%). The zooplankton was more prevalent during the rainy season, and there were variations in the composition and abundance along the reservoir continuum. Factors such as temperature, nutrients, food availability, shape and hydrodynamics of the reservoir, as well as reproductive strategies of the organisms, strongly influence the generic composition and population density of zooplankton. Prevention of ecological deterioration of the water body would greatly should result in a more productive water body, rich in zooplankton and with better fisheries. Rev. Biol. Trop. 57 (4): 1027-1047. Epub 2009 December 01.

La influencia de las propiedades fisicoquímicas del Reservorio Oyun, Offa, Nigeria (un embalse tropical somero) sobre la composición y abundancia del zooplancton fue investigada en tres estaciones entre enero de 2002 y diciembre de 2003. La diversidad no resultó muy alta con tres grupos de zooplancton: Rotifera con ocho géneros, y Cladocera y Copepoda con tres géneros cada uno. Rotifera dominó (71.02%), seguido de Cladocera (16.45%) y Copepoda (12.53%). El zooplancton fue más común durante la temporada de lluvias, y hubo variaciones en su composición y abundancia a lo largo del embalse. Factores tales como la temperatura, los nutrientes, la disponibilidad de alimentos, la forma y la hidrodinámica del embalse, así como las estrategias reproductivas de los organismos, influyen fuertemente en la composición genérica y la densidad poblacional del zooplancton. La prevención del deterioro ecológico de esta masa de agua, resultaría en un cuerpo de agua más productivo, rico en zooplancton y con mejor pesca.

Limnological evaluation of the fisheries potentials and productivity of a small shallow tropical African reservoir

Morphometrics and physico-chemical parameters of Oyun reservoir, Offa, Nigeria (a small shallow tropical African Reservoir) were used to estimate the potential fish yield of the reservoir according to the morpho-edaphic index (MEI). Physico-chemical characteristics of the water body were sampled monthly from three stations between January 2002 and December 2003 with standard methods. Estimates of the potential fish yield were obtained using the physico-chemical characteristics of the reservoir and the relationship Y = 23.281 MEI 0.447, where Y is the potential fish yield in kg/ha, MEI is the morpho-edaphic index (given in μS/cm and estimated by dividing the mean conductivity by the mean depth). The reservoir mean depth and conductivity values were 2.6m and 113.10μS/cm respectively, while its potential fish yield was estimated at 125.72 kg/ha. This estimate was higher than other small shallower and larger African reservoirs. The reservoir high ionic content, high nutrient and dissolved oxygen levels, good pH, low level of pollution and shallow depth were responsible for the high estimate of the fish yield. In order to realize this high potential fish yield and sustainable exploration of the fisheries, effective management of the reservoir to curb eutrophication should be adopted, while other management practices such as stocking and conservation of desirable and indigenous fish species, implementation of fishing regulations and adoption of best management practices should be implemented. Rev. Biol. Trop. 57 (4): 1093-1106. Epub 2009 December 01.

La morfometría y parámetros físico-químicos del Embalse Oyun, Offa, Nigeria (un pequeño y somero embalse tropical Africano), fueron utilizados con la finalidad de estimar el rendimiento pesquero potencial, de acuerdo con el índice morfo-edáfico (IME). Las características físico-químicas del cuerpo de agua fueron evaluadas mensualmente en tres estaciones, entre enero 2002 y diciembre 2003, con métodos estandarizados. Las estimaciones del rendimiento pesquero potencial se obtuvieron utilizando las características físico-químicas del Embalse y la relación Y = 23.281 MEI 0.447, donde Y es el rendimiento pesquero potencial en kg/ha, e IME es el índice morfo edáfico (dado en μS/cm y calculado al dividir la conductividad mediav por la profundidad promedio). Los valores medios de profundidad y conductividad del Embalse fueron 2.6m y 113.10μS/cm respectivamente, mientras que el rendimiento pesquero potencial se estimσ en 125.72 kg/ha. Este estimado fue superior al reportado para otros embalses mαs pequeρos y menos profundos, así como para otros más grandes de Africa. Las condiciones de altos contenidos de iones, nutrientes y niveles de oxígeno disuelto, así como el pH adecuado, bajos niveles de contaminación y la poca profundidad, pudieron haber contribuido con esa alta productividad. Con el fin de garantizar un alto potencial de rendimiento y la sostenibilidad de las pesquerías en el Embalse, se recomienda una gestión eficaz, para reducir la eutrofización, así como la implementación de otras prácticas de manejo, tales como la aplicación de regulaciones pesqueras y la adopción de buenas prácticas de gestión, que promuevan el mantenimiento del stock y la conservación de especies autóctonas.

Influence of watershed activities on the water quality and fish assemblages of a tropical African reservoir.

Agricultural and fisheries activities around the watershed of an African tropical reservoir (Oyun reservoir, Offa, Nigeria) were found to contribute significantly to water quality deterioration of the dam axis of the reservoir, leading to eutrophication of that part of the reservoir. This is evident from the high amount of nitrate (6.4 mg/l), phosphate (2.2 mg/l) and sulphate (16.9 mg/l) in the water body which was higher than most other reservoirs in Nigeria. These nutrients originate in fertilizer run-offs from nearby farmlands and were found in higher concentrations in the rainy season which is usually the peak of agricultural activities in the locality. The eutrophication was more pronounced on the dam axis because it is the point of greatest human contact where pressure and run-off of sediments were high. The eutrophication altered the food web cycle which consequently affected the fish species composition and abundance with the dominance of cichlids (planktivorous group) and decline of some species in the fish population. Best management practices (BMP) to control and reduce the eutrophication and improve water quality and fish assemblages should be adopted and adapted to suit the situation in the reservoir.

