Adsorption of SARS-CoV-2 Spike (N501Y) RBD to Human Angiotensin-Converting Enzyme 2 at a Lipid/Water Interface.

The receptor binding domain (RBD) of spike proteins plays a crucial role in the process of severe acute respiratory syndrome corona virus 2 (SARS-CoV-2) attachment to the human angiotensin-converting enzyme 2 (ACE2). The N501Y mutation and later mutations introduced extra positive charges on the spike RBD and resulted in higher transmissibility, likely due to stronger binding with the highly negatively charged ACE2. Consequently, many studies have been devoted to understanding the molecular mechanism of spike protein binding with the ACE2 receptor. Most of the theoretical studies, however, have been done on isolated proteins. ACE2 is a transmembrane protein; thus, it is important to understand the interaction of spike proteins with ACE2 in a lipid matrix. In this study, the adsorption of ACE2 and spike (N501Y) RBD at a lipid/water interface was studied using the heterodyne-detected vibrational sum frequency generation (HD-VSFG) technique. The technique is a non-linear optical spectroscopy which measures vibrational spectra of molecules at an interface and provides information on their structure and orientation. It is found that ACE2 is effectively adsorbed at the positively charged 1,2-dipalmitoyl-3-trimethylammonium-propane (DPTAP) lipid monolayer via electrostatic interactions. The adsorption of ACE2 at the DPTAP monolayer causes a reorganization of interfacial water (D2O) from the D-down to the D-up orientation, indicating that the originally positively charged DPTAP interface becomes negatively charged due to ACE2 adsorption. The negatively charged interface (DPTAP/ACE2) allows further adsorption of positively charged spike RBD. HD-VSFG spectra in the amide I region show differences for spike (N501Y) RBD adsorbed at D2O, DPTAP, and DPTAP/ACE2 interfaces. A red shift observed for the spectra of spike RBD/DPTAP suggests that spike RBD oligomers are formed upon contact with DPTAP lipids.

Structure of water and polymer at the buried polymer/water interface unveiled using heterodyne-detected vibrational sum frequency generation.

The structure of the prototypical acrylic polymer (poly(methyl methacrylate): PMMA)/water interface is elucidated at the molecular level using heterodyne-detected sum-frequency generation. Two distinct OH groups of interfacial water are found at the interface: one forms hydrogen bonds with the carbonyl group and the other weakly interacts with the ester methyl group of the polymer surface.

The Topmost Water Structure at a Charged Silica/Aqueous Interface Revealed by Heterodyne-Detected Vibrational Sum Frequency Generation Spectroscopy.

Despite recent significant advances in interface-selective nonlinear spectroscopy, the topmost water structure at a charged silica surface is still not clearly understood. This is because, for charged interfaces, not only interfacial molecules at the topmost layer but also a large number of molecules in the electric double layer are probed even with second-order nonlinear spectroscopy. In the present study, we studied water structure at the negatively charged silica/aqueous interface at pH 12 using heterodyne-detected vibrational sum frequency generation spectroscopy, and demonstrated that the spectral component of the topmost water can be extracted by examining the ionic strength dependence of the Imχ(2) spectrum. The obtained Imχ(2) spectrum indicates that the dominant water species in the topmost layer is hydrogen-bonded to the negatively charged silanolate at the silica surface with one OH group. There also exists minor water species that weakly interacts with the oxygen atom of a siloxane bridge or the remaining silanol at the silica surface, using one OH group. The ionic strength dependence of the Imχ(2) spectrum indicates that this water structure of the topmost layer is unchanged in a wide ionic strength range from 0.01 to 2 M.

Diameter scaling of the optical band gap in individual CdSe nanowires.

The diameter dependence of the optical band gap of single CdSe nanowires (NWs) is investigated by a combination of atomic force microscopy, scanning fluorescence microscopy, and transmission electron microscopy. We find a good congruence of the experimental data to calculations within the effective mass approximation taking into account quantization, exciton Coulomb interaction, and dielectric mismatch. The experimental data are furthermore compared to different theoretical approaches. We discuss the influence of alternating wurtzite and zinc blende segments along the NWs on their optical properties.

Solution-liquid-solid synthesis of semiconductor nanowires using clusters as single-source precursors.

CdSe clusters react with liquid Bi- nanocatalysts to form one-dimensional CdSe nanowires in solution. The use of cluster precursors as compared to molecular precursors leads to a high local CdSe concentration, which favors the growth of nanowires with thin diameters and a narrow diameter distribution.

Tunable electrical transport through annealed monolayers of monodisperse cobalt-platinum nanoparticles.

We synthesized monodisperse cobalt-platinum nanoparticles Co(0.14-0.22)Pt(0.86-0.78) of 9 nm in diameter by colloidal chemistry methods and deposited them by the Langmuir-Blodgett technique as highly ordered monolayers onto substrates with e-beam defined gold electrodes. Upon annealing we observe an increase of conductivity over more than 4 orders of magnitude. A first attempt of explanation of this unanticipated effect, a nanoparticle displacement, could not be confirmed for annealing temperatures below 400 °C. A second approach, a carbonization of the ligands, however, could be confirmed by Raman spectroscopy. The simple thermal treatment allows tuning essential properties of electronic devices based on nanoparticles by the manipulation of the interparticle coupling, namely the electrical conductivity, the Coulomb blockade characteristic, and the activation energy of the system.

Reversible attachment of platinum alloy nanoparticles to nonfunctionalized carbon nanotubes.

The formation of monodisperse, tunable sized, alloyed nanoparticles of Ni, Co, or Fe with Pt and pure Pt nanoparticles attached to carbon nanotubes has been investigated. Following homogeneous nucleation, nanoparticles attach directly to nonfunctionalized single-walled and multi-walled carbon nanotubes during nanoparticle synthesis as a function of ligand nature and the nanoparticle work function. These ligands not only provide a way to tune the chemical composition, size, and shape of the nanoparticles but also control a strong reversible interaction with carbon nanotubes and permit controlling the nanoparticle coverage. Raman spectroscopy reveals that the sp(2) hybridization of the carbon lattice is not modified by the attachment. In order to better understand the interaction between the directly attached nanoparticles and the nonfunctionalized carbon nanotubes, we employed first-principles calculations on model systems of small Pt clusters and both zigzag and armchair single-walled carbon nanotubes. The detailed comprehension of such systems is of major importance since they find applications in catalysis and energy storage.