Influence of watershed activities on the water quality and fish assemblages of a tropical African reservoir

Agricultural and fisheries activities around the watershed of an African tropical reservoir (Oyun reservoir, Offa, Nigeria) were found to contribute significantly to water quality deterioration of the dam axis of the reservoir, leading to eutrophication of that part of the reservoir. This is evident from the high amount of nitrate (6.4 mg/l), phosphate (2.2 mg/l) and sulphate (16.9 mg/l) in the water body which was higher than most other reservoirs in Nigeria. These nutrients originate in fertilizer run-offs from nearby farmlands and were found in higher concentrations in the rainy season which is usually the peak of agricultural activities in the locality. The eutrophication was more pronounced on the dam axis because it is the point of greatest human contact where pressure and run-off of sediments were high. The eutrophication altered the food web cycle which consequently affected the fish species composition and abundance with the dominance of cichlids (planktivorous group) and decline of some species in the fish population. Best management practices (BMP) to control and reduce the eutrophication and improve water quality and fish assemblages should be adopted and adapted to suit the situation in the reservoir. Rev. Biol. Trop. 57 (3): 707-719. Epub 2009 September 30.

Las actividades agrícolas y pesqueras que se desarrollan alrededor del embalse tropical africano de Oyun, Offa, Nigeria, contribuyen de forma significativa al deterioro de la calidad del agua, provocando eutroficación. Esto es evidente a partir de la gran cantidad de nitrato (6.4 mg / l), fosfato (2.2 mg / l) y sulfato (16.9 mg / l), si se compara con otros embalses de Nigeria. Estos nutrientes proceden de fertilizantes utilizados en áreas agrícolas y las concentraciones aumentan en la estación lluviosa cuando aumentan las actividades agrícolas en la zona. La eutroficación es más pronunciada donde existe mayor actividad humana, y altera la cadena trófica y en consecuencia, la composición íctica, con predominio de los cíclidos y disminución de otros peces. Se requiere manejo de la cuenca para reducir la eutrofización y mejorar la calidad del agua y los peces.

Phytoplankton assemblage of a small, shallow, tropical African reservoir.

I measured physico-chemical properties and phytoplankton in the small, shallow tropical reservoir of Oyun (Offa, Nigeria) between January 2002 and December 2003. I identified 25 phytoplankton genera in three sampling stations. Bacillariophyceae dominated (75.3%), followed by Chlorophyceae (12.2%), Cyanobacteria (11.1%) and Desmidiaceae (0.73%). The high amount of nutrients (e.g. nitrate, phosphate, sulphate and silica) explain phytoplankton heterogeneity (p<0.05). Phytoplankton was abundant during the rainy season, but the transition period had the richest assemblage and abundance. Fluctuations in phytoplankton density were a result of seasonal changes in concentration of nutrients, grazing pressure and reservoir hydrology. The reservoir is eutrophic with excellent water quality and a diverse phytoplankton assemblage: fish production would be high. These conditions resulted from strategies such as watershed best management practices (BMPs) to control eutrophication and sedimentation, and priorities for water usage established through legislation. Additional measures are recommended to prevent oligotrophy, hypereutrophy, excessive phytoplankton bloom, toxic cyanobacteria, and run-off of organic waste and salts.

Zooplankton assemblage of Oyun Reservoir, Offa, Nigeria.

The influence of physico-chemical properties of Oyun Reservoir, Offa, Nigeria (a shallow tropical African reservoir) on its zooplankton composition and abundance were investigated at three stations for two years between January 2002 and December 2003. Diversity is not high: only three groups of zooplankton were found: Rotifera with eight genera; and Cladocera and Copepoda with three genera each. Rotifera dominated numerically (71.02%), followed by Cladocera (16.45%) and Copepoda (12.53%). The zooplankton was more prevalent during the rainy season, and there were variations in the composition and abundance along the reservoir continuum. Factors such as temperature, nutrients, food availability, shape and hydrodynamics of the reservoir, as well as reproductive strategies of the organisms, strongly influence the generic composition and population density of zooplankton. Prevention of ecological deterioration of the water body would greatly should result in a more productive water body, rich in zooplankton and with better fisheries.

Limnological evaluation of the fisheries potentials and productivity of a small shallow tropical African reservoir.

Morphometrics and physico-chemical parameters of Oyun reservoir, Offa, Nigeria (a small shallow tropical African Reservoir) were used to estimate the potential fish yield of the reservoir according to the morpho-edaphic index (MEI). Physico-chemical characteristics of the water body were sampled monthly from three stations between January 2002 and December 2003 with standard methods. Estimates of the potential fish yield were obtained using the physico-chemical characteristics of the reservoir and the relationship Y = 23.281 MEI(0.447), where Y is the potential fish yield in kg/ha, MEI is the morpho-edaphic index (given in microS/cm and estimated by dividing the mean conductivity by the mean depth). The reservoir mean depth and conductivity values were 2.6m and 113.10 microS/cm respectively, while its potential fish yield was estimated at 125.72 kg/ha. This estimate was higher than other small shallower and larger African reservoirs. The reservoir high ionic content, high nutrient and dissolved oxygen levels, good pH, low level of pollution and shallow depth were responsible for the high estimate of the fish yield. In order to realize this high potential fish yield and sustainable exploration of the fisheries, effective management of the reservoir to curb eutrophication should be adopted, while other management practices such as stocking and conservation of desirable and indigenous fish species, implementation of fishing regulations and adoption of best management practices should be implemented